Skip to main content
Log in

Effect of vegetation on soil bacteria and their potential functions for ecological restoration in the Hulun Buir Sandy Land, China

  • Published:
Journal of Arid Land Aims and scope Submit manuscript

Abstract

To date, much of research on revegetation has focused on soil microorganisms due to their contributions in the formation of soil and soil remediation process. However, little is known about the soil bacteria and their functions respond to the diverse vegetational types in the process of vegetation restoration. Effects of dominated vegetation, i.e., Artemisia halodendron Turcz Ex Bess, Caragana microphylla Lam., Hedysarum fruticosum Pall. and Pinus sylvestris L. on bacterial community structures and their potential functions in the Hulun Buir Sandy Land, China were determined using high-throughput 16S rRNA gene sequencing and phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) in 2015. Although the dominant phyla of soil bacterial community among different types of vegetation, including Proteobacteria, Actinobacteria, Acidobacteria, Bacteroidetes and Firmicutes, were similar, the relative abundance of these dominant groups significantly differed, indicating that different types of vegetation might result in variations in the composition of soil bacterial community. In addition, functional genes of bacterial populations were similar among different types of vegetation, whereas its relative abundance was significantly differed. Most carbon fixation genes showed a high relative abundance in P. sylvestris, vs. recalcitrant carbon decomposition genes in A. halodendron, suggesting the variations in carbon cycling potential of different types of vegetation. Abundance of assimilatory nitrate reduction genes was the highest in P. sylvestris, vs. dissimilatory nitrate reduction and nitrate reductase genes in A. halodendron, indicating higher nitrogen gasification loss and lower nitrogen utilization gene functions in A. halodendron. The structures and functional genes of soil bacterial community showed marked sensitivities to different plant species, presenting the potentials for regulating soil carbon and nitrogen cycling.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Boeddinghaus R S, Marhan S, Berner D et al. 2019. Plant functional trait shifts explain concurrent changes in the structure and function of grassland soil microbial communities. Journal of Ecology, 107(5): 2197–2210.

    Google Scholar 

  • Cao H C, Chen R R, Wang L B, et al. 2016. Soil pH, total phosphorus, climate and distance are the major factors influencing microbial activity at a regional spatial scale. Scientific Reports, 6: 25815.

    Google Scholar 

  • Castro S P, Cleland E E, Wagner R, et al. 2019. Soil microbial responses to drought and exotic plants shift carbon metabolism. The ISME Journal, 13: 1776–1787.

    Google Scholar 

  • Che R X, Wang Y F, Li K X, et al. 2019. Degraded patch formation significantly changed microbial community composition in alpine meadow soils. Soil and Tillage Research, 195: 104426.

    Google Scholar 

  • Chen D M, Mi J, Chu P F, et al. 2015. Patterns and drivers of soil microbial communities along a precipitation gradient on the Mongolian Plateau. Landscape Ecology, 30: 1669–1682.

    Google Scholar 

  • Chen Y C, Sun J, Xie F T, et al. 2015. Litter chemical structure is more important than species richness in affecting soil carbon and nitrogen dynamics including gas emissions from an alpine soil. Biology and Fertility of Soils, 51: 791–800.

    Google Scholar 

  • Chen Y L, Xu T L, Veresoglou S D, et al. 2017. Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China. Soil Biology and Biochemistry, 110: 12–21.

    Google Scholar 

  • Cheng J M, Gang C C, Guo L, et al. 2017. Modification in Grassland Ecology under the Influence of Changing Climatic and Land Use Conditions. Plant Ecology: Traditional Approaches to Recent Trends. 43.

    Google Scholar 

  • Deng L, Peng C H, Huang C B, et al. 2019. Drivers of soil microbial metabolic limitation changes along a vegetation restoration gradient on the Loess Plateau, China. Geoderma, 353: 188–200.

    Google Scholar 

  • Du H S, Hasi E, Yang Y, et al. 2012. Landscape pattern change and driving force of blowout distribution in the Hulun Buir Sandy Grassland. Sciences in Cold and Arid Regions, 4: 431–438.

    Google Scholar 

  • Edgar R C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26(19: 2460–2461.

    Google Scholar 

  • Edgar R C, Haas B J, Clemente J C, et al. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27(16): 2194–2200.

    Google Scholar 

  • Erisman J W, Sutton M A, Galloway J, et al. 2008. How a century of ammonia synthesis changed the world. Nature Geoscience. 1. 636

    Google Scholar 

  • Evans S E, Wallenstein M D. 2014. Climate change alters ecological strategies of soil bacteria. Ecology Letters, 17(2): 155–164.

    Google Scholar 

  • Feng W, Zhang Y Q, Yan R, et al. 2019. Dominant soil bacteria and their ecological attributes across the deserts in northern China. European Journal of Soil Science, 1–12. doi: https://doi.org/10.1111/ejss.12866.

    Google Scholar 

  • Ferran G P, Virginia L, Yevgeniy M, et al. 2013. Temperature drives the continental-scale distribution of key microbes in topsoil communities. Science, 340: 1574–1577.

    Google Scholar 

  • Fierer N, Bradford M A, Jackson R B. 2007. Toward an ecological classification of soil bacteria. Ecology, 88(6: 1354–1364.

    Google Scholar 

  • Fierer N, Strickland M S, Liptzin D, et al. 2009. Global patterns in belowground communities. Ecology Letters, 12(11): 1238–1249.

    Google Scholar 

  • Fierer N, Ladau J, Clemente J C, et al. 2013. Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science, 342(6158: 621–624.

    Google Scholar 

  • Fu B, Qi Y B, Chang Q R. 2015. Impacts of revegetation management modes on soil properties and vegetation ecological restoration in degraded sandy grassland in farming-pastoral ecotone. International Journal of Agricultural and Biological Engineering, 8(1: 26–34.

    Google Scholar 

  • Goberna M, Pascual J A, García C, et al. 2007. Do plant clumps constitute microbial hotspots in semiarid Mediterranean patchy landscapes? Soil Biology and Biochemistry, 39(5: 1047–1054.

    Google Scholar 

  • Goecks J, Nekrutenko A, Taylor J. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology, 11(8): R86.

    Google Scholar 

  • Griffiths R I, Thomson B C, James P, et al. 2011. The bacterial biogeography of British soils. Environmental Microbiology, 13(6): 1642–1654.

    Google Scholar 

  • Gruber N, Galloway J N. 2008. An Earth-system perspective of the global nitrogen cycle. Nature, 451: 293–296.

    Google Scholar 

  • Guo J, Wang T, Xue X, et al. 2010. Monitoring aeolian desertification process in Hulunbir grassland during 1975–2006, Northern China. Environmental Monitoring and Assessment, 166: 563–571.

    Google Scholar 

  • Hacker N, Ebeling A, Gessler A, et al. 2015. Plant diversity shapes microbe-rhizosphere effects on P mobilisation from organic matter in soil. Ecology Letters, 18(12: 1356–1365.

    Google Scholar 

  • Hayat R, Ali S, Amara U, et al. 2010. Soil beneficial bacteria and their role in plant growth promotion: a review. Annals of Microbiology, 60: 579–598.

    Google Scholar 

  • Jangid K, Williams M A, Franzluebbers A J, et al. 2011. Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties. Soil Biology and Biochemistry, 43(10: 2184–2193.

    Google Scholar 

  • Jiang D M, Cao C Y, Zhang Y, et al. 2014. Plantations of native shrub species restore soil microbial diversity in the Horqin Sandy Land, northeastern China. Journal of Arid Land. 6. 445–453.

    Google Scholar 

  • Kim K Y, Jordan D, McDonald G. 1998. Enterobacter agglomerans, phosphate solubilizing bacteria, and microbial activity in soil: effect of carbon sources. Soil Biology and Biochemistry, 30(8–9): 995–1003.

    Google Scholar 

  • Kozich J J, Westcott S L, Baxter N T, et al. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Applied and Environmental Microbiology, 79(17): 5112–5120.

    Google Scholar 

  • Kuypers M M M, Marchant H K, Kartal B. 2018. The microbial nitrogen-cycling network. Nature Reviews Microbiology. 16. 263–276.

    Google Scholar 

  • Langille M G, Zaneveld J, Caporaso J G, et al. 2013. Predictive functional profiling of microbial communities usin. 16S rRNA marker gene sequences. Nature Biotechnology, 31: 814–821.

    Google Scholar 

  • Larsbrink J, Tuveng T R, Pope P B, et al. 2017. Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis. Journal of Proteomics, 156: 63–74.

    Google Scholar 

  • Li J R, Okin G S, Alvarez L, et al. 2007. Quantitative effects of vegetation cover on wind erosion and soil nutrient loss in a desert grassland of southern New Mexico, USA. Biogeochemistry, 85: 317–332.

    Google Scholar 

  • Li X R, Zhang P, Su Y G, et al. 2012. Carbon fixation by biological soil crusts following revegetation of sand dunes in arid desert regions of China: A four-year field study. Catena, 97: 119–126.

    Google Scholar 

  • Li Y F, Li Z W, Wang Z Y, et al. 2017. Impacts of artificially planted vegetation on the ecological restoration of movable sand dunes in the Mugetan Desert, northeastern Qinghai-Tibet Plateau. International Journal of Sediment Research, 32: 277–287.

    Google Scholar 

  • Liao C R, Liu B C, Xu Y N, et al. 2019. Effect of topography and protecting barriers on revegetation of sandy land, Southern Tibetan Plateau. Scientific Reports, 9: 6501.

    Google Scholar 

  • Liu Y M, Li X R, Xing Z S, et al. 2013. Responses of soil microbial biomass and community composition to biological soil crusts in the revegetated areas of the Tengger Desert. Applied Soil Ecology, 65: 52–59.

    Google Scholar 

  • Madsen E L. 2011. Microorganisms and their roles in fundamental biogeochemical cycles. Currrent Opinion in Biotechnology, 22(3): 456–464.

    Google Scholar 

  • Maestre F T, Quero J L, Gotelli N J, et al. 2012. Plant species richness and ecosystem multifunctionality in global drylands. Science, 335(6065: 214–218.

    Google Scholar 

  • Magoč T, Salzberg S L. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics, 27(21): 2957–2963.

    Google Scholar 

  • Marcel G, Richard D, Nico M. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters, 11(3: 296–310.

    Google Scholar 

  • Miyasaka T, Okuro T, Miyamori E, et al. 2014. Effects of different restoration measures and sand dune topography on short-and long-term vegetation restoration in northeast China. Journal of Arid Environments, 111: 1–6.

    Google Scholar 

  • Neilson J W, Quade J, Ortiz M, et al. 2012. Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles, 16: 553–566.

    Google Scholar 

  • Nelson M B, Martiny A C, Martiny J B. 2016. Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences, 113(29: 8033–8040.

    Google Scholar 

  • Orlando J, Alfaro M, Bravo L, et al. 2010. Bacterial diversity and occurrence of ammonia-oxidizing bacteria in the Atacama Desert soil during a “desert bloom” event. Soil Biology and Biochemistry, 42(7: 1183–1188.

    Google Scholar 

  • Özçelik M S, Gökbulak F, Şengönül K. 2019. Effect of vegetation patch size on selected chemical properties of soils under semiarid climate conditions. Forestist, 69: 117–123.

    Google Scholar 

  • Pei S F, Fu H, Wan C G. 2008. Changes in soil properties and vegetation following exclosure and grazing in degraded Alxa desert steppe of Inner Mongolia, China. Agriculture, Ecosystems & Environment, 124(1–2): 33–39.

    Google Scholar 

  • Prober S M, Leff J W, Bates S T, et al. 2015. Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide. Ecology Letters, 18(1: 85–95.

    Google Scholar 

  • Schimel J P, Schaeffer S M. 2012. Microbial control over carbon cycling in soil. Frontiers in Microbiology, 3: 348.

    Google Scholar 

  • Schneider T, Keiblinger K M, Schmid E, et al. 2012. Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. The ISME Journal, 6: 1749–1762.

    Google Scholar 

  • She W W, Bai Y X, Zhang Y Q, et al. 2018. Resource availability drives responses of soil microbial communities to short-term precipitation and nitrogen addition in a desert shrubland. Frontiers in Microbiology, 9: 186.

    Google Scholar 

  • Shihan A, Hättenschwiler S, Milcu A, et al. 2017. Changes in soil microbial substrate utilization in response to altered litter diversity and precipitation in a Mediterranean shrubland. Biology and Fertility of Soils, 53: 171–185.

    Google Scholar 

  • Sun L P, He LR, Wang G L, et al. 2019. Natural vegetation restoration of Liaodong oak forests rapidly increased the content and ratio of inert carbon in soil macroaggregates. Journal of Arid Land, 11(6: 928–938.

    Google Scholar 

  • Sun Y F, Zhang Y Q, Feng W, et al. 2017. Effects of xeric shrubs on soil microbial communities in a desert in northern China. Plant and Soil. 414. 281–294.

    Google Scholar 

  • Tiwari K, Gupta R K. 2013. Diversity and isolation of rare actinomycetes: an overview. Critical Reviews in Microbiology, 39(3): 256–294.

    Google Scholar 

  • Tu Q C, He Z L, Wu L Y, et al. 2017. Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem. Soil Biology and Biochemistry, 106: 99–108.

    Google Scholar 

  • Unc A, Maggs-Kölling G, Marais E, et al. 2019. Soil bacterial community associated with the dioecious Acanthosicyos horridus in the Namib Desert. Biology and Fertility of Soils, 55: 393–403.

    Google Scholar 

  • Vered S T, Yosef S. 2011. Soil microbial diversity in the vicinity of a Negev Desert shrub—Reaumuria negevensis. Microbial Ecology, 61: 64–81.

    Google Scholar 

  • Voriskova J, Baldrian P. 2013. Fungal community on decomposing leaf litter undergoes rapid successional changes. The ISME Journal, 7: 477–486.

    Google Scholar 

  • Walkley A J, Black I A. 1934. An examination of the degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Science, 37: 29–38.

    Google Scholar 

  • Wang B Z, Zhang C X, Liu J L, et al. 2012. Microbial community changes along a land-use gradient of desert soil origin. Pedosphere, 22(5: 593–603.

    Google Scholar 

  • Wang S K, Zhao X Y, Zhang T H, et al. 2013. Afforestation effects on soil microbial abundance, microbial biomass carbon and enzyme activity in dunes of Horqin Sandy Land, northeastern China. Sciences in Cold and Arid Regions, 5: 184–190.

    Google Scholar 

  • Wang X B, van Nostrand J D, Deng Y, et al. 2015. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China’s grasslands. FEMS Microbiology Ecology, 91(12): fiv133. doi: 10.1093/femsec/fiv133.

    Google Scholar 

  • Wang X B, Lu X T, Yao J, et al. 2017. Habitat-specific patterns and drivers of bacterial beta-diversity in China’s drylands. The ISME Journal, 11: 1345–1358.

    Google Scholar 

  • Wang X P, Quan G J, Pan Y X, et al. 2013. Comparison of hydraulic behaviour of unvegetated and vegetation stabilized sand dunes in arid desert ecosystems. Ecohydrology, 6(2: 264–274.

    Google Scholar 

  • Xiao E Z, Krumins V, Xiao T F, et al. 2017. Depth-resolved microbial community analyses in two contrasting soil cores contaminated by antimony and arsenic. Environmental Pollution, 221: 244–255.

    Google Scholar 

  • Yadav R S, Yadav B L, Chhipa B R, et al. 2011. Soil biological properties under different tree based traditional agroforestry systems in a semi-arid region of Rajasthan, India. Agroforestry Systems, 81: 195–202.

    Google Scholar 

  • Yang H T, Li X R, Wang Z R, et al. 2014. Carbon sequestration capacity of shifting sand dune after establishing new vegetation in the Tengger Desert, northern China. Science of the Total Environment, 478: 1–11.

    Google Scholar 

  • Yu L Z, Luo X S, Liu M, et al. 2015. Diversity of ionizing radiation-resistant bacteria obtained from the Taklimakan Desert. Journal of Basic Microbiology, 55(1: 135–140.

    Google Scholar 

  • Yuan J Y, Ouyang Z Y, Zheng H, et al. 2012. Effects of different grassland restoration approaches on soil properties in the southeastern Horqin sandy land, northern China. Applied Soil Ecology, 61: 34–39. (in Chinese)

    Google Scholar 

  • Zeng Q C, An S S, Liu Y. 2017. Soil bacterial community response to vegetation succession after fencing in the grassland of China. Science of the Total Environment, 609: 2–10.

    Google Scholar 

  • Zhang H F, Song X L, Wang C L, et al. 2013a. The effects of different vegetation restoration patterns on soil bacterial diversity for sandy land in Hulunbeier. Acta Ecologica Sinica, 33(4: 211–216. (in Chinese)

    Google Scholar 

  • Zhang H F, Li G, Song X L, et al. 2013b. Changes in soil microbial functional diversity under different vegetation restoration patterns for Hulunbeier Sandy Land. Acta Ecologica Sinica, 33(1: 38–44. (in Chinese)

    Google Scholar 

  • Zhang W, Zhang G S, Liu G X, et al. 2012. Bacterial diversity and distribution in the southeast edge of the Tengger Desert and their correlation with soil enzyme activities. Journal of Environmental Sciences, 24: 2004–2011.

    Google Scholar 

  • Zhang W, Xu Y D, Gao D X, et al. 2019. Ecoenzymatic stoichiometry and nutrient dynamics along a revegetation chronosequence in the soils of abandoned land and Robinia pseudoacacia plantation on the Loess Plateau, China. Soil Biology and Biochemistry, 134: 1–14.

    Google Scholar 

  • Zhang X M, Zhang G M, Chen Q S, et al. 2013. Soil bacterial communities respond to climate changes in a temperate steppe. PLoS ONE. 8. e78616.

    Google Scholar 

  • Zhang Y, Cao C Y, Cui Z B, et al. 2019. Soil bacterial community restoration along a chronosequence of sand-fixing plantations on moving sand dunes in the Horqin sandy land in northeast China. Journal of Arid Environments, 165: 81–87.

    Google Scholar 

  • Zhao L N, Liu Y B, Wang Z R, et al. 2019. Bacteria and fungi differentially contribute to carbon and nitrogen cycles during biological soil crust succession in arid ecosystems. Plant and Soil, 447: 379–392.

    Google Scholar 

  • Zhou Y, Qin Y Q, Liu X D, et al. 2019. Soil bacterial function associated with stylo (legume) and bahiagrass (grass) is affected more strongly by soil chemical property than by bacterial community composition. Frontiers in Microbiology. 10, 798

    Google Scholar 

Download references

Acknowledgements

This study was supported by the National Key Research and Development Program of China (2016YFC0500905), the National Natural Science Foundation of China (31600584), and the Fundamental Research Funds for the Central Universities (2015ZCQSB-02). We would like to thank the staff of the Yanchi Research Station, School of Soil and Water Conservation, Beijing Forestry University, Beijing, China, with special thanks to Dr. QIN Shugao, Dr. LAI Zongrui, Dr. SUN Yanfei, Dr. LIU Zhen, Dr. BAI Yuxuan and Dr. SHE Weiwei for their help with the field and laboratory work.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Wei Feng.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yan, R., Feng, W. Effect of vegetation on soil bacteria and their potential functions for ecological restoration in the Hulun Buir Sandy Land, China. J. Arid Land 12, 473–494 (2020). https://doi.org/10.1007/s40333-020-0011-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s40333-020-0011-z

Keywords

Navigation