Abstract
One of the most destructive diseases affecting potato production globally is bacterial wilt, caused by Ralstonia solanacearum. Options for controlling this pathogen are currently limited. Therefore, in this study, whole genome sequence was used to assess the potential of phage Reminis as biocontrol agent. No sequences related to undesirable genes including virulence factors, antibiotic resistance, or lysogenic mediated or toxin-coding genes were found in phage genome, this suggests that phage Reminis may be a potential candidate for future R. solanacearum control strategies.
Resumen
Una de las enfermedades mas destructivas que afectan la producción de papa globalmente es la marchitez bacteriana, causada por Ralstonia solanacearum. Las opciones para controlar a este patógeno son actualmente limitadas. Por ello, en este estudio, se usó la secuencia genómica para analizar el potencial del fago Reminis como agente de biocontrol. En el genoma del fago no se encontraron secuencias relacionadas con genes “indeseables” que incluyeran factores de virulencia, resistencia a antibiótico, genes de lisogenia o genes que codifiquen toxinas. Esto sugiere que el fago Reminis pudiera ser un candidato potencial para futuras estrategias de control de R. solanacearum.
References
Adriaenssens, E., and J. Brister. 2017. How to name and classify your phage: an informal guide. Viruses 9 (4): 70.
Bolger, A., M. Lohse, and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (15): 2114–2120.
Brussow, H., and F. Desiere. 2001. Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Molecular Microbiology 39 (2): 213–223.
Casjens, S., and E. Gilcrease. 2009. Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. Methods in Molecular Biology 502: 91–111.
Chen, L., D. Zheng, B. Liu, J. Yang, and Q. Jin. 2015. VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on. Nucleic Acids Research, 44(D1), D694–D697.
Fernández, L., D. Gutiérrez, P. García, and A. Rodríguez. 2019. The perfect bacteriophage for therapeutic applications—a quick guide. Antibiotics 8 (3): 126.
Garneau, J., F. Depardieu, L. Fortier, D. Bikard, and M. Monot. 2017. PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data. Scientific Reports 7 (1): 82–92.
Green, M., and J. Sambrook. 2018. Isolation of high-molecular-weight DNA from suspension cultures of mammalian cells using proteinase K and phenol. Cold Spring Harbor Protocols (4):pdb.prot093476.
Jia, B., A. Raphenya, B. Alcock, N. Waglechner, P. Guo, K. Tsang, B. Lago, B. Dave, S. Pereira, A. Sharma, S. Doshi, M. Courtot, R. Lo, L. Williams, J. Frye, T. Elsayegh, D. Sardar, E. Westman, A. Pawlowski, T. Johnson, F. Brinkman, G. Wright, and A. McArthur. 2016. CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Research 45 (D1): D566–D573.
Kutter, E., and A. Sulakvelidze. 2005. Bacteriophages: Biology and applications. Boca Raton: CRC Press.
Messiha, N., K. Elhalag, N. Balabel, S. Farag, H. Matar, M. Hagag, A. Khairy, M. El-Aliem, E. Eleiwa, O. Saleh, and N. Farag. 2019. Microbial biodiversity as related to crop succession and potato intercropping for management of brown rot disease. Egyptian Journal of Biological Pest Control, 29(1).
Wei, C., J. Liu, A. Maina, F. Mwaura, J. Yu, C. Yan, R. Zhang, and H. Wei. 2017. Developing a bacteriophage cocktail for biocontrol of potato bacterial wilt. Virologica Sinica 32 (6): 476–484.
Acknowledgements
Support for the research was provided by the CONACYT (Project no. 251516). The autors appreciates the excellent technical assistance of Ing. Oscar Patrón and Luis Figueroa.
Author information
Authors and Affiliations
Corresponding author
Electronic Supplementary Material
ESM 1
(DOCX 367 kb)
Rights and permissions
About this article
Cite this article
Amarillas, L., Estrada-Acosta, M., León-Chan, R.G. et al. Complete Genome Sequence of Ralstonia Phage Remenis, a Member of Putative New Genus within the Siphoviridae. Am. J. Potato Res. 97, 447–449 (2020). https://doi.org/10.1007/s12230-020-09793-1
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12230-020-09793-1