Heterotrophic diazotrophs in a eutrophic temperate bay (Jiaozhou Bay) broadens the domain of N2 fixation in China's coastal waters
Graphical abstract
Introduction
N2 fixation is an essential source of bio-available fixed-N to the ocean, which plays a key role in marine biogeochemical cycles and impacts climate on a global scale (Capone et al., 2005; Karl et al., 2002). In recent years, relevant researches have extended the investigation of N2 fixation from oligotrophic open oceans (Ahmed et al., 2017; Capone et al., 2005; Karl et al., 2002) to dark, colder ecosystems, and coastal regions (Balis et al., 2012; Farnelid, 2013; Jiang et al., 2018; Mulholland et al., 2019; Rees et al., 2009; Shiozaki et al., 2017), where N2 fixation was originally thought to be insignificant. The view that N2 fixation contributes minimally to the N loading in coastal/estuarine and other N-replete ecosystems has been increasingly challenged (Damashek and Francis, 2017; Li et al., 2019a,b; Mulholland et al., 2019). The nitrogenase nifH genes from non-cyanobacterial diazotrophs (e.g. heterotrophic bacteria) had been suggested to be widespread, and may be more abundant in coastal and estuarine regions, even under N-replete conditions (Affourtit et al., 2001; Bombar et al., 2016; Jenkins et al., 2004), inferring the greater potential for N2 fixation in coastal waters relative to the open ocean (Farnelid, 2011, 2013) and the possible regulation of organic carbon on N2 fixation. Organic carbon is a major growth-limiting factor for oceanic heterotrophic and mixotrophic bacteria (Wambeke et al., 2008). The influence of dissolved organic carbon (DOC) on heterotrophic N2 fixation has been reported in both the open ocean (Moisander et al., 2014; Zehr and Karl, 2007) and coastal areas (Li et al., 2019a,b; Rahav et al., 2013). The enhancement of heterotrophic N2 fixation by particulate organic carbon (POC) has also been reported in the North Pacific subtropical gyre (Farnelid et al., 2018). Hence, the absence of N2 fixation in some circumstances is generally attributed to physical and chemical constraints in the marine environment, rather than the lack of genetic potential (Farnelid, 2013).
Jiaozhou Bay (JB, ~120°E, ~36°N), an inlet of the Yellow Sea (a marginal sea of the China seas), may be an ideal location to assess the occurrence and the dominant controls on N2 fixation in coastal waters subject to anthropogenic impact. There are several rivers flowing into the bay, with an average freshwater discharge of ~6.7 × 108 m−3 yr−1 (Sheng et al., 2014). Over the past 30 years, anthropogenic development (urbanization, industrialization, reclamation, etc.) has decreased the bay area from 535 km2 in 1863 to 343 km2 in 2012 (Ma et al., 2014). Further, human activity has caused an increase in nutrient content and the change of nutrient construction (Shen, 2001, 2006; Yuan et al., 2018; Zhao et al., 2010), and thus altered the annual variability of chlorophyll a (Chl a) concentrations and primary productivity (PP) (Sun et al., 2011). Though N2 fixation rates have not yet been reported to date, there are several evidences suggesting the occurrence of N2 fixation here: primarily, heterotrophic diazotrophic bacteria (mainly Alphaproteobacteria, Gammaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria) were detected in the coastal waters of JB in the summer of 2011 (Zhang et al., 2015a,b), thus confirming their diversity and wide distribution in marine and estuarine waters (Farnelid, 2013). Further, the occurrence of N2 fixation has been reported in the adjacent temperate Yellow Sea (Zhang et al., 2012). It is likely that diazotrophs may frequently enter JB from the Yellow sea, due to the relatively rapid mixing rate between the two water bodies (renewal time ~10 d; Yang et al., 2013). Finally, geochemical mass balance calculation, though of relatively large uncertainties, indicated a net new N input besides other known N sources (i.e., riverine input and aeolian deposition) in such eutrophic coastal waters (Yuan et al., 2018). N2 fixation may therefore be a potential candidate for this N source in JB.
As an interface between terrestrial and marine ecosystems, JB may also be suitable to assess the regulation of organic carbon on N2 fixation. Terrestrial inputs, including river inputs and wastewater discharge, bring large amount of organic carbon into JB (Li et al., 2010; Yang et al., 2010). In addition, phytoplankton is also an important source of organic carbon in JB (Yuan et al., 2018). Phytoplankton is a major source of ‘fresh’ organic carbon (Biddanda and Benner, 1997), playing a major role in shaping local nutrient fields and distributing available organic matter by releasing photosynthetic carbon (Kirchman et al., 2001). The bioavailability of organic matter in eutrophic coastal waters may provide significant benefit for non-cyanobacterial diazotrophs to be active (Zhang et al., 2015a,b). The effect of macroalgal blooms on diazotrophic abundance and community composition have been reported in the coastal surface waters in the Yellow Sea (Zhang et al., 2015a,b). These findings infer the possible correlation between phytoplankton-derived organic carbon and N2 fixation in coastal waters, which have been hypothesized in our previous study in the subtropical Daya Bay located in the northern South China sea (Li et al., 2019a,b).
The main goals of this study were as follows: (1) to measure the possible N2 fixation rates and determine the composition of nifH in JB, (2) to determine the influence of organic carbon on N2 fixation in JB, and (3) to identify the regulation of phytoplankon-derived organic carbon on N2 fixation. Our results will build upon previous knowledge of N2 fixation in coastal areas and provide new insights into the impacts of anthropogenic activities on coastal biochemical dynamics.
Section snippets
Study area and sample collection
Field sampling (5 cruises) were carried out from 2015 to 2017 (July 2015, January 2016, April 2016, November 2016, and May 2017). The sampling locations are shown in Fig. 1. Biological N2 fixation rates (BNF) and primary productivity (PP) were determined via isotope tracer assays. The concentrations of DOC and POC were also determined the potential controls of organic carbon on N2 fixation. DNA samples were collected at 3 stations (inner: S3; near the bay mouth: S7; outer: S14) in November
Physicochemical parameters
Sea surface temperatures (SST) throughout the sampling period ranged from 3.5 to 27.8 °C. The SST observed during the summer cruise in July 2015 were higher than other cruises (Table 1). In spring (April 2016 and May 2017) and summer (July 2015), SST of the inner bay were generally higher than the bay mouth (Fig. A1). SST observed in autumn (November 2016) and winter (January 2016) showed opposite distributions (Fig. A1). The average sea surface salinity (SSS) in JB was almost equal between all
Occurrence of N2 fixation in a eutrophic temperate bay
Our results confirmed the occurrence of N2 fixation in the eutrophic temperate waters of JB. BNFs in JB were higher than the reported values in the open areas of the Yellow Sea (0.01–0.30 nmol N L−1 h−1, Zhang et al., 2012) and fell in the range of reported values in some other coastal areas (Dong et al., 2008; Li et al., 2019a,b; Lin, 2014; Mulholland et al., 2019), suggesting that N-replete conditions in JB did not necessarily hinder N2 fixation. Our findings are consistent with recent
Conclusions
This study demonstrates the occurrence of N2 fixation under N-replete conditions in JB. Phytoplankton were observed to stimulate N2 fixation by increasing the bioavailability of organic carbon and/or by providing suitable environmental conditions for N2 fixation. Our study highlights the co-regulation of both physical and biological processes on N2 fixation in coastal waters, providing new insights into the constraints on N2 fixation and its related biochemical dynamics over a broader spatial
CRediT authorship contribution statement
Danyang Li: Writing - original draft. Hongmei Jing: Methodology. Run Zhang: Writing - review & editing. Weifeng Yang: Writing - review & editing. Min Chen: Writing - review & editing. Bo Wang: Investigation. Minfang Zheng: Methodology. Yusheng Qiu: Methodology.
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Acknowledgment
This work was supported by National Natural Science Foundation of China (41676174, 41721005), National Basic Research Program of China (2015CB452903), China Ministry of Science and Technology (2017FY201403), and the Fundamental Research Funds for the Central Universities (20720190146). We are grateful to the bay program team members for helping while sampling and sharing of background information. We wish to thank Dr. N.W. Chen, L.M. Lai, S.B. Chen, X.Y. Mou and J.J. Li for technical assistance
References (80)
- et al.
Marine non-cyanobacterial diazotrophs: moving beyond molecular detection
Trends Microbiol.
(2016) - et al.
Inorganic and organic nitrogen uptake by phytoplankton and heterotrophic bacteria in the stratified Mid-Atlantic Bight
Estuar. Coast Shelf Sci.
(2010) - et al.
Dynamics of organic carbon under different inorganic nitrogen levels and phytoplankton composition
Estuar. Coast Shelf Sci.
(2012) - et al.
Environmental changes reflected by sedimentary geochemistry in recent hundred years of Jiaozhou Bay, North China
Environ. Pollut.
(2007) - et al.
Glucose fluxes and concentrations of dissolved combined neutral sugars (polysaccharides) in the Ross Sea and Polar Front Zone, Antarctica
Deep-Sea Res. Part II
(2001) Historical changes in nutrient structure and its influences on phytoplankton composition in Jiaozhou Bay
Estuar. Coast Shelf Sci.
(2001)The solubility of nitrogen, oxygen andargon in water and seawater
Deep-Sea Res. Oceanogr. Abstr.
(1970)- et al.
Fluxes, seasonal patterns and sources of various nutrient species (nitrogen, phosphorus and silicon) in atmospheric wet deposition and their ecological effects on Jiaozhou Bay, North China
Sci. Total Environ.
(2017) - et al.
Distributions and seasonal variations of dissolved carbohydrates in the Jiaozhou Bay, China
Estuar. Coast Shelf Sci.
(2010) - et al.
Spatial and seasonal variations, partitioning and fluxes of dissolved and particulate nutrients in Jiaozhou Bay
Continent. Shelf Res.
(2018)
Nitrogen fixation: nitrogenase genes and gene expression
Methods Microbiol.
Macroalgal blooms favor heterotrophic diazotrophic bacteria in nitrogen-rich and phosphorus-limited coastal surface waters in the Yellow Sea
Estuar. Coast. Shelf Sci.
Distribution of nitrogen-fixing microorganisms along the neuse river estuary, North Carolina
Microb. Ecol.
Nitrogen fixation rates in the eastern arabian sea
Estuar. Coast. Shelf Sci.
Production and utilization of dissolved organic carbon during in situ phytoplankton photosynthesis measurements
Int. Rev. Hydrobiol.
Dissolved organic matter uptake by Trichodesmium in the southwest Pacific
Sci. Rep.
Dissolved organic matter influences N2 fixation in the new Caledonian lagoon (western tropical South Pacific)
Front. Mar. Sci.
Significant N2 fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries
ISME J.
Dinitrogen fixation and dissolved organic nitrogen fueled primary production and particulate export during the VAHINE mesocosms experiment (New Caledonia lagoon)
Biogeosciences
Large-river delta-front estuaries as natural “recorders” of global environmental change
Proc. Natl. Acad. Sci. U.S.A.
Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by marine phytoplankton
Limnol. Oceanogr.
Nitrogen fixation and identification of potential diazotrophs in the Canadian Arctic
Global Biogeochem. Cycles
Filtration via conventional glass fiber filters in 15N2 tracer assays fails to capture all nitrogen-fixing prokaryotes
Front. Mar. Sci.
Nitrogen fixation by Trichodesmium spp.: an important source of new nitrogen to the tropical and subtropical North Atlantic Ocean
Global Biogeochem. Cycles
Organic carbon partitioning during spring phytoplankton blooms in the Ross Sea polynya and the Sargasso Sea
Limnol. Oceanogr.
Utilization and turnover of labile dissolved organic matter by bacterial heterotrophs in eastern North Pacific surface waters
Mar. Ecol. Prog. Ser.
Temporal patterns of nitrogenaseg gene (nifH) expression in the oligotrophic North Pacific Ocean
Appl. Environ. Microbiol.
The contamination of commercial 15N2 gas stocks with 15N–labeled nitrate and ammonium and consequences for nitrogen fixation measurements
PloS One
Microbial nitrogen cycling in estuaries: from genes to ecosystem processes
Estuar. Coast
Spatial and seasonal variations of Cyanobacteria and their nitrogen fixation rates in Sanya Bay, South China Sea
Sci. Mar.
Phosphonate utilization by the globally important marine diazotroph Trichodesmium
Nature
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
PloS One
Distribution and Activity of Nitrogen-Fixing Bacteria in Marine and Estuarine Waters
Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre
ISME J.
Characterization of diatom-cyanobacteria symbioses on the basis of nifH, hetR and 16S rRNA sequences
Environ. Microbiol.
Redfield revisited: variability of C:N:P in marine microalgae and its biochemical basis
Eur. J. Phycol.
Direct detection of heterotrophic diazotrophs associated with planktonic aggregates
Sci. Rep.
Diversity and activity of nitrogen‐fixing communities across ocean basins
Limnol. Oceanogr.
Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray
Appl. Environ. Microbiol.
Seasonal and spatial changes in Trichodesmium associated with physicochemical properties in East China Sea and southern Yellow Sea
J. Geophys. Res. Biogeosci.
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