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RESEARCH ARTICLE

Phytoplankton in dryland riverine waterholes: environmental drivers, variability and ecosystem-monitoring potential using different levels of taxonomic resolution and dataset reduction

Carrie K. Preite A B and Richard G. Pearson https://orcid.org/0000-0001-6047-031X A C
+ Author Affiliations
- Author Affiliations

A College of Science and Engineering, James Cook University, Townsville, Qld 4811, Australia.

B Department of Biological Sciences, College of Southern Nevada, 3200 East Cheyenne Avenue, North Las Vegas, NV 89030, USA.

C Corresponding author. Email: richard.pearson@jcu.edu.au

Marine and Freshwater Research 72(2) 244-255 https://doi.org/10.1071/MF19343
Submitted: 29 October 2019  Accepted: 19 May 2020   Published: 1 July 2020

Abstract

Waterholes that remain in the dry season in intermittent dryland rivers are important biotic refugia, but detailed ecological descriptions of these habitats and their plankton are scarce. We aimed to determine spatial and temporal variation in phytoplankton assemblages in a tropical Australian dryland river system, their main environmental determinants and the potential of the phytoplankton for ecosystem monitoring. We sampled nine sites in three rivers over 2 years using standard methods. Water quality and phytoplankton assemblages varied considerably among sites, rivers and seasons, reflecting lithology, hydrology, bathymetry and local catchment influences. Major environmental drivers included conductivity, pH, temperature and species of N and P. We analysed several derived versions of the original dataset by using density and presence–absence data, eliminating rarer species and grouping species into higher taxa. We found substantial consistency among analyses in environmental drivers, identified using distance-based linear modelling, and in variability among systems, identified using nested permutational multivariate analysis of variance (PERMANOVA). Responsiveness of the algal assemblages to environmental drivers and consistency among analyses, even using subsamples at low taxonomic resolution, suggests potential for ecosystem monitoring and optimising of sample throughput, although variability among systems requires substantial effort to determine the range of reference conditions.

Additional keywords: algae, Australia, methods, river health, tropics.


References

Anderson, M. J., Gorley, R. N., and Clarke, K. R. (2008). ‘PERMANOVA+ for PRIMER: Guide to Software and Statistical Methods.’ (PRIMER-E: Plymouth, UK.)

Blanchette, M. L., and Pearson, R. G. (2012). Macroinvertebrate assemblages in rivers of the Australian dry tropics are highly variable. Freshwater Science 31, 865–881.
Macroinvertebrate assemblages in rivers of the Australian dry tropics are highly variable.Crossref | GoogleScholarGoogle Scholar |

Blanchette, M. L., and Pearson, R. G. (2013). Dynamics of habitats and macroinvertebrate assemblages in rivers of the Australian dry tropics. Freshwater Biology 58, 742–757.
Dynamics of habitats and macroinvertebrate assemblages in rivers of the Australian dry tropics.Crossref | GoogleScholarGoogle Scholar |

Bormans, M., Ford, P. W., Fabbro, L. D., and Hancock, G. (2004). Onset and persistence of cyanobacterial blooms in a large impounded tropical river, Australia. Marine and Freshwater Research 55, 1–15.
Onset and persistence of cyanobacterial blooms in a large impounded tropical river, Australia.Crossref | GoogleScholarGoogle Scholar |

Bortolini, J. C., Pineda, A., Rodrigues, L. C., Jati, S., and Velho, L. F. M. (2017). Environmental and spatial processes influencing phytoplankton biomass along a reservoirs–river–floodplain lakes gradient: a metacommunity approach. Freshwater Biology 62, 1756–1767.
Environmental and spatial processes influencing phytoplankton biomass along a reservoirs–river–floodplain lakes gradient: a metacommunity approach.Crossref | GoogleScholarGoogle Scholar |

Bovo-Scomparin, V. M., and Train, S. (2008). Long-term variability of the phytoplankton community in an isolated floodplain lake of the Ivinhema River State Park, Brazil. Hydrobiologia 610, 331–344.
Long-term variability of the phytoplankton community in an isolated floodplain lake of the Ivinhema River State Park, Brazil.Crossref | GoogleScholarGoogle Scholar |

Bunn, S. E., Thoms, M. C., Hamilton, S. K., and Capon, S. J. (2006). Flow variability in dryland rivers: boom, bust and the bits in between. River Research and Applications 22, 179–186.
Flow variability in dryland rivers: boom, bust and the bits in between.Crossref | GoogleScholarGoogle Scholar |

Bunn, S. E., Abal, E. G., Smith, M. J., Choy, S. C., Fellows, C. S., Harch, B. D., Kennard, M. J., and Sheldon, F. (2010). Integration of science and monitoring of river ecosystem health to guide investments in catchment protection and rehabilitation. Freshwater Biology 55, 223–240.
Integration of science and monitoring of river ecosystem health to guide investments in catchment protection and rehabilitation.Crossref | GoogleScholarGoogle Scholar |

Butler, B., Burrows, D., and Loong, D. (2009). Strategies for monitoring freshwater habitats in the Burdekin Dry Tropics NRM region to establish regional ambient water quality guidelines and assess the condition of wetlands in the lower Burdekin. ACTFR Report number 09/26, James Cook University, Townsville, Qld, Australia.

Castillo, M. M., Allan, J. D., Sinsabaugh, R. L., and Kling, G. W. (2004). Seasonal and interannual variation of bacterial production in lowland rivers of the Orinoco basin. Freshwater Biology 49, 1400–1414.
Seasonal and interannual variation of bacterial production in lowland rivers of the Orinoco basin.Crossref | GoogleScholarGoogle Scholar |

Chessman, B. C., Bate, N., Gell, P. A., and Newall, P. (2007). A diatom species index for bioassessment of Australian rivers. Marine and Freshwater Research 58, 542–557.
A diatom species index for bioassessment of Australian rivers.Crossref | GoogleScholarGoogle Scholar |

Costelloe, J. F., Powling, J., Reid, J. R. W., Shiel, R. J., and Hudson, P. (2005). Algal diversity and assemblages in arid zone rivers of the Lake Eyre basin, Australia. River Research and Applications 21, 337–349.
Algal diversity and assemblages in arid zone rivers of the Lake Eyre basin, Australia.Crossref | GoogleScholarGoogle Scholar |

Coughlin, T., O’Reagain, P., Nelson, B., Butler, B. M., and Burrows, D. W. (2008). ‘Managing for Water Quality Within Grazing Lands Within the Burdekin Catchment – Guidelines for Land Managers.’ (Burdekin Solutions: Townsville, Qld, Australia.)

Davis, A. M., Pearson, R. G., Brodie, J. E., and Butler, B. (2017). Review and conceptual models of agricultural impacts and water quality in tropical and sub-tropical waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research 68, 1–19.
Review and conceptual models of agricultural impacts and water quality in tropical and sub-tropical waterways of the Great Barrier Reef catchment area.Crossref | GoogleScholarGoogle Scholar |

Dey, R., Lewis, S. C., Arblaster, J. M., and Abram, N. J. (2019). A review of past and projected changes in Australia’s rainfall. Wiley Interdisciplinary Reviews: Climate Change 10, e577.
A review of past and projected changes in Australia’s rainfall.Crossref | GoogleScholarGoogle Scholar |

Dufrêne, M., and Legendre, P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecological Monographs 67, 345–366.
Species assemblages and indicator species: the need for a flexible asymmetrical approach.Crossref | GoogleScholarGoogle Scholar |

Fabbro, L. D., and Duivenvoorden, L. J. (2000). A two-part model linking multidimensional environmental gradients and seasonal succession of phytoplankton assemblages. Hydrobiologia 438, 13–24.
A two-part model linking multidimensional environmental gradients and seasonal succession of phytoplankton assemblages.Crossref | GoogleScholarGoogle Scholar |

Fazio, A., and O’Farrell, I. (2005). Phytoplankton and water quality in a shallow lake: a response to secondary salinization (Argentina). Wetlands 25, 531–541.
Phytoplankton and water quality in a shallow lake: a response to secondary salinization (Argentina).Crossref | GoogleScholarGoogle Scholar |

Frau, D., Mayora, G., and Devercelli, M. (2018). Phytoplankton-based water quality metrics: feasibility of their use in a Neotropical shallow lake. Marine and Freshwater Research 69, 1746–1754.
Phytoplankton-based water quality metrics: feasibility of their use in a Neotropical shallow lake.Crossref | GoogleScholarGoogle Scholar |

Guiry, M. D., Guiry, G. M., Morrison, L., Rindi, F., Valenzuela Miranda, S., Mathieson, A. C., Parker, B. C., Langangen, A., John, D. M., Bárbara, I., Carter, C. F., Kuipers, P., and Garbary, D. J. (2014). AlgaeBase: an on-line resource for Algae. Cryptogamie. Algologie 35, 105–115.
AlgaeBase: an on-line resource for Algae.Crossref | GoogleScholarGoogle Scholar |

Ha, K., Jang, M. H., and Joo, G. J. (2002). Spatial and temporal dynamics of phytoplankton communities along a regulated river system, the Nakdong River, Korea. Hydrobiologia 470, 235–245.
Spatial and temporal dynamics of phytoplankton communities along a regulated river system, the Nakdong River, Korea.Crossref | GoogleScholarGoogle Scholar |

Hawkins, P., and Griffiths, D. (1993). Artificial destratification of a small tropical reservoir: effects upon the phtoplankton. Hydrobiologia 254, 169–181.
Artificial destratification of a small tropical reservoir: effects upon the phtoplankton.Crossref | GoogleScholarGoogle Scholar |

Hecky, R. E., and Kling, H. J. (1981). The phytoplankton and the protozooplankton of the euphotic zone of Lake Tanganyika: species composition, biomass, chlorophyll content and spatio-temporal distribution. Limnology and Oceanography 26, 548–564.
The phytoplankton and the protozooplankton of the euphotic zone of Lake Tanganyika: species composition, biomass, chlorophyll content and spatio-temporal distribution.Crossref | GoogleScholarGoogle Scholar |

Ho, J. C., Michalak, A. M., and Pahlevan, N. (2019). Widespread global increase in intense lake phytoplankton blooms since the 1980s. Nature 574, 667–670.
Widespread global increase in intense lake phytoplankton blooms since the 1980s.Crossref | GoogleScholarGoogle Scholar | 31610543PubMed |

Hoetzel, G., and Croome, R. (1994). Long-term phytoplankton monitoring of the Darling River at Burtundy, New South Wales: incidence and significance of cyanobacterial blooms. Australian Journal of Marine and Freshwater Research 45, 747–759.
Long-term phytoplankton monitoring of the Darling River at Burtundy, New South Wales: incidence and significance of cyanobacterial blooms.Crossref | GoogleScholarGoogle Scholar |

Izaguirre, I., O’Farrell, I., and Tell, G. (2001). Variation in phytoplankton composition and limnological features in a water–water ecotone of the Lower Paraná Basin (Argentina). Freshwater Biology 46, 63–74.

Katsiapi, M., Mazaris, A. D., Charalampous, E., and Moustaka-Gouni, M. (2012). Watershed land use types as drivers of freshwater phytoplankton structure. Hydrobiologia 698, 121–131.
Watershed land use types as drivers of freshwater phytoplankton structure.Crossref | GoogleScholarGoogle Scholar |

Kennard, M. J., Pusey, B. J., Olden, J. D., Mackay, S. J., Stein, J. L., and Marsh, N. (2010). Classification of natural flow regimes in Australia to support environmental flow management. Freshwater Biology 55, 171–193.
Classification of natural flow regimes in Australia to support environmental flow management.Crossref | GoogleScholarGoogle Scholar |

Leigh, C., and Sheldon, F. (2008). Hydrological changes and ecological impacts associated with water resource development in large floodplain rivers in the Australian tropics. River Research and Applications 24, 1251–1270.
Hydrological changes and ecological impacts associated with water resource development in large floodplain rivers in the Australian tropics.Crossref | GoogleScholarGoogle Scholar |

Leigh, C., Burford, M. A., Sheldon, F., and Bunn, S. E. (2010). Dynamic stability in dry season food webs within tropical floodplain rivers. Marine and Freshwater Research 61, 357–368.
Dynamic stability in dry season food webs within tropical floodplain rivers.Crossref | GoogleScholarGoogle Scholar |

Leland, H. V. (2003). The influence of water depth and flow regime on phytoplankton biomass and community structure in a shallow, lowland river. Hydrobiologia 506–509, 247–255.
The influence of water depth and flow regime on phytoplankton biomass and community structure in a shallow, lowland river.Crossref | GoogleScholarGoogle Scholar |

Ling, H. U., and Tyler, P. A. (1986). ‘A Limnological Survey of the Alligator Rivers Region, Part II: Freshwater Algae, Exclusive of Diatoms.’ (Australian Government Publishing Service: Canberra, ACT, Australia.)

McAlice, B. (1971). Phytoplankton sampling with the Sedgwick–Rafter cell. Limnology and Oceanography 16, 19–28.
Phytoplankton sampling with the Sedgwick–Rafter cell.Crossref | GoogleScholarGoogle Scholar |

McCormick, P. V., and Cairns, J. (1994). Algae as indicators of environmental change. Journal of Applied Phycology 6, 509–526.
Algae as indicators of environmental change.Crossref | GoogleScholarGoogle Scholar |

McGregor, G. B., and Fabbro, L. D. (2000). Dominance of Cylindrospermopsis raciborskii (Nostocales, Cyanoprokaryota) in Queensland tropical and subtropical reservoirs: implications for monitoring and management. Lakes and Reservoirs: Research and Management 5, 195–205.
Dominance of Cylindrospermopsis raciborskii (Nostocales, Cyanoprokaryota) in Queensland tropical and subtropical reservoirs: implications for monitoring and management.Crossref | GoogleScholarGoogle Scholar |

McGregor, G. B., Marshall, J. C., and Thoms, M. C. (2006). Spatial and temporal variation in algal-assemblage structure in isolated dryland river waterholes, Cooper Creek and Warrego River, Australia. Marine and Freshwater Research 57, 453–466.
Spatial and temporal variation in algal-assemblage structure in isolated dryland river waterholes, Cooper Creek and Warrego River, Australia.Crossref | GoogleScholarGoogle Scholar |

Naselli-Flores, L., and Padisák, J. (2016). Blowing in the wind: how many roads can a phytoplanktont walk down? A synthesis on phytoplankton biogeography and spatial processes. Hydrobiologia 764, 303–313.
Blowing in the wind: how many roads can a phytoplanktont walk down? A synthesis on phytoplankton biogeography and spatial processes.Crossref | GoogleScholarGoogle Scholar |

O’Farrell, I. (1994). Comparative analysis of the phytoplankton of fifteen lowland fluvial systems of the River Plate Basin (Argentina). Hydrobiologia 289, 109–117.
Comparative analysis of the phytoplankton of fifteen lowland fluvial systems of the River Plate Basin (Argentina).Crossref | GoogleScholarGoogle Scholar |

O’Farrell, I., Sinistro, R., Izaguirre, I., and Unrein, F. (2003). Do steady state assemblages occur in shallow lentic environments from wetlands? Hydrobiologia 502, 197–209.
Do steady state assemblages occur in shallow lentic environments from wetlands?Crossref | GoogleScholarGoogle Scholar |

O’Reagain, P. J., Brodie, J., Fraser, G., Bushell, J. J., Holloway, C. H., Faithful, J. W., and Haynes, D. (2005). Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, north Queensland. Marine Pollution Bulletin 51, 37–50.
Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, north Queensland.Crossref | GoogleScholarGoogle Scholar | 15757706PubMed |

Olguín, H. F., Puig, A., Loez, C. R., Salibián, A., Topalián, M. L., Castañé, P. M., and Rovedatti, M. G. (2004). An integration of water physicochemistry, algal bioassays, phytoplankton, and zooplankton for ecotoxicological assessment in a highly polluted lowland river. Water, Air, and Soil Pollution 155, 355–381.
An integration of water physicochemistry, algal bioassays, phytoplankton, and zooplankton for ecotoxicological assessment in a highly polluted lowland river.Crossref | GoogleScholarGoogle Scholar |

Padisák, J., Vasas, G., and Borics, G. (2016). Phycogeography of freshwater phytoplankton – traditional knowledge and new tools. Hydrobiologia 764, 3–27.
Phycogeography of freshwater phytoplankton – traditional knowledge and new tools.Crossref | GoogleScholarGoogle Scholar |

Peel, M. C., Finlayson, B. L., and McMahon, T. A. (2007). Updated world map of the Koppen–Geiger climate classification. Hydrology and Earth System Sciences 11, 1633–1644.
Updated world map of the Koppen–Geiger climate classification.Crossref | GoogleScholarGoogle Scholar |

Petheram, C., McMahon, T. A., and Peel, M. C. (2008). Flow characteristics of rivers in northern Australia: implications for development. Journal of Hydrology 357, 93–111.
Flow characteristics of rivers in northern Australia: implications for development.Crossref | GoogleScholarGoogle Scholar |

Pettit, N. E., Jardine, T. D., Hamilton, S. K., Sinnamon, V., Valdez, D., Davies, P. M., Douglas, M. M., and Bunn, S. E. (2012). Seasonal changes in water quality and macrophytes and the impact of cattle on tropical floodplain waterholes. Marine and Freshwater Research 63, 788–800.
Seasonal changes in water quality and macrophytes and the impact of cattle on tropical floodplain waterholes.Crossref | GoogleScholarGoogle Scholar |

Preite, C., and Pearson, R. G. (2017). Water quality variability in dryland riverine waterholes: a challenge for ecosystem assessment. Annales de Limnologie 53, 221–232.
Water quality variability in dryland riverine waterholes: a challenge for ecosystem assessment.Crossref | GoogleScholarGoogle Scholar |

Queensland Department of Natural Resources and Mines (2002). Water supply planning study report: Burdekin Basin draft water resource plan. Queensland Government, Brisbane, Qld, Australia.

Reynolds, C. S. (1989). Physical determinants of phytoplankton succession. In ‘Plankton Ecology: Succession in Plankton Communities’. (Ed. U. Sommer.) pp. 9–56. (Springer Verlag: Berlin, Germany.)

Reynolds, C. S. (2006). ‘The Ecology of Phytoplankton.’ (Cambridge University Press: Cambridge, UK.)

Shao, N. F., Yang, S. T., Sun, Y., Gai, Y., Zhao, C. S., Wang, F., Yin, X., and Dong, B. (2019). Assessing aquatic ecosystem health through the analysis of plankton biodiversity. Marine and Freshwater Research 70, 647–655.
Assessing aquatic ecosystem health through the analysis of plankton biodiversity.Crossref | GoogleScholarGoogle Scholar |

Stevenson, R. J. (2014). Ecological assessments with algae: a review and synthesis. Journal of Phycology 50, 437–461.
Ecological assessments with algae: a review and synthesis.Crossref | GoogleScholarGoogle Scholar |

Talling, J. (1986). The seasonality of phytoplankton in African lakes. In ‘Seasonality of Freshwater Phytoplankton – A Global Perspective’. (Eds M. Munawar and J. Talling.) pp. 139–160. (Dr W. Junk Publishers: Dordrecht, Netherlands.)

Townsend, S. A. (2006). Hydraulic phases, persistent stratification, and phytoplankton in a tropical floodplain lake (Mary River, northern Australia). Hydrobiologia 556, 163–179.
Hydraulic phases, persistent stratification, and phytoplankton in a tropical floodplain lake (Mary River, northern Australia).Crossref | GoogleScholarGoogle Scholar |

van Dam, R. A., Camilleri, C., and Finlayson, C. M. (1998). The potential of rapid assessment techniques as early warning indicators of wetland degradation: a review. Environmental Toxicology and Water Quality 13, 297–312.
The potential of rapid assessment techniques as early warning indicators of wetland degradation: a review.Crossref | GoogleScholarGoogle Scholar |

Vollenweider, R. (1969). ‘A Manual on the Methods for Measuring Primary Production in Aquatic Environments.’ (Blackwell Scientific Publications: Oxford, UK.)

Wallace, J., Waltham, N., Burrows, D., and McJannet, D. (2015). The temperature regimes of dry-season waterholes in tropical northern Australia: potential effects on fish refugia. Freshwater Science 34, 663–678.
The temperature regimes of dry-season waterholes in tropical northern Australia: potential effects on fish refugia.Crossref | GoogleScholarGoogle Scholar |

Warfe, D. M., Pettit, N. E., Davies, P. M., Pusey, B. J., Hamilton, S. K., Kennard, M. J., Townsend, S. A., Bayliss, P., Ward, D. P., Douglas, M. M., Burford, M. A., Finn, M., Bunn, S. E., and Halliday, I. A. (2011). The ‘wet–dry’ in the wet–dry tropics drives river ecosystem structure and processes in northern Australia. Freshwater Biology 56, 2169–2195.
The ‘wet–dry’ in the wet–dry tropics drives river ecosystem structure and processes in northern Australia.Crossref | GoogleScholarGoogle Scholar |

Whitton, B. A. (2012). Changing approaches to monitoring during the period of the ‘Use of Algae for Monitoring Rivers’ symposia. Hydrobiologia 695, 7–16.
Changing approaches to monitoring during the period of the ‘Use of Algae for Monitoring Rivers’ symposia.Crossref | GoogleScholarGoogle Scholar |

Zalocar de Domitrovic, Y. Z. (2002). Structure and variation of the Paraguay River phytoplankton in two periods of its hydrological cycle. Hydrobiologia 472, 177–196.
Structure and variation of the Paraguay River phytoplankton in two periods of its hydrological cycle.Crossref | GoogleScholarGoogle Scholar |

Zhao, C., Liua, C., Xiaa, J., Zhanga, Y., Yub, O., and Eamus, D. (2012). Recognition of key regions for restoration of phytoplankton communities in the Huai River basin, China. Journal of Hydrology 420–421, 292–300.
Recognition of key regions for restoration of phytoplankton communities in the Huai River basin, China.Crossref | GoogleScholarGoogle Scholar |

Zohary, T., Padisák, J., and Naselli-Flores, L. (2010). Phytoplankton in the physical environment: beyond nutrients, at the end, there is some light. Hydrobiologia 639, 261–269.
Phytoplankton in the physical environment: beyond nutrients, at the end, there is some light.Crossref | GoogleScholarGoogle Scholar |