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Successive mineral nitrogen or phosphorus fertilization alone significantly altered bacterial community rather than bacterial biomass in plantation soil

  • Environmental biotechnology
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Abstract

Bacteria play determining roles in forest soil environment and contribute to essential functions in the cycling of nitrogen (N) and phosphorus (P). Understanding the effects of different fertilizer applications, especially successive fertilization, on soil properties and bacterial community could reveal the impacts of fertilization on forest soil ecology and shed light on the nutrient cycling in forest system. This study aimed to evaluate the impacts of successive mineral N (NH4NO3) and P (NaH2PO4) fertilization at different rates, alone or together, on soil bacterial biomass and communities at 0–5, 5–10, and 10–20 cm. Compared with the control, N fertilization decreased soil pH, but P alone or with N fertilization had negligibly negative impacts on soil pH. Different mineral fertilizer applications, alone or together, showed no significant effects on soil organic matter contents, relative to the control treatment. Bacterial biomass remained stable to different fertilizations but decreased with sampling depths. Sole N or P fertilization, rather than combined fertilizations, significantly changed soil bacterial community structures. Our results demonstrated that mineral N or P fertilization alone significantly affected bacterial community structures rather than biomass in the plantation soils.

Key points

• Impacts of successive mineral fertilization on soil bacteria were determined.

• Mineral fertilization showed negligible impacts on bacterial biomass.

• N additions stimulated Chloroflexi relative abundances.

• Mineral N or P fertilization significantly altered bacterial community structure.

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References

  • Albaugh TJ, Fox TR, Rubilar RA, Cook RL, Amateis RL, Burkhart HE (2017) Post-thinning density and fertilization affect Pinus taeda stand and individual tree growth. Forest Ecol Manag 396:207–216

    Article  Google Scholar 

  • Bai SH, Xu Z, Blumfield TJ, Reverchon F (2015) Human footprints in urban forests: implication of nitrogen deposition for nitrogen and carbon storage. J Soils Sediments 15:1927–1936

    Article  CAS  Google Scholar 

  • Bao SD (2000) Soil agro-chemistrical analysis. China Agriculture Press, Beijing

    Google Scholar 

  • Bao Q, Huang Y, Wang F, Ni S, Nicol GW, Yao H, Ding L (2016) Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil. Appl Microbiol Biotechnol 100:5989–5998

    Article  CAS  PubMed  Google Scholar 

  • Bentzon-Tilia M, Traving SJ, Mantikci M, Knudsen-Leerbeck H, Hansen JLS, Markager S, Riemann L (2014) Significant N2 fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries. ISME J 9:273

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Berthrong ST, Yeager CM, Gallegos-Graves L, Steven B, Eichorst SA, Jackson RB, Kuske CR (2014) Nitrogen fertilization has a stronger effect on soil N-fixing bacterial communities than elevated atmospheric CO2. Appl Environ Microbiol 80:3103–3112

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Blazier MA, Liechty HO, Ellum K (2015) Pine straw raking and fertilizer source impacts on nitrogen mineralization in a loblolly pine plantation. Forest Ecol Manag 341:83–92

    Article  Google Scholar 

  • Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chao A (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11:265–270

    Google Scholar 

  • Chen FS, Niklas KJ, Liu Y, Fang XM, Wan SZ, Wang H (2015) Nitrogen and phosphorus additions alter nutrient dynamics but not resorption efficiencies of Chinese fir leaves and twigs differing in age. Tree Physiol 35:1106–1117

    Article  CAS  PubMed  Google Scholar 

  • Ding LJ, Su JQ, Sun GX, Wu JS, Wei WX (2018) Increased microbial functional diversity under long-term organic and integrated fertilization in a paddy soil. Appl Microbiol Biotechnol 102:1969–1982

    Article  CAS  PubMed  Google Scholar 

  • Dong WY, Zhang XY, Liu XY, Fu XL, Chen FS, Wang HM, Sun XM, Wen XF (2015) Responses of soil microbial communities and enzyme activities to nitrogen and phosphorus additions in Chinese fir plantations of subtropical China. Biogeosciences 12:5537–5546

    Article  Google Scholar 

  • Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG (2012) Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci U S A 109:21390–21395

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Garrison M, Moore JA, Shaw TM, Mika PG (2000) Foliar nutrient and tree growth response of mixed-conifer stands to three fertilization treatments in northeast Oregon and north central Washington. Forest Ecol Manag 132:183–198

    Article  Google Scholar 

  • Giacometti C, Cavani L, Baldoni G, Ciavatta C, Marzadori C, Kandeler E (2014) Microplate-scale fluorometric soil enzyme assays as tools to assess soil quality in a long-term agricultural field experiment. Appl Soil Ecol 75:80–85

    Article  Google Scholar 

  • Hofmannschielle C, Jug A, Makeschin F, Rehfuess KE (1999) Short-rotation plantations of balsam poplars, aspen and willows on former arable land in the Federal Republic of Germany. I. Site-growth relationships. Forest Ecol Manag 121:41–55

    Article  Google Scholar 

  • Hopkins DW, Shiel RS (1996) Size and activity of soil microbial communities in long-term experimental grassland plots treated with manure and inorganic fertilizers. Biol Fertil Soils 22:66–70

    Article  Google Scholar 

  • Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12:1889–1898

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jiang L, Tian D, Ma S, Zhou X, Xu L, Zhu J, Fang J (2018) The response of tree growth to nitrogen and phosphorus additions in a tropical montane rainforest. Sci Total Environ 618:1064–1070

    Article  CAS  PubMed  Google Scholar 

  • Kallenbach C, Grandy AS (2011) Controls over soil microbial biomass responses to carbon amendments in agricultural systems: a meta-analysis. Agric Ecosyst Environ 144:241–252

    Article  Google Scholar 

  • Kang H, Seely B, Wang G, Innes J, Zheng D, Chen P, Wang T, Li Q (2016) Evaluating management tradeoffs between economic fiber production and other ecosystem services in a Chinese-fir dominated forest plantation in Fujian Province. Sci Total Environ 557-558:80–90

    Article  CAS  PubMed  Google Scholar 

  • Lazcano C, Gómez-Brandón M, Revilla P, Domínguez J (2013) Short-term effects of organic and inorganic fertilizers on soil microbial community structure and function. Biol Fertil Soils 49:723–733

    Article  CAS  Google Scholar 

  • Liang Q, Chen H, Gong Y, Fan M, Yang H, Lal R, Kuzyakov Y (2012) Effects of 15 years of manure and inorganic fertilizers on soil organic carbon fractions in a wheat-maize system in the North China Plain. Nutr Cycl Agroecosyst 92:21–33

    Article  Google Scholar 

  • Liu C, Xie J, Song M, Gao Z, Zheng D, Liu X, Ning G, Cheng X, Bruning H (2018) Nitrogen removal performance and microbial community changes in subsurface wastewater infiltration systems (SWISs) at low temperature with different bioaugmentation strategies. Bioresour Technol 250:603–610

    Article  CAS  PubMed  Google Scholar 

  • Lupwayi NZ, Harker KN, Dosdall LM, Turkington TK, Blackshaw RE, O’Donovan JT, Cárcamo HA, Otani JK, Clayton GW (2009) Changes in functional structure of soil bacterial communities due to fungicide and insecticide applications in canola. Agric Ecosyst Environ 130:109–114

    Article  CAS  Google Scholar 

  • Ma Z, Zhang X, Zhang C, Wang H, Chen F, Fu X, Fang X, Sun X, Lei Q (2018) Accumulation of residual soil microbial carbon in Chinese fir plantation soils after nitrogen and phosphorus additions. J For Res 29:953–962

    Article  CAS  Google Scholar 

  • Marschner P, Yang CH, Lieberei R, Crowley DE (2001) Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol Biochem 33:1437–1445

    Article  CAS  Google Scholar 

  • Meng L, Ding W, Cai Z (2005) Long-term application of organic manure and nitrogen fertilizer on N2O emissions, soil quality and crop production in a sandy loam soil. Soil Biol Biochem 37:2037–2045

    Article  CAS  Google Scholar 

  • Pankratov TA, Dedysh SN (2010) Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs. Int J Syst Evol Microbiol 60:2951–2959

    Article  CAS  PubMed  Google Scholar 

  • Pankratov TA, Ivanova AO, Dedysh SN, Liesack W (2011) Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat. Environ Microbiol 13:1800–1814

    Article  CAS  PubMed  Google Scholar 

  • Peacock AD, Mullen MD, Ringelberg DB, Tyler DD, Hedrick DB, Gale PM, White DC (2001) Soil microbial community responses to dairy manure or ammonium nitrate applications. Soil Biol Biochem 33:1011–1019

    Article  CAS  Google Scholar 

  • Phillips RP, Finzi AC, Bernhardt ES (2011) Enhanced root exudation induces microbial feedbacks to N cycling in a pine forest under long-term CO2 fumigation. Ecol Lett 14:187–194

    Article  PubMed  Google Scholar 

  • Plaza C, Hernández D, García-Gil JC, Polo A (2004) Microbial activity in pig slurry-amended soils under semiarid conditions. Soil Biol Biochem 36:1577–1585

    Article  CAS  Google Scholar 

  • Prayogo C, Jones JE, Baeyens J, Bending GD (2014) Impact of biochar on mineralisation of C and N from soil and willow litter and its relationship with microbial community biomass and structure. Biol Fertil Soils 50:695–702

    Article  CAS  Google Scholar 

  • Rinnan R, Michelsen A, Bååth E, Jonasson S (2007) Fifteen years of climate change manipulations alter soil microbial communities in a subarctic heath ecosystem. Glob Chang Biol 13:28–39

    Article  Google Scholar 

  • Salzberg SL, Magoč T (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shannon CE, Weaver W (1949) The mathematical theory of communication. The University of Illinois Press, Urbana, p 117

    Google Scholar 

  • Smith EG, Zentner RP, Campbell CA, Lemke R, Brandt K (2017) Long-term crop rotation effects on production, grain quality, profitability, and risk in the Northern Great Plains. Agron J 109:957–967

    Article  Google Scholar 

  • Sorokin DY, Lücker S, Vejmelkova D, Kostrikina NA, Kleerebezem R, Rijpstra WIC, Damsté JSS, Le Paslier D, Muyzer G, Wagner M, van Loosdrecht MCM, Daims H (2012) Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J 6:2245–2256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Spohn M, Klaus K, Wanek W, Richter A (2016) Microbial carbon use efficiency and biomass turnover times depending on soil depth–implications for carbon cycling. Soil Biol Biochem 96:74–81

    Article  CAS  Google Scholar 

  • Su JQ, Ding LJ, Xue K, Yao HY, Quensen J, Bai SJ, Wei WX, Wu JS, Zhou J, Tiedje JM, Zhu YG (2015) Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Mol Ecol 24:136–150

    Article  CAS  PubMed  Google Scholar 

  • Tang YQ, Zhang XY, Li DD, Wang HM, Chen FS, Fu XL, Fang XM, Sun XM, Yu GR (2016) Impacts of nitrogen and phosphorus additions on the abundance and community structure of ammonia oxidizers and denitrifying bacteria in Chinese fir plantations. Soil Biol Biochem 103:284–293

    Article  CAS  Google Scholar 

  • Tyree MC, Seiler JR, Maier CA (2011) Short-term impacts of soil amendments on belowground C cycling and soil nutrition in two contrasting Pinus taeda L. genotypes. Forest Ecol Manag 262:1473–1482

    Article  Google Scholar 

  • Wang C, Han S, Zhou Y, Yan C, Cheng X, Zheng X, Li MH (2012) Responses of fine roots and soil N availability to short-term nitrogen fertilization in a broad-leaved Korean pine mixed forest in northeastern China. PLoS One 7:e31042

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, DeBoy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson KE, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR (2009) Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 75:2046–2056

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu T, Schoenau JJ, Li F, Qian P, Malhi SS, Shi Y, Xu F (2004) Influence of cultivation and fertilization on total organic carbon and carbon fractions in soils from the Loess Plateau of China. Soil Tillage Res 77:59–68

    Article  Google Scholar 

  • Wurzburger N, Wright SJ (2015) Fine-root responses to fertilization reveal multiple nutrient limitation in a lowland tropical forest. Ecology 96:2137–2146

    Article  PubMed  Google Scholar 

  • Yao H, Huang S, Qiu Q, Li Y, Wu L, Mi W, Dai F (2016) Effects of different fertilizers on the abundance and community structure of ammonia oxidizers in a yellow clay soil. Appl Microbiol Biotechnol 100:6815–6826

    Article  CAS  PubMed  Google Scholar 

  • Yanai RD (1998) The effect of whole-tree harvest on phosphorus cycling in a northern hardwood forest. Forest Ecol Manag 104:281–295

    Article  Google Scholar 

  • Yuan H, Zhu Z, Liu S, Ge T, Jing H, Li B, Liu Q, Lynn TM, Wu J, Kuzyakov Y (2016) Microbial utilization of rice root exudates: 13C labeling and PLFA composition. Biol Fertil Soils 52:615–627

    Article  CAS  Google Scholar 

  • Yue K, Chen Z, Lu W, Liu W, Li M, Shao Y, Tang L, Wan L (2017) Evaluating the mechanical and fire-resistance properties of modified fast-growing Chinese fir timber with boric-phenol-formaldehyde resin. Constr Build Mater 154:956–962

    Article  CAS  Google Scholar 

  • Zhang C, Zhang X, Kuzyakov Y, Wang H, Fu X, Yang Y, Chen F, Dungait J, Green S, Fang X (2020) Responses of C-, N- and P-acquiring hydrolases to P and N fertilizers in a subtropical Chinese fir plantation depend on soil depth. Appl Soil Ecol 150:103465

    Article  Google Scholar 

  • Zhang M, Xu Z, Teng Y, Christie P, Wang J, Ren W, Luo Y, Li Z (2016) Non-target effects of repeated chlorothalonil application on soil nitrogen cycling: the key functional gene study. Sci Total Environ 543:636–643

    Article  CAS  PubMed  Google Scholar 

  • Zhang M, Wang W, Bai SH, Zhou X, Teng Y, Xu Z (2018) Antagonistic effects of nitrification inhibitor 3, 4-dimethylpyrazole phosphate and fungicide iprodione on net nitrification in an agricultural soil. Soil Biol Biochem 116:167–170

    Article  CAS  Google Scholar 

  • Zhang W, Liu S, Zhang M, Li Y, Sheng K, Xu Z (2019) Phyllostachys edulis (moso bamboo) rhizosphere increasing soil microbial activity rather than biomass. J Soils Sediments 19:2913–2926

  • Zhang X, Yang Y, Zhang C, Niu S, Yang H, Yu G, Wang H, Blagodatskaya E, Kuzyakov Y, Tian D, Tang Y, Liu S, Sun X (2017) Contrasting responses of phosphatase kinetic parameters to nitrogen and phosphorus additions in forest soils. Funct Ecol 32:106–116

    Article  Google Scholar 

  • Zhong WH, Cai ZC (2007) Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay. Appl Soil Ecol 36:84–91

    Article  Google Scholar 

  • Zhou S, Liu J, Xu M, Lv J, Sun N (2015) Accumulation, availability, and uptake of heavy metals in a red soil after 22-year fertilization and cropping. Environ Sci Pollut Res 22:15154–15163

    Article  CAS  Google Scholar 

  • Zhou XG, Ye D, Zhu HG, Li XQ, Su Y, Lan J, Wen YG (2017) Effects of second rotation seedlings and coppice on understorey vegetation and timber production of Eucalyptus plantations. J Trop For Sci 29:54–68

    Google Scholar 

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Funding

This work was financially supported by the Innovation Fund Designated for Graduate Students of Jiangxi Agricultural University (NDYC2017-B001), the National Natural Science Foundations of China (31760200 and 31730014).

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YN, MYZ, YQL, and FSC conceived and designed research. YN, HDL SLW, JYX, and XY conducted experiments and contributed to data analysis. YN, MYZ, SHB, ZHX, and XMG wrote and revised the manuscript. All authors read and approved the manuscript.

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Correspondence to Manyun Zhang or Yuanqiu Liu.

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Niu, Y., Zhang, M., Bai, S.H. et al. Successive mineral nitrogen or phosphorus fertilization alone significantly altered bacterial community rather than bacterial biomass in plantation soil. Appl Microbiol Biotechnol 104, 7213–7224 (2020). https://doi.org/10.1007/s00253-020-10761-2

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