Skip to main content
Log in

Development and characterization of novel microsatellite markers in chestnut tiger butterfly Parantica sita (Lepidoptera: Nymphalidae) using next-generation sequencing

  • Technical Note
  • Published:
Applied Entomology and Zoology Aims and scope Submit manuscript

Abstract

While one subspecies of chestnut tiger butterfly (Parantica sita, Lepitoptera: Nymphalidae) undertakes seasonal migration between Taiwan and Japan, it is still unknown whether the nominate subspecies, P. s. sita, migrates seasonally in southwest China. To understand the potential migration of P. s. sita, it is necessary to investigate the genetic differentiation among populations. In our study, we developed 18 novel microsatellite markers from the transcriptome using next-generation sequencing methods. These polymorphic markers were tested on 89 individuals from 4 populations of P. sita. The allele numbers ranged from 2 to 19. The average polymorphism information content values in each population ranged from 0.34 to 0.40. The observed (Ho) and expected (He) heterozygosity of each locus in each population ranged from 0.043 to 0.870 and 0.043 to 0.833, respectively. These informative microsatellite markers would be helpful for discovering the facts of P. sita long-distance migration in China.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Armstrong RA (2014) When to use the Bonferroni correction. Ophthalmic Physiol Opt 34:502–508

    Article  Google Scholar 

  • Bryja J, Kanuch P, Fornuskova A, Bartonicka T, Rehak Z (2009) Low population genetic structuring of two cryptic bat species suggests their migratory behaviour in continental Europe. Biol J Linn Soc 96:103–114

    Article  Google Scholar 

  • Cheng WWW, Pun HSF, Chung OM, Fukumura T, Kanazawa I (2015) Parantica sita niphonica (Lepidoptera: Nymphalidae) migrated from Japan to Hong Kong, southern China in 2013. Bull Osaka Mus Nat Hist 69:25–28

    Google Scholar 

  • Choi WH, Chae DY, Lee CM, Noshita H, Hirai N (2010) First recorded migration of the butterfly, Parantica sita (Lepidoptera: Danainae), from Japan to South Korea. Lepidoptera Sci 61:120–122 (In Japanese)

    Google Scholar 

  • Chou I (1994) Monographia rhopalocerorum sinensium (Monograph of Chinese butterflies), 2nd edn. Henan Scientific and Technological Publishing House, Zhengzhou, pp 276–277

    Google Scholar 

  • Dakin EE, Avise JC (2004) Microsatellite null alleles in parentage analysis. Heredity 93:504–509

    Article  CAS  Google Scholar 

  • Dharmarajan G, Beatty WS, Rhodes OE Jr (2013) Heterozygote deficiencies caused by a Wahlund effect: dispelling unfounded expectations. J Wildl Manag 77:226–234

    Article  Google Scholar 

  • Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567

    Article  Google Scholar 

  • Fukuda H (1991) Seasonal migration of the chestnut tiger, Parantica sita in Japan. Insectarium 28:4–13 (In Japanese)

    Google Scholar 

  • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29:644–652

    Article  CAS  Google Scholar 

  • Hirai N, Ishii M (1997) Seasonal occurrence of the chestnut tiger butterfly, Parantica sita (Lepidoptera: Danaidae), at 3 habitats in the Kii Peninsula, central Japan. Lepidoptera Sci 48:223–233 (In Janpanese)

    Google Scholar 

  • Honda K, Honda Y, Matsumoto J, Tsuruta Y, Yagi W, Omura H, Honda H (2016) Production and sex-pheromonal activity of alkaloid-derived androconial compounds in the danaine butterfly, Parantica sita (Lepidoptera: Nymphalidae: Danainae). Biol J Linn Soc 119:1036–1059

    Article  Google Scholar 

  • Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106

    Article  Google Scholar 

  • Kanazawa I, Cheng WWW, Pun HSF, Sakiyama Y, Doi H (2015) First migration record of chestnut tiger butterfly, Parantica sita niphonica (Moore, 1883) (Lepidoptera: Nymphalidae: Danainae) from Japan to Hong Kong and longest recorded movement by the species. Pan-Pac Entomol 91:91–97

    Article  Google Scholar 

  • Kang TH, Han SH, Park SJ (2016) Development of 12 microsatellite markers in Dorcus titanus castanicolor (Motschulsky, 1861) (Lucanidae, Coleoptera) from Korea using next-generation sequencing. Int J Mol Sci 17:1621

    Article  Google Scholar 

  • Kofler R, Schloetterer C, Lelley T (2007) SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics 23:1683–1685

    Article  CAS  Google Scholar 

  • Kurita M (2016) Wonder of the 2,500-km migration of chestnut tiger butterflies (Parantica sita niphonica): synchronicity, precognition, and use of fluctuations. J Int Soc Life Inform Sci 34:69–72 (In Janpanese)

    Google Scholar 

  • Lyons JI, Pierce AA, Barribeau SM, Sternberg ED, Mongue AJ, de Roode JC (2012) Lack of genetic differentiation between monarch butterflies with divergent migration destinations. Mol Ecol 21:3433–3444

    Article  Google Scholar 

  • Nishitani G, Nagai S, Lian CL, Yamaguchi H, Sakamoto S, Yoshimatsu S, Oyama K, Itakura S, Yamaguchi M (2007) Development of compound microsatellite markers in the harmful red tide species Chattonella ovata (Raphidophyceae). Mol Ecol Notes 7:1251–1253

    Article  CAS  Google Scholar 

  • Rousset F (2008) GENEPOP’007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8:103–106

    Article  Google Scholar 

  • Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18:233–234

    Article  CAS  Google Scholar 

  • Sellas AB, Bassos-Hull K, Perez-Jimenez JC, Angulo-Valdes JA, Bernal MA, Hueter RE (2015) Population structure and seasonal migration of the spotted eagle ray, Aetobatus narinari. J Hered 106:266–275

    Article  CAS  Google Scholar 

  • Tao SQ, Cao B, Tian CM, Liang YM (2018) Development and characterization of novel genic-SSR markers in apple-juniper rust pathogen Gymnosporangium yamadae (Pucciniales: Pucciniaceae) using next-generation sequencing. Int J Mol Sci 19:11718

    Article  Google Scholar 

  • Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG (2012) Primer3-new capabilities and interfaces. Nucleic Acids Res 40:e115

    Article  CAS  Google Scholar 

  • Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

  • Wang YZ, Cao LJ, Zhu JY, Wei SJ (2016) Development and characterization of novel microsatellite markers for the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae) using next-generation sequencing. Int J Mol Sci 17:362

    Article  Google Scholar 

Download references

Acknowledgements

We appreciate their helps for collecting specimens: Shaoji Hu and Huihong Zhang from Yunnan University, Du Feng from Simian Mountain Forest Resources Serve Center, Xicui Du from Southwest University, Qingrong Wang from Zunyi Normal University, and Pingfan Jia from Southwest Forestry University. We also thank Dan Zhang, Liangzhi Lu and Di Wang from Peking University for technical support, and Yuping Meng for routine work in laboratory. In particularly, we thank Dr. Iain Bruce from Institute of Molecular Medicine, Peking University, for his contribution to language revision of the manuscript.

Funding

This research received no external funding.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Rong-Jiang Wang.

Ethics declarations

Conflict of interest

The authors declare no conflict of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 39 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Hu, P., Huang, CL., Luo, MX. et al. Development and characterization of novel microsatellite markers in chestnut tiger butterfly Parantica sita (Lepidoptera: Nymphalidae) using next-generation sequencing. Appl Entomol Zool 55, 281–286 (2020). https://doi.org/10.1007/s13355-020-00675-w

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13355-020-00675-w

Keywords

Navigation