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Licensed Unlicensed Requires Authentication Published by De Gruyter August 11, 2020

Core 1 O-N-acetylgalactosamine (O-GalNAc) glycosylation in the human cell nucleus

  • Romina B. Cejas , Yohana C. Garay , Sofia de la Fuente , Ricardo D. Lardone and Fernando J. Irazoqui ORCID logo EMAIL logo
From the journal Biological Chemistry

Abstract

Glycosylation is a very frequent post-translational modification in proteins, and the initiation of O-N-acetylgalactosamine (O-GalNAc) glycosylation has been recently described on relevant nuclear proteins. Here we evaluated the nuclear incorporation of a second sugar residue in the biosynthesis pathway of O-GalNAc glycans to yield the terminal core 1 glycan (C1G, Galβ3GalNAcαSer/Thr). Using confocal microscopy, enzymatic assay, affinity chromatography, and mass spectrometry, we analyzed intact cells, purified nuclei and soluble nucleoplasms to identify the essential factors for C1G biosynthesis in the cell nucleus. The enzyme C1GalT1 responsible for C1G synthesis was detected inside the nucleus, while catalytic activity of C1Gal-transferase was present in nucleoplasm and purified nuclei. In addition, C1G were detected in the nucleus inside of intact cells, and nuclear proteins exposing C1G were also identified. These evidences represent the first demonstration of core 1 O-GalNAc glycosylation of proteins in the human cell nucleus. These findings reveal a novel post-translational modification on nuclear proteins, with relevant repercussion in epigenetic and chemical biology areas.


Corresponding author: Fernando J. Irazoqui, Centro de Investigaciones en Química Biológica de Córdoba, CIQUIBIC, CONICET and Departamento de Química Biológica Ranwel Caputto, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, Córdoba, X5000HUA, Argentina, E-mail:

Romina B. Cejas and Yohana C. Garay: These authors contributed equally to this work.


Funding source: CONICET

Award Identifier / Grant number: PIP 11220150100226

Funding source: ANPCyT

Funding source: FONCyT

Award Identifier / Grant number: PICT 2018-03228

Funding source: MinCyT

Funding source: SeCyT, UNC

Award Identifier / Grant number: 200062

Acknowledgments

This study was supported by funding (to F.J.I.) from CONICET (PIP 11220150100226); ANPCyT, FONCyT (PICT 2018-03228), MinCyT, Pcia Cba (PID 48 Res. 144/18); and SeCyT, UNC in Argentina; and Mizutani Foundation for Glycoscience (No. 200062), Japan. The authors are grateful to S. Deza and G. Schachner for cell culture assistance, and Drs. C. Mas and C. Sampedro for confocal microscopy assistance. Y.C.G. has fellowship assistance from CONICET. R.D.L. and F.J.I. are Career Investigators of CONICET.

  1. Conflict of interest statement: The authors declare no conflict of interest.

References

Andrews, F.H., Strahl, B.D., and Kutateladze, T.G. (2016). Insights into newly discovered marks and readers of epigenetic information. Nat. Chem. Biol. 12: 662–668, https://doi.org/10.1038/nchembio.2149.Search in Google Scholar PubMed PubMed Central

Baltz, A.G., Munschauer, M., Schwanhäusser, B., Vasile, A., Murakawa, Y., Schueler, M., Youngs, N., Penfold-Brown, D., and Drew, K., Milek, M., et al. (2012). The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 46: 674–690, https://doi.org/10.1016/j.molcel.2012.05.021.Search in Google Scholar PubMed

Baßler, J. and Hurt, E. (2019). Eukaryotic ribosome assembly. Annu. Rev. Biochem. 88: 281–306, https://doi.org/10.1146/annurev-biochem-013118-110817.Search in Google Scholar PubMed

Bennett, E.P., Mandel, U., Clausen, H., Gerken, T.A., Fritz, T.A., and Tabak, L.A. (2012). Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family. Glycobiology 22: 736–756, https://doi.org/10.1093/glycob/cwr182.Search in Google Scholar PubMed PubMed Central

Bond, M.R. and Hanover, J.A. (2015). A little sugar goes a long way: the cell biology of O-GlcNAc. J. Cell Biol. 208: 869–880, https://doi.org/10.1083/jcb.201501101.Search in Google Scholar PubMed PubMed Central

Brockhausen, I. (2006). Mucin-type O-glycans in human colon and breast cancer: glycodynamics and functions. EMBO Rep. 7: 599–604, https://doi.org/10.1038/sj.embor.7400705.Search in Google Scholar PubMed PubMed Central

Brockhausen, I. and Stanley, P. (2017). O-GalNAc glycans. In: Essentials of glycobiology. Cold Spring Harbor, New York, pp. 1–9.Search in Google Scholar

Castello, A., Fischer, B., Eichelbaum, K., Horos, R., Beckmann, B.M., Strein, C., Davey, N.E., Humphreys, D.T., and Preiss, T., Steinmetz, L.M., et al. (2012). Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149: 1393–1406, https://doi.org/10.1016/j.cell.2012.04.031.Search in Google Scholar PubMed

Cejas, R.B., Lorenz, V., Garay, Y.C., and Irazoqui, F.J. (2019). Biosynthesis of O-N-acetylgalactosamine glycans in the human cell nucleus. J. Biol. Chem. 294: 2997–3011, https://doi.org/10.1074/jbc.ra118.005524.Search in Google Scholar PubMed PubMed Central

Collas, P., Lund, E.G., and Oldenburg, A.R. (2014). Closing the (nuclear) envelope on the genome: How nuclear lamins interact with promoters and modulate gene expression. BioEssays 36: 75–83, https://doi.org/10.1002/bies.201300138.Search in Google Scholar PubMed

Freeze, H.H., Hart, G.W., and Schnaar, R.L. (2017). Glycosylation precursors. In: Essentials of glycobiology. Cold Spring Harbor, New York.Search in Google Scholar

Gaudet, P., Livstone, M.S., Lewis, S.E., and Thomas, P.D. (2011). Phylogenetic-based propagation of functional annotations within the gene ontology consortium. Brief. Bioinform. 12: 449–462, https://doi.org/10.1093/bib/bbr042.Search in Google Scholar PubMed PubMed Central

Gong, F., Chiu, L.Y., and Miller, K.M. (2016). Acetylation reader proteins: linking acetylation signaling to genome maintenance and cancer. PLoS Genet. 12: e1006272, https://doi.org/10.1371/journal.pgen.1006272.Search in Google Scholar PubMed PubMed Central

Hart, G.W. (2019). Nutrient regulation of signaling and transcription. J. Biol. Chem. 294: 2211–2231, https://doi.org/10.1074/jbc.aw119.003226.Search in Google Scholar PubMed PubMed Central

Hart, G.W., Housley, M.P., and Slawson, C. (2007). Cycling of O-linked β-N-acetylglucosamine on nucleocytoplasmic proteins. Nature 446: 1017–1022, https://doi.org/10.1038/nature05815.Search in Google Scholar PubMed

Hoja-Łukowicz, D., Szwed, S., Laidler, P., and Lityńska, A. (2018). Proteomic analysis of Tn-bearing glycoproteins from different stages of melanoma cells reveals new biomarkers. Biochimie 151: 14–26, https://doi.org/10.1016/j.biochi.2018.05.010.Search in Google Scholar PubMed

Irazoqui, F.J., Vides, M.A., and Nores, G.A. (1999). Structural requirements of carbohydrates to bind Agaricus bisporus lectin. Glycobiology 9: 59–64, https://doi.org/10.1093/glycob/9.1.59.Search in Google Scholar PubMed

Irazoqui, F.J., Vozari-Hampe, M.M., Lardone, R.D., Villarreal, M.A., Sendra, V.G., Montich, G.G., Trindade, V.M., Clausen, H., and Nores, G.A. (2005). Fine carbohydrate recognition of Euphorbia milii lectin. Biochem. Biophys. Res. Commun. 336: 14–21, https://doi.org/10.1016/j.bbrc.2005.08.028.Search in Google Scholar PubMed

Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., and Mann, M. (2005). Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell. Proteomics 4: 1265–1272, https://doi.org/10.1074/mcp.M500061-MCP200.Search in Google Scholar PubMed

Ju, T., Brewer, K., D’Souza, A., Cummings, R.D., and Canfield, W.M. (2002). Cloning and expression of human core 1 β1,3-galactosyltransferase. J. Biol. Chem. 277: 178–186, https://doi.org/10.1074/jbc.m109060200.Search in Google Scholar PubMed

Ju, T. and Cummings, R.D. (2002). A unique molecular chaperone Cosmc required for activity of the mammalian core 1 3-galactosyltransferase. Proc. Natl. Acad. Sci. USA 99: 16613–16618, https://doi.org/10.1073/pnas.262438199.Search in Google Scholar PubMed PubMed Central

Kitazume-Kawaguchi, S., Inoue, S., Inoue, Y., and Lennarz, W.J. (1997). Identification of sulfated oligosialic acid units in the O-linked glycan of the sea urchin egg receptor for sperm. Proc. Natl. Acad. Sci. USA 94: 3650–3655, https://doi.org/10.1073/pnas.94.8.3650.Search in Google Scholar PubMed PubMed Central

Lorenz, V., Ditamo, Y., Cejas, R.B., Carrizo, M.E., Bennett, E.P., Clausen, H., Nores, G.A., and Irazoqui, F.J. (2016). Extrinsic functions of lectin domains in O-N-acetylgalactosamine glycan biosynthesis. J. Biol. Chem. 291: 25339–25350, https://doi.org/10.1074/jbc.m116.740795.Search in Google Scholar

Munkley, J. (2019). The glycosylation landscape of pancreatic cancer. Oncol. Lett. 17: 2569–2575, https://doi.org/10.3892/ol.2019.9885.Search in Google Scholar

Piller, V., Piller, F., and Fukuda, M. (1990). Biosynthesis of truncated O-glycans in the T cell line Jurkat: localization of O-glycan initiation. J. Biol. Chem. 265: 9264–9271, Available at: https://www.jbc.org/.10.1016/S0021-9258(19)38842-8Search in Google Scholar

Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., and Saalfeld, S., Schmid, B., et al. (2012). Fiji: An open-source platform for biological-image analysis. Nat. Methods 9: 676–682, https://doi.org/10.1038/nmeth.2019.Search in Google Scholar PubMed PubMed Central

Shechter, D., Dormann, H.L., Allis, C.D., and Hake, S.B. (2007). Extraction, purification and analysis of histones. Nat. Protoc. 2: 1445–1457, https://doi.org/10.1038/nprot.2007.202.Search in Google Scholar PubMed

Sindrewicz, P., Lian, L.Y., and Yu, L.G. (2016). Interaction of the oncofetal Thomsen–Friedenreich antigen with galectins in cancer progression and metastasis. Front. Oncol. 6: 79, https://doi.org/10.3389/fonc.2016.00079.Search in Google Scholar PubMed PubMed Central

Srivastava, S., and Foltz, D.R. (2018). Posttranslational modifications of CENP-A: marks of distinction. Chromosoma 127: 279–290, https://doi.org/10.1007/s00412-018-0665-x.Search in Google Scholar PubMed PubMed Central

Steentoft, C., Vakhrushev, S.Y., Joshi, H.J., Kong, Y., Vester-Christensen, M.B., Katrine, T., Schjoldager, B.G., Lavrsen, K., and Dabelsteen, S., Pedersen, N.B., et al. (2013). Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology. EMBO J. 32: 1478–1488, https://doi.org/10.1038/emboj.2013.79.Search in Google Scholar PubMed PubMed Central

Steentoft, C., Vakhrushev, S.Y., Vester-Christensen, M.B., Schjoldager, K.T., Kong, Y., Bennett, E.P., Mandel, U., Wandall, H., Levery, S.B., and Clausen, H. (2011). Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines. Nat. Methods 8: 977–982, https://doi.org/10.1038/nmeth.1731.Search in Google Scholar PubMed

Tessarz, P., Santos-Rosa, H., Robson, S.C., Sylvestersen, K.B., Nelson, C.J., Nielsen, M.L., and Kouzarides, T. (2014). Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification. Nature 505: 564–568, https://doi.org/10.1038/nature12819.Search in Google Scholar PubMed PubMed Central

Th’ng, J.P.H., Sung, R., Ye, M., and Hendzel, M.J. (2005). H1 family histones in the nucleus: control of binding and localization by the C-terminal domain. J. Biol. Chem. 280: 27809–27814, https://doi.org/10.1074/jbc.M501627200.Search in Google Scholar

Uhlén, M., Fagerberg, L., Hallström, B.M., Lindskog, C., Oksvold, P., Mardinoglu, A., Sivertsson, Å., Kampf, C., and Sjöstedt, E., Asplund, A., et al. (2015). Tissue-based map of the human proteome. Science 347: 1260419, https://doi.org/10.1126/science.1260419.Search in Google Scholar

Wang, Y., Guo, Y.R., Liu, K., Yin, Z., Liu, R., Xia, Y., Tan, L., Yang, P., and Lee, J.H., Li, X.J., et al. (2017). KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase. Nature 552: 273–277, https://doi.org/10.1038/nature25003.Search in Google Scholar

Xia, L. and McEver, R.P. (2006). Targeted disruption of the gene encoding core 1 β1-3-galactosyltransferase (T-Synthase) causes embryonic lethality and defective angiogenesis in mice. Methods Enzymol. 416: 314–331, https://doi.org/10.1016/S0076-6879(06)16021-8.Search in Google Scholar

Xie, W. and Burke, B. (2016). Lamins. Curr. Biol. 26: R348–R350. https://doi.org/10.1016/j.cub.2016.01.055.Search in Google Scholar PubMed

Yang, Z., Halim, A., Narimatsu, Y., Joshi, H.J., Steentoft, C., Schjoldager, K.T.B.G., Schulz, M.A., Natalie, R., and Sealover, N.R., Kayser, K.J., et al. (2014). The GalNAc-type O-Glycoproteome of CHO cells characterized by the SimpleCell strategy. Mol. Cell. Proteomics 13: 3224–3235, https://doi.org/10.1074/mcp.m114.041541.Search in Google Scholar PubMed PubMed Central

Yu, L.G. (2007). The oncofetal Thomsen-Friedenreich carbohydrate antigen in cancer progression. Glycoconj. J. 24: 411–420, https://doi.org/10.1007/s10719-007-9034-3.Search in Google Scholar PubMed


Supplementary Material

The online version of this article offers supplementary material (https://doi.org/10.1515/hsz-2019-0448).


Received: 2019-12-26
Accepted: 2020-04-07
Published Online: 2020-08-11
Published in Print: 2020-08-27

© 2020 Walter de Gruyter GmbH, Berlin/Boston

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