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Estimation of leaf color variances of Cotinus coggygria based on geographic and environmental variables

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Abstract

Capturing leaf color variances over space is important for diagnosing plant nutrient and health status, estimating water availability as well as improving ornamental and tourism values of plants. In this study, leaf color variances of the Eurasian smoke tree, Cotinus coggygria were estimated based on geographic and climate variables in a shrub community using generalized elastic net (GELnet) and support vector machine (SVM) algorithms. Results reveal that leaf color varied over space, and the variances were the result of geography due to its effect on solar radiation, temperature, illumination and moisture of the shrub environment, whereas the influence of climate were not obvious. The SVM and GELnet algorithm models were similar estimating leaf color indices based on geographic variables, and demonstrates that both techniques have the potential to estimate leaf color variances of C. coggygria in a shrubbery with a complex geographical environment in the absence of human activity.

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References

  • Alauddin M, Nghiemb HS (2010) Do instructional attributes pose multicollinearity problems? An empirical exploration. Econ Anal Policy 40(3):351–361

    Google Scholar 

  • Archetti M, Richardson AD, O’Keefe J, Delpierre N (2013) Predicting climate change impacts on the amount and duration of autumn colors in a New England forest. PLoS ONE 8(3):e57373

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ben-Hur A, Weston J (2010) A user’s guide to support vector machines. Methods Mol Biol 609:223–239

    CAS  PubMed  Google Scholar 

  • Broadhursta D, Goodacre R, Jones A, Rowland JJ, Kell DB (1997) Genetic algorithms as a method for variable selection in multiple linear regression and partial least squares regression, with applications to pyrolysis mass spectrometry. Anal Chim Acta 348:71–86

    Google Scholar 

  • Chartrand R (2007) Exact reconstruction of sparse signals via nonconvex minimization. IEEE Signal Process Lett 14(10):707–710

    Google Scholar 

  • Chen PF, Haboudane D, Tremblay N, Wang JH, Vigneault P, Li BG (2010) New spectral indicator assessing the efficiency of crop nitrogen treatment in corn and wheat. Remote Sens Environ 114(9):1987–1997

    Google Scholar 

  • Cortes C, Vapnik V (1995) Support-vector networks. Mach Learn 20(3):273–297

    Google Scholar 

  • Dutta Gupta S, Ibaraki Y, Pattanayak AK (2013) Development of a digital image analysis method for real-time estimation of chlorophyll content in micropropagated potato plants. Plant Biotechnol Rep 7(1):91–97

    Google Scholar 

  • Efron B, Hastie T, Johnstone I, Tibshirani R (2004) Least angle regression. Ann Stat 32(2):407–451

    Google Scholar 

  • Estrella N, Menzel A (2006) Responses of leaf colouring in four deciduous tree species to climate and weather in Germany. Climate Res 32:253–267

    Google Scholar 

  • Fernandez-Gallego JA, Kefauver SC, Vatter T, Aparicio Gutiérrez N, Nieto-Taladriz MT, Araus JL (2019) Low-cost assessment of grain yield in durum wheat using RGB images. Eur J Agron 105:146–156

    Google Scholar 

  • Friedman JH (2012) Fast sparse regression and classification. Int J Forecast 28:722–738

    Google Scholar 

  • Garonna I, Jong R, Wit AJW, Mücher CA, Schmid B, Schaepman ME (2015) Strong contribution of autumn phenology to changes in satellite-derived growing season length estimates across Europe (1982–2011). Glob Change Biol 20(11):3457–3470

    Google Scholar 

  • Gerhardt N, Schwolow S, Rohn S, Pérez-Cacho PR, Galán-Soldevilla H, Arce L, Weller P (2019) Quality assessment of olive oils based on temperature-ramped HS-GC-IMS and sensory evaluation: comparison of different processing approaches by LDA, kNN, and SVM. Food Chem 286(15):307–308

    CAS  PubMed  Google Scholar 

  • Hao Z, Zhao HL, Zhang C, Wang H, Jiang YZ, Yi ZY (2019) Estimating winter wheat area based on an SVM and the variable fuzzy set method. Remote Sens Lett 10(4):343–352

    Google Scholar 

  • Hirose K (2019) msgps: Degrees of Freedom of Elastic Net, Adaptive Lasso and Generalized Elastic Net. R package version 1.3.1

  • Hirose K, Tateishi S, Konishi S (2011) Efficient algorithm to select tuning parameters in sparse regression modeling with regularization. https://arxiv.org/pdf/1109.2411.pdf. Accessed 6 Apr 2020

  • Karcher DE, Richardson MD (2003) Quantifying turfgrass color using digital image analysis. Crop Sci 43:943–951

    Google Scholar 

  • Keenan TF, Richardson AD (2015) The timing of autumn senescence is affected by the timing of spring phenology: implications for predictive models. Glob Change Biol 21(7):2634–2641

    Google Scholar 

  • Keenan T, Gray J, Friedl M, Toomey M, Bohrer G, Hollinger D, Munger JW, Okeefe J, Schmid H, Wing I, Yang B, Richardson A (2014) Net carbon uptake has increased through warming-induced changes in temperate forest phenology. Nat Clim Change 4(7):598–604

    CAS  Google Scholar 

  • Kobayashi H, Yunus AP, Nagai S, Sugiura K, Kim Y, Van Dam B, Nagano H, Zona D, Harazono Y, Bret-Harte MS, Ichii K, Ikawa H, Iwata H, Oechel WC, Ueyama M, Suzuki R (2016) Latitudinal gradient of spruce forest understory and tundra phenology in Alaska as observed from satellite and ground-based data. Remote Sens Environ 177:160–170

    Google Scholar 

  • Lang M, Nilson T, Kuusk A, Pisek J, Korhonen L, Uri V (2017) Digital photography for tracking the phenology of an evergreen conifer stand. Agric For Meteorol 246:15–21

    Google Scholar 

  • Lev-Yadun S (2010) The shared and separate roles of aposematic (warning) coloration and the co-evolution hypothesis in defending autumn leaves. Plant Signal Behav 5(8):937–939

    PubMed  PubMed Central  Google Scholar 

  • Lev-Yadun S, Gould KS (2007) What do red and yellow autumn leaves signal? Bot Rev 73(4):279–289

    Google Scholar 

  • Li Y, Chen D, Walker CN, Angus JF (2010) Estimating the nitrogen status of crops using a digital camera. Field Crops Res 118(3):221–227

    Google Scholar 

  • Li F, Mistele B, Hu YC, Chen XP, Schmidhalter U (2014) Reflectance estimation of canopy nitrogen content in winter wheat using optimised hyperspectral spectral indices and partial least squares regression. Eur J Agron 52:198–209

    CAS  Google Scholar 

  • Liang WZ, Kirk KR, Greene JK (2018) Estimation of soybean leaf area, edge, and defoliation using color image analysis. Comput Electron Agric 150:41–51

    Google Scholar 

  • Liu M, Gao CG (2010) Investigation and analysis of plant landscape during autumn and winter in Kunming city. J Landsc Res 2(10):22–26

    Google Scholar 

  • Prasad AM, Iverson LR (2003) Little’s range and FIA importance value database for 135 Eastern US tree species. Northeastern Research Station, USDA Forest Service, Delaware

    Google Scholar 

  • R Development Core Team (2018) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna

    Google Scholar 

  • Rigon JPG, Capuani S, Fernandes DM, Guimarães TM (2016) A novel method for the estimation of soybean chlorophyll content using a smartphone and image analysis. Photosynthetica 54(4):559–566

    CAS  Google Scholar 

  • Robertson AR (1977) The CIE 1976 color-difference formula. Color Res Appl 2(1):7–11

    Google Scholar 

  • Rorie RL, Purcell LC, Karcher DE, Andy King C (2011) The assessment of leaf nitrogen in corn from digital images. Crop Sci 51(5):2174

    Google Scholar 

  • Rozenstein O, Adamowski J (2017) Linking spaceborne and ground observations of autumn foliage senescence in Southern Québec, Canada. Remote Sens 9(6):630

    Google Scholar 

  • Smith AR (1978) Color gamut transform pairs. In: SIGGRAPH 78 conference proceedings, vol 12(3), pp 12‒19

  • Soil Survey Staff (2010) Keys to soil taxonomy, 11th edn. USDA-Natural Resources Conservation Service, Washington

    Google Scholar 

  • Sun QY (2011) Sparse approximation property and stable recovery of sparse signals from noisy measurements. IEEE Trans Signal Process 59(10):5086–5090

    Google Scholar 

  • Vapnik V (1998) Statistical learning theory. Adaptive and learning systems for signal processing, communications, and control. Wiley, New York

    Google Scholar 

  • Vesali F, Omid M, Kaleita A, Mobli H (2015) Development of an android app to estimate chlorophyll content of corn leaves based on contact imaging. Comput Electron Agric 116:211–220

    Google Scholar 

  • Vollmann J, Walter H, Sato T, Schweiger P (2011) Digital image analysis and chlorophyll metering for phenotyping the effects of nodulation in soybean. Comput Electron Agric 75(1):190–195

    Google Scholar 

  • Wang XP, Fang JY, Tang ZY, Zhu B (2006) Climatic control of primary forest structure and DBH–height allometry in Northeast China. For Ecol Manag 234(1–3):264–274

    Google Scholar 

  • Wang Y, Wang DJ, Zhang G, Wang J (2013) Estimating nitrogen status of rice using the image segmentation of G-R thresholding method. Field Crops Res 149:33–39

    Google Scholar 

  • Wang Y, Wang DJ, Shi PH, Omasa K (2014) Estimating rice chlorophyll and leaf nitrogen concentration with a digital still color camera under natural light. Plant Methods 10:36

    PubMed  PubMed Central  Google Scholar 

  • Wiwart M, Fordoński G, Żuk-Gołaszewska K, Suchowilska E (2009) Early diagnostics of macronutrient deficiencies in three legume species by color image analysis. Comput Electron Agric 65(1):125–132

    Google Scholar 

  • Xie YY, Wang XJ, Silander JA (2015) Deciduous forest responses to temperature, precipitation, and drought imply complex climate change impacts. Proc Natl Acad Sci USA 112(44):13585–13590

    CAS  PubMed  Google Scholar 

  • Xie YY, Wang XJ, Wilson AM, Silander JA (2018) Predicting autumn phenology: how deciduous tree species respond to weather stressors. Agric For Meteorol 250–251:127–137

    Google Scholar 

  • Yuan HH, Yang GJ, Li CC, Wang YJ, Liu JG, Yu HY, Feng HK, Xu B, Zhao XQ, Yang X (2017) Retrieving soybean leaf area index from unmanned aerial vehicle hyperspectral remote sensing: analysis of RF, ANN, and SVM regression models. Remote Sens 9(4):309

    Google Scholar 

  • Zhang XY, Goldberg MD (2011) Monitoring fall foliage coloration dynamics using time-series satellite data. Remote Sens Environ 115(2):382–391

    Google Scholar 

  • Zhang Y, Ye WZ, Zhang JJ (2017) A generalized elastic net regularization with smoothed ℓq penalty for sparse vector recovery. Comput Optim Appl 68(2):437–454

    Google Scholar 

  • Zou H, Hastie T (2005) Regularization and variable selection via the elastic net. J R Stat Soc 67(5):768–768

    Google Scholar 

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Acknowledgements

We thank the Chongqing Meteorological Information and Technical Support Center for providing climate data.

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Correspondence to Yun Liu.

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Project funding: The work was supported by the Fundamental Research Funds for the Central Universities (Grant No. XDJK2019D041), the Research Innovation Programs for graduate student of Chongqing, China (Grant No. CYS19123), and the National Undergraduate Innovation and Entrepreneurship Training Programs (Grant No. 201810635015).

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Corresponding editor: Tao Xu.

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Tan, X., Wu, J., Liu, Y. et al. Estimation of leaf color variances of Cotinus coggygria based on geographic and environmental variables. J. For. Res. 32, 609–622 (2021). https://doi.org/10.1007/s11676-020-01118-6

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  • DOI: https://doi.org/10.1007/s11676-020-01118-6

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