Skip to main content
Log in

Overexpression of the regulatory subunit of protein kinase A increases heterologous protein expression in Pichia pastoris

  • Original Research Paper
  • Published:
Biotechnology Letters Aims and scope Submit manuscript

Abstract

Objective

Translational regulation plays an important role in protein synthesis. Our goal was to screen translation-related factors to improve heterologous protein expression in Pichia pastoris.

Results

Twenty-eight translation-related factors were overexpressed in P. pastoris GS115 expressing enhanced green fluorescent protein (eGFP). The results showed that overexpression of Bcy1, the regulatory subunit of protein kinase A (PKA), significantly increased both eGFP expression and cell biomass by 20% under methanol induction for 120 h. Additionally, overexpression of Bcy1 elevated the growth rate by 18% and increased production of the industrial enzyme Phytase (Phy) by 26%. Transcriptome analysis indicated that the overall expression of ribosomal protein genes was significantly downregulated and that postdiauxic shift genes and stress response element genes were upregulated.

Conclusions

Bcy1 regulates ribosome protein genes, postdiauxic shift genes and stress response element genes, leading to improved cell growth and heterologous protein expression. This study provides a convenient and universal factor for heterologous protein production.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Aitken CE, Lorsch JR (2012) A mechanistic overview of translation initiation in eukaryotes. Nat Struct Mol Biol 19:568–576

    Article  CAS  Google Scholar 

  • Budhwar R, Lu A, Hirsch JP (2010) Nutrient control of yeast PKA activity involves opposing effects on phosphorylation of the Bcy1 regulatory subunit. Mol Biol Cell 21:3749–3758

    Article  CAS  Google Scholar 

  • Cameroni E, Hulo N, Roosen J, Winderickx J, De Virgilio C (2004) The novel yeast PAS kinase Rim 15 orchestrates G0-associated antioxidant defense mechanisms. Cell cycle (Georgetown, Tex) 3:462–468

    Article  CAS  Google Scholar 

  • Conrad M, Schothorst J, Kankipati HN, Van Zeebroeck G, Rubio-Texeira M, Thevelein JM (2014) Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae. FEMS Microbiol Rev 38:254–299

    Article  CAS  Google Scholar 

  • De Schutter K et al (2009) Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 27:561–566

    Article  Google Scholar 

  • Dever TE, Green R (2012) The elongation, termination, and recycling phases of translation in eukaryotes. Cold Spring Harb Perspect Biol 4:a013706

    Article  Google Scholar 

  • Gingold H, Pilpel Y (2011) Determinants of translation efficiency and accuracy. Mol Syst Biol 7:481

    Article  Google Scholar 

  • Juturu V, Wu JC (2018) Heterologous Protein Expression in Pichia pastoris: Latest Research Progress and Applications. ChemBioChem 19:7–21

    Article  CAS  Google Scholar 

  • Klumpp S, Scott M, Pedersen S, Hwa T (2013) Molecular crowding limits translation and cell growth. Proc Natl Acad Sci U S A 110:16754–16759

    Article  CAS  Google Scholar 

  • Li C et al (2015) Combined strategies for improving expression of Citrobacter amalonaticus phytase in Pichia pastoris. BMC Biotechnol 15:88

    Article  Google Scholar 

  • Liao X et al (2019) Enhancing co-translational folding of heterologous protein by deleting non-essential ribosomal proteins in Pichia pastoris. Biotechnol Biofuels 12:38

    Article  Google Scholar 

  • Lin XQ, Liang SL, Han SY, Zheng SP, Ye YR, Lin Y (2013) Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris. J Proteomics 91:58–72

    Article  CAS  Google Scholar 

  • Lippman SI, Broach JR (2009) Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6. Proc Natl Acad Sci U S A 106:19928–19933

    Article  CAS  Google Scholar 

  • Maier T, Guell M, Serrano L (2009) Correlation of mRNA and protein in complex biological samples. FEBS Lett 583:3966–3973

    Article  CAS  Google Scholar 

  • Robinson KA, Lopes JM (2000) SURVEY AND SUMMARY: Saccharomyces cerevisiae basic helix-loop-helix proteins regulate diverse biological processes. Nucleic Acids Res 28:1499–1505

    Article  CAS  Google Scholar 

  • van Riggelen J, Yetil A, Felsher DW (2010) MYC as a regulator of ribosome biogenesis and protein synthesis Nature reviews. Cancer 10:301–309

    PubMed  Google Scholar 

  • Yang Z, Zhang Z (2018) Engineering strategies for enhanced production of protein and bio-products in Pichia pastoris: A review. Biotechnol Adv 36:182–195

    Article  CAS  Google Scholar 

Download references

Supporting information

Supplementary Table 1—Primer sequences used in this study.

Supplementary Table 2—Selected translation-related factors of P. pastoris GS115.

Supplementary Table 3—Fold change (log2) in the mRNA expression of PKA-targeted genes.

Funding

This study was financially supported by the National Natural Science Foundation of China (Grant No. 31470159).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ying Lin.

Ethics declarations

Conflict of interest

The authors declare that they have no conflicts of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Liao, X., Lin, W., Chen, N. et al. Overexpression of the regulatory subunit of protein kinase A increases heterologous protein expression in Pichia pastoris. Biotechnol Lett 42, 2685–2692 (2020). https://doi.org/10.1007/s10529-020-02977-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10529-020-02977-z

Keywords

Navigation