Skip to main content

Advertisement

Log in

Variation in the Phosphate Solubilizing Bacteria from Virgin and the Agricultural Soils of Punjab

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

Bacteria with phosphorus (P) solubilization potential are considered vital in promoting bioavailability of phosphorus in soil. The present study was conducted to isolate and study the variation of phosphate solubilizing potential of bacteria isolated from virgin and agricultural soils. Total 30 isolates from virgin soil and 4 isolates from agricultural soil which retained their activity on repeated subculturing were selected. Among the isolates, there was insignificant difference in the total bacterial count from virgin and agricultural soils, however, a significant difference was found in the phosphate solubilizing bacteria (PSB) count and their P solubiling potential. Soil organic matter and available P content were correlated with PSB count. The mean solubilization index (SI) was higher from the isolates from virgin soils. Equal distribution method was employed to categorize the bacterial isolates into low, medium, and high P solubilizers which depicted H ≥ 89.44 and L ≤ 68. Among all the isolates, 23.53% were high P solubilizers (P-89.44–110.88 µg/ml), 55.88% were medium P solubilizers (P- 68–89.44 µg/ml), and 20.58% isolates produced low soluble P (46.56–68 µg/ml). Analysis of the data showed that all the isolates categorized under high P solubilizers belonged to the virgin soil. The isolates were characterized based upon biochemical characterization and belonged to Pseudomonadaceae, Enterobacteriaceae, Bacillaceae, Paenibacillaceae, Micrococcaceae, Burkholderiaceae, Flavobacteriaceae, and Streptococcaceae families. 16 sRNA sequencing of the two isolates showing maximum P solubilization were characterized as Enterobacter hormaechi. However, they differ appreciably in their P solubilization at different temperatures.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  1. Menezes-Blackburn D, Giles C, Darch T, George TS, Blackwell M, Brown SML (2018) Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review. Plant soil 427:5–16. https://doi.org/10.1007/s11104-017-3362-2

    Article  PubMed  CAS  Google Scholar 

  2. Almeida DS, Amp RCA (2016) Ruzigrass grown in rotation with soybean increases soil labile phosphorus. Agron Jl 108(6):2444–2452. https://doi.org/10.2134/agronj2015.0478

    Article  Google Scholar 

  3. Trouillefou CM, Le Cadre E, Cacciaguerra T, Cunin F, Plassard C, Belamie E (2015) Protected activity of a phytase immobilized in mesoporous silica with benefits to plant phosphorus nutrition. J Sol-Gel Sci Technol 74(1):55–65. https://doi.org/10.1007/s10971-014-3577-0

    Article  CAS  Google Scholar 

  4. Kaur R, Kaur S (2018) Biological alternates to synthetic fertilizers: efficiency and future scopes. Indian J Agr Res 52(6):587–595. https://doi.org/10.18805/IJARe.A-5117

    Article  Google Scholar 

  5. Zaidi NW, Dar MH, Singh S, Singh US (2014) Trichoderma species as abiotic stress relievers in plants. Biotechnology and biology of trichoderma. https://doi.org/10.1016/B978-0-444-59576-8.00038-2

    Article  Google Scholar 

  6. Bhatt BP, Mishra JS, Dey A, Singh AK, Kumar S (2016) Second Green Revolution in Eastern India: Issues and Initiatives. Policy Document Indian Council of Agricultural Research, Research Complex for Eastern Region, Patna, India

    Google Scholar 

  7. Franchini JC, Crispino CC, Souza RA, Torres E, Hungria M (2007) Microbiological parameters as indicators of soil quality under various soil management and crop rotation systems in southern Brazil. Soil Till Res 92(1–2):18–29. https://doi.org/10.1016/j.still.2005.12.010

    Article  Google Scholar 

  8. Nakhro N, Dkhar MS (2010) Populations and biomass carbon in paddy field soil. Agron J 9:102–110

    Article  Google Scholar 

  9. Banerjee S, Walder F, Büchi L, Meyer M, Held AY, Gattinger A, Van Der Heijden MG (2019) Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME J. 13(7):1722–1736. https://doi.org/10.1038/s41396-019-0383-2

    Article  PubMed  Google Scholar 

  10. Hillel D (2008) Soil biodiversity. Soil in the Environment 163–174

  11. Abhijith R, Vennila A, Purushothaman CS (2017) Occurrence of Phosphate-Solubilizing Bacteria in Rhizospheric and PneumatophoriSediment of Avicennia marina. Int J Fish Aquat Stud 5(4):284–288

    Google Scholar 

  12. Chatli AS, Beri V, Sidhu BS (2008) Isolation and characterisation of phosphate solubilising microorganisms from the cold desert habitat of Salix alba Linn in trans Himalayan region of Himachal Pradesh. Indian J Microbiol 48(2):267–273. https://doi.org/10.1007/s12088-008-0037-y

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  13. Jorquera MA, Hernández MT, Rengel Z, Marschner P, de la Luz MM (2008) Isolation of culturable phosphobacteria with both phytate-mineralization and phosphate-solubilization activity from the rhizosphere of plants grown in a volcanic soil. Biol Fert Soils 44(8):1025. https://doi.org/10.1007/s00374-008-0288-0

    Article  CAS  Google Scholar 

  14. Mander C, Wakelin S, Young S, Condron L, O’Callaghan M (2012) Incidence and diversity of phosphate-solubilising bacteria are linked to phosphorus status in grassland soils. Soil Biol Biochem 44(1):93–101. https://doi.org/10.1016/j.soilbio.2011.09.009

    Article  CAS  Google Scholar 

  15. Nilanjan M, Sanjib KM, Srikanta S (2015) Ecological significance and phosphorus release potential of phosphate solubilizing bacteria in freshwater ecosystems. Hydrobiologia 745:69–83. https://doi.org/10.1007/s10750-014-2094-z

    Article  CAS  Google Scholar 

  16. Vazquez P, Holguin G, Puente ME, Lopez-Cortes A, Bashan Y (2000) Phosphate-solubilizing microorganisms associated with the rhizosphere of mangroves in a semiarid coastal lagoon. Biol Fert Soils 30(5–6):460–468. https://doi.org/10.1007/s003740050024

    Article  CAS  Google Scholar 

  17. Puente ME, Bashan Y, Li CY, Lebsky VK (2004) Microbial populations and activities in the rhizosphere of rock-weathering desert plants root colonisation and weathering of igneous rocks. Plant Biol 6:629–642. https://doi.org/10.1055/s-2004-821100

    Article  PubMed  CAS  Google Scholar 

  18. Ndung’u-Magiroi KW, Herrmann L, Okalebo JR, Othieno CO, Pypers P, Lesueuz D (2012) Occurrence and genetic diversity of phosphate-solubilizing bacteria in soils of differing chemical characteristics in Kenya. Annals microbiol 62(3):897–904. https://doi.org/10.1007/s13213-011-0326-2

    Article  CAS  Google Scholar 

  19. Kucey RMN (1983) Phosphate solubilizing bacteria and fungi in various cultivated and fungi in various cultivated and virgin Alberta soils. Can J Soil Sci 63:671–678. https://doi.org/10.4141/cjss83-068

    Article  CAS  Google Scholar 

  20. Singh L, Jha S (2015) Isolation of phosphate solubilizing bacteria from Rhizospheric soil and its physiological studies. Eco Env & Cons 21(2):1039–1047

    Google Scholar 

  21. Okalebo JR, Gathua KW, Woomer PL (2002) Laboratory methods of soil and plant analysis. A working manual 2:29–68

    Google Scholar 

  22. Pikovskaya RI (1948) Mobilization of phosphorus in soil in connection with the vital activity of some microbial species. Microbiol 17:362–370

    CAS  Google Scholar 

  23. Bray RH, Kurtz LT (1945) Determination of total, organic, and available forms of phosphorus in soils. Soil Sci 59(1):39–46

    Article  CAS  Google Scholar 

  24. Cappuccino JG, Sherman N (1992) Microbiology; A Laboratory Manual, 3rd edn. Rockland Community College, Suffern, NY, USA

    Google Scholar 

  25. Pamidimarri DVN, Sarkar R, Boricha G, Reddy MP (2009) A simplified method for extraction of high quality genomic DNA from Jatrophacurcas for genetic diversity and molecular marker studies. Indian J Biotechnol 8(2):187–192

    CAS  Google Scholar 

  26. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 70 for bigger datasets. Mol Biol Evol 33:1870–1874. https://doi.org/10.1093/molbev/msw054

    Article  PubMed  CAS  Google Scholar 

  27. Mendes GDO, Freitas ALM, Pereira OL, Silva IR, Vassilev NB, Costa MD (2014) Mechanisms of phosphate solubilization by fungal isolates when exposed to different P sources. Ann Microbiol 64(1):239–249. https://doi.org/10.1007/s13213-013-0656-3

    Article  CAS  Google Scholar 

  28. Katiyar V, Goel R (2003) Solubilization of inorganic phosphate and plant growth promotion by cold tolerant mutants of Pseudomonas fluorescens. Microbiol res 158(2):163–168. https://doi.org/10.1078/0944-5013-00188

    Article  PubMed  CAS  Google Scholar 

  29. Nirukshan GS, Herath HMIK, Wijebandara DMDI, Dissanayake DMPD (2016) Soil Microbial Population and Activity Affected by Fertilizer and Manure Addition in a Coconut Growing Sandy Regosol. In: Proceedings of the sixth symposium on plantation crop research “Plantation Agriculture towards National Prosperity 2–4.

  30. Kang GS, Beri V, Sidhu BS, Rupela OP (2005) A new index to assess soil quality and sustainability of wheat-based cropping systems. Biol Fert Soils 41:389–398. https://doi.org/10.1007/s00374-005-0857-4

    Article  Google Scholar 

  31. Ponmurugan P, Gopi C (2006) Distribution pattern and screening of phosphate solubilizing bacteria isolated from different food and forage crops. J Agron 5(4):600–604

    Article  Google Scholar 

  32. Abderrazak R, Laila N, Jamal I (2017) Occurrence of Phosphate Solubilizing Bacteria in the Rhizosphere of Triticumaestivum L from Meknes, Morocco. Amer J Microbiol Biotechnol 4(1): 1–7. https://www.aascit.org/journal/ajmb.

  33. Suleman M, Yasmin S, Rasul M, Yahya M, Atta BM, Mirza MS (2018) Phosphate solubilizing bacteria with glucose dehydrogenase gene for phosphorus uptake and beneficial effects on wheat. PLoS ONE. https://doi.org/10.1371/journal.pone.0204408

    Article  PubMed  PubMed Central  Google Scholar 

  34. Zheng BX, Zhang DP, Wang Y, Hao XL, Wadaan MA, Hozzein WN, Yang XR (2019) Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community. Scientific reports 9(1):1–8. https://doi.org/10.1038/s41598-018-37003-w

    Article  CAS  Google Scholar 

  35. Madigan M, Martinko J, Parker J (1997) Brock Biology of Microorganisms Upper Saddle River. Prentice Hall, NJ

    Google Scholar 

  36. Eo J, Park KC (2016) Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community. Agric Ecosyst Environ 231:176–182. https://doi.org/10.1016/j.agee.2016.06.039

    Article  Google Scholar 

  37. Vikram A, Alagawadi AR, Hamzehzaghani H, Krishnaraj PU (2007) Factors Related to the Occurrence of Phosphate Solubilizing Bacteria. Int J Agr Res 2(7):571–580

    Article  CAS  Google Scholar 

  38. Kumar A, Rai LC (2017) Soil organic carbon and availability of soil phosphorus regulate abundance of culturable phosphate solubilizing bacteria in paddy fields of the Indo-Gangetic Plain. Pedosphere. https://doi.org/10.1016/S1002-0160(17)60403-X

    Article  Google Scholar 

  39. Pezzolla D, Marconi G, Turchetti B, Zadra C, Agnelli A, Veronesi F, Gigliotti G (2015) Influence of exogenous organic matter on prokaryotic and eukaryotic microbiota in an agricultural soil: A multidisciplinary approach. Soil Biol Biochem 82:9–20. https://doi.org/10.1016/j.soilbio.2014.12.008

    Article  CAS  Google Scholar 

  40. Veldkamp E, Becker A, Schwendenmann L, Clark DA, Schulte-Bisping H (2003) Substantial labile carbon stocks and microbial activity in deeply weathered soils below a tropical wet forest. Global change biol 9(8):1171–1184. https://doi.org/10.1046/j.1365-2486.2003.00656.x

    Article  Google Scholar 

  41. Gyaneshwar P, Kumar GN, Parekh LJ, Poole PS (2002) Role of soil microorganisms in improving P nutrition of plants. Plant soil 245(1):83–93. https://doi.org/10.1023/A:1020663916259

    Article  CAS  Google Scholar 

  42. Mikanova O, Novakova J (2002) Evaluation of the P-solubilizing activity of soil microorganisms and its sensitivity to soluble phosphate. Rostlinnavyroba 48(9):397–400

    CAS  Google Scholar 

  43. Zhong WH, Cai ZC (2007) Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a rice soil derived from quaternary red clay. Appl Soil Ecol 36:84–91. https://doi.org/10.1016/j.apsoil.2006.12.001

    Article  Google Scholar 

  44. Chen Q, Liu S (2019) Identification and Characterization of the Phosphate-Solubilizing Bacterium Pantoea sp S32 in Reclamation Soil in Shanxi. China Front Microbiol 10:2171. https://doi.org/10.3389/fmicb.2019.02171

    Article  PubMed  Google Scholar 

  45. Chakkaravarthy VM, Arunachalam R, Vincent S, Paulkumar K, Annadnrai G (2010) Biodegradation of tricalcium phosphate by phosphate solubilizing bacteria. J Biol Sci 10(6):531–535. https://doi.org/10.3923/jbs.2010.531.535

    Article  Google Scholar 

  46. Perez E, Sulbaran M, Ball MM, Yarzabal LA (2007) Isolation and characterization of mineral phosphate-solubilizing bacteria naturally colonizing a limonitic crust in the south-eastern Venezuelan region. Soil Biol Biochem 39(11):2905–2914. https://doi.org/10.1016/j.soilbio.2007.06.017

    Article  CAS  Google Scholar 

  47. Delvasto P, Valverde A, Ballester A, Igual JM, Muñoz JA, González F, García C (2006) Characterization of brushite as a re-crystallization product formed during bacterial solubilization of hydroxyapatite in batch cultures. Soil Biol Biochem 38(9):2645–2654. https://doi.org/10.1016/j.soilbio.2006.03.020

    Article  CAS  Google Scholar 

  48. Seshadri S, Muthukumarasamy R, Lakshminarasimhan C, Ignacimuthu S (2000) Solubilization of inorganic phosphates by Azospirillum halopraeferan. Current Sci 79:565–567

    CAS  Google Scholar 

  49. Goenadi DH, Sugiarto Y (2000) Bioactivation of poorly soluble phosphate rocks with a phosphorus-solubilizing fungus. Soil Sci Soc Am J 64(3):927–932. https://doi.org/10.2136/sssaj2000.643927x

    Article  CAS  Google Scholar 

  50. Gupta M, Kiran S, Gulati A, Singh B, Tewari R (2012) Isolation and identification of phosphate solubilizing bacteria able to enhance the growth and aloin-A biosynthesis of Aloe barbadensis Miller. Microbiol res 167(6):358–363. https://doi.org/10.1016/j.micres.2012.02.004

    Article  PubMed  CAS  Google Scholar 

  51. Wei H, Peng C, Yang B, Song H, Li Q, Jiang L, Liu X (2018) Contrasting soil bacterial community, diversity, and function in two forests in China. Front Microbiol 9:1693. https://doi.org/10.3389/fmicb.2018.01693

    Article  PubMed  PubMed Central  Google Scholar 

  52. Jha A, Saxena J, Sharma V (2013) Investigation on phosphate solubilization potential of agricultural soil bacteria as affected by different phosphorus sources, temperature, salt, and pH. Commun Soil Sci Plan 44(16):2443–2458. https://doi.org/10.1080/00103624.2013.803557

    Article  CAS  Google Scholar 

  53. Meyer A, Focks A, Radl V, Keil D, Welzl G, Schöning I, Schloter M (2013) Different land use intensities in grassland ecosystems drive ecology of microbial communities involved in nitrogen turnover in soil. PLoS ONE. https://doi.org/10.1371/journal.pone.0073536

    Article  PubMed  PubMed Central  Google Scholar 

  54. Schöps R, Goldmann K, Herz K, Lentendu G, Schöning I, Bruelheide H, Buscot F (2018) Land-use intensity rather than plant functional identity shapes bacterial and fungal rhizosphere communities. Front Microbiol 9:2711. https://doi.org/10.3389/fmicb.2018.02711

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

The authors are thankful to the University Grants Commission, New Delhi, for providing the financial assistance to Rajinder Kaur, in the form of Junior Research Fellow under the scheme National Fellowship for OBC students.

Author information

Authors and Affiliations

Authors

Contributions

The research proposal was designed by Dr. SK, Ms. RK, performed the experimental work and paper writing. Final paper editing and improvement was followed by Dr. SK.

Corresponding author

Correspondence to Sukhminderjit Kaur.

Ethics declarations

Conflict of interest

Authors declare no conflict of interest (financial and non-financial).

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 37 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kaur, R., Kaur, S. Variation in the Phosphate Solubilizing Bacteria from Virgin and the Agricultural Soils of Punjab. Curr Microbiol 77, 2118–2127 (2020). https://doi.org/10.1007/s00284-020-02080-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-020-02080-6

Navigation