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Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation

Parasites & Vectors volume 13, Article number: 162 (2020) Cite this article

Abstract

Background

While immune responses to the murine hookworm Nippostrongylus brasiliensis have been investigated, signaling pathways regulating development of infectious larvae (iL3) are not well understood. We hypothesized that N. brasiliensis would use pathways similar to those controlling dauer development in the free-living nematode Caenorhabditis elegans, which is formally known as the “dauer hypothesis.”

Methods

To investigate whether dafachronic acid activates the N. brasiliensis DAF-12 homolog, we utilized an in vitro reporter assay. We then utilized RNA-Seq and subsequent bioinformatic analyses to identify N. brasiliensis dauer pathway homologs and examine regulation of these genes during iL3 activation.

Results

In this study, we demonstrated that dafachronic acid activates the N. brasiliensis DAF-12 homolog. We then identified N. brasiliensis homologs for members in each of the four canonical dauer pathways and examined their regulation during iL3 activation by either temperature or dafachronic acid. Similar to C. elegans, we found that transcripts encoding antagonistic insulin-like peptides were significantly downregulated during iL3 activation, and that a transcript encoding a phylogenetic homolog of DAF-9 increased during iL3 activation, suggesting that both increased insulin-like and DAF-12 nuclear hormone receptor signaling accompanies iL3 activation. In contrast to C. elegans, we observed a significant decrease in transcripts encoding the dauer transforming growth factor beta ligand DAF-7 during iL3 activation, suggesting a different role for this pathway in parasitic nematode development.

Conclusions

Our data suggest that canonical dauer pathways indeed regulate iL3 activation in the hookworm N. brasiliensis and that DAF-12 may be a therapeutic target in hookworm infections.

Background

The human hookworms Necator americanus and Ancylostoma duodenale infect 500 to 700 million people globally, resulting in a significant disease burden in tropical and developing countries [1]. While the murine parasitic nematode Nippostrongylus brasiliensis is phylogenetically distinct from the hookworm species responsible for human disease [2], key aspects of the life-cycle are similar, including blood-feeding in the adult form [3] and a skin-penetrating infectious form that is developmentally arrested at the third larval stage (iL3) [4]. Since suitable non-human hosts do not exist for N. americanus and A. duodenale [5], N. brasiliensis is often utilized as a model for immunological studies of host responses to hookworm infection and can also be used to study mechanisms controlling hookworm development.

Hookworm larvae shed in host feces actively feed on bacteria during the first two larval stages before arresting their development as iL3. Although they are non-feeding, iL3 can persist in the soil for months due to stored lipids and are protected from desiccation by a plugged buccal cavity and retention of a sheath, which is the shed, but retained, L2 cuticle [4]. Once they encounter a host, iL3 rapidly penetrate the skin, exsheath, lose their buccal plug, and resume feeding, which is a hallmark of activation [6, 7]. In the canine hookworm A. caninum, iL3 require a combination of serum, glutathione and a host-like temperate of 37 °C for optimal resumption of feeding [8, 9]. While 37 °C is required for N. americanus exsheathment [10], only ~25% of N. americanus iL3 resume feeding at 37 °C in culture media and the percentage of larvae feeding does not increases with the addition of serum and/or glutathione [11]; thus, the requirements for optimal resumption of feeding are unknown in this species. In contrast, N. brasiliensis iL3 can activate, as evidenced by resumption of feeding, solely by incubation in culture media at 37 °C; this temperature-dependent activation is independent of serum and/or glutathione [12].

While the environmental cues that stimulate hookworm iL3 activation in N. brasiliensis have been investigated, the signaling pathways that transduce the stimuli are not well understood. A long-standing hypothesis in the field, known as the “dauer hypothesis”, posits that hookworm iL3 undergo arrest using similar genetic mechanisms as those controlling dauer arrest in the free-living nematode Caenorhabditis elegans [13, 14]. Four canonical dauer pathways regulate C. elegans dauer arrest: cyclic guanosine monophosphate (cGMP) signaling [15], dauer transforming growth factor β (TGFβ) signaling mediated by the DAF-7 ligand [16], insulin/insulin-like growth factor 1 (IGF-1) signaling (IIS) mediated by a complex mixture of agonistic and antagonistic insulin/IGF-1-like peptides (ILPs) [17] and a DAF-12 nuclear hormone receptor regulated by dafachronic acid steroid hormones that are synthesized by the cytochrome P450 DAF-9 [18, 19]. While some dauer pathways appear to have conserved roles in regulating iL3 development in parasitic nematodes, others do not [14].

In hookworms, pharmacological studies suggest that cGMP, IIS, and DAF-12 signaling pathways regulate iL3 development. In A. caninum, addition of a cGMP analog stimulates resumption of feeding in iL3 [20]. Furthermore, the muscarinic agonist oxotremorine can stimulate A. caninum iL3 recovery, while the muscarinic antagonist atropine can inhibit feeding; analogous studies in C. elegans suggest that this neuronal signaling is upstream of IIS [21]. In both Ancylostoma spp. and N. brasiliensis, the phosphatidylinositol 3-kinase inhibitor LY294002 can block resumption of feeding [12, 22], presumably by blocking IIS. In A. caninum and N. brasiliensis, iL3 activation can be blocked by the cytochrome P450 inhibitor ketoconazole [12, 23], presumably by inhibiting a DAF-9-like enzyme capable of producing dafachronic acids. Additionally, Δ7-dafachronic acid can stimulate iL3 feeding in A. caninum; however, LY294002-mediated inhibition of feeding cannot be rescued by addition of Δ7-dafachronic acid, suggesting that DAF-12 signaling may be parallel to IIS in the parasite [23]. While these studies suggest a conserved role for canonical dauer pathways in regulating both C. elegans dauer and hookworm iL3 development, studies of dauer TGFβ signaling are incongruous with this pattern. Transcripts of A. caninum daf-7 are maximal in iL3, whereas C. elegans daf-7 transcripts are downregulated during dauer arrest [24].

In this study, we systematically investigated the roles of canonical dauer pathways during iL3 activation in hookworms. To this end, we first demonstrated that dafachronic acids activate the N. brasiliensis DAF-12 nuclear hormone receptor. We then activated N. brasiliensis iL3 using both a host-like temperature of 37 °C and Δ7-dafachronic acid and subsequently quantified changes in transcript abundance for N. brasiliensis homologs in each of the canonical dauer pathways using RNA-Seq. We found that ILP-encoding transcripts are modulated by both temperature- and dafachronic acid-mediated activation, while daf-7 transcripts decrease during iL3 activation. We also identified transcripts encoding cytochrome P450s that may be responsible for producing dafachronic acid in the parasite.

Methods

Maintenance of Nippostrongylus brasiliensis

Nippostrongylus brasiliensis was maintained in Sprague-Dawley rats, and iL3 were prepared/recovered from infected rat fecal cultures by the Baermann apparatus, as previously described [25]. Briefly, rat fecal culture was suspended in room temperature H2O or phosphate-buffered saline (PBS), allowing larvae to migrate into the media and gravity sediment. For experimental infections, 2000–4000 iL3 were prepared in 0.5 ml or less volume of media (PBS or water) and injected subcutaneously into a rat sedated with general anesthesia by inhalation of isoflurane.

In vitro activation of N. brasiliensis iL3 and RNA extraction

Seven days after experimental infection, coprocultures were started on three consecutive days with sample A, B, and C representing fecal collection on days 7, 8, and 9, respectively. Rat feces were moistened with sterile water and mixed with coarsely granulated autoclaved charcoal; this mixture was placed on a moistened filter paper in a sterile Petri dish and coprocultures were incubated at 26 °C for two weeks. Subsequently, iL3 were prepared/recovered from rat coprocultures by the Baermann apparatus [25]. After the wash step, larvae were counted and axenized with Roswell Park Memorial Institute (RPMI) media supplemented with 25 mM HEPES and 1% penicillin/streptomycin for 40 min. Subsequently, iL3 were washed with sterile PBS and then resuspended in sterile RPMI media supplemented with L-Glutamine and 25 mM HEPES. Larvae from each sample were dispersed equally, in 10 ml aliquots, into each well of 6-well plates (Sample A = 7560 iL3/well, Sample B = 6066 iL3/well, and Sample C = 8400 iL3/well) and then half of the wells treated with vehicle (ethanol) and half with 10 μM (25S)-Δ7-dafachronic acid (CAS 949004-12-0) [26, 27]. Larvae were subsequently incubated at 20 °C, 26 °C or 37 °C for 24 hours (h).

Treatment was terminated after 24 h, larvae collected, culture media removed, and larvae resuspended in RNA-STAT60 (AMS Biotechnology Limited, Milton, UK); larvae were then snap-frozen using liquid nitrogen. Total RNA was extracted using a phenol-chloroform extraction method. Total RNA was DNase-I treated (Roche, Basel, Switzerland) and subsequently purified using an RNeasy purification kit (Qiagen, Hilden, Germany). Total RNA was analyzed on a Bioanalyzer 2100 (Agilent, Santa Clara, USA) to determine level of degradation; only RNA with a RIN Score of 9.0 or higher was used. Total RNA concentration was determined using a Qubit fluorometer (Thermo Fisher Scientific, Waltham, USA).

Resumption of feeding of iL3 was assessed by collecting iL3 from coprocultures incubated at 26 °C for seven days by Baermann funnel. The iL3 were washed and resuspended in RPMI as previously described. Approximately 100 iL3 were transferred to each well of a 96-well plate and incubated with either vehicle (ethanol) or Δ7-dafachronic acid at 22 °C, 26 °C or 37 °C for 22 h. Subsequently, fluorescein isothiocyanate-bovine serum albumin (FITC-BSA) at 50 mg/ml was added to each well and cultures incubated for an additional 2 h. The iL3 were then transferred to tubes, washed three times with PBS, and presence/absence of ingested FITC-BSA observed by fluorescent microscopy.

RNA-Seq

Libraries were prepared using 1 μg of total DNase-treated RNA using the TruSeq Stranded Total RNA LT Sample Prep Kit (Illumina, San Diego, USA), with the total RNA depleted of rRNA before strand-specific cDNA synthesis. Adapter-ligated libraries were polymerase chain reaction (PCR) amplified and purified with AmpureXP beads, then validated again on the Tapestation 4200. Individual libraries were normalized and pooled using the Qubit and sequenced on the NextSeq 500 (Illumina) using V2.5 reagents. Raw data were then de-multiplexed and converted to fastq files using bcl2fastq v2.17 (Illumina); raw reads are available under BioProject ID PRJNA574186.

Read processing, mapping, and de novo assembly

Fastqc files were inspected using FastQC v0.11.7 [28] and trimmed of index sequences and low-quality bases using Trimmomatic v.0.38 [29] and the options ILLUMINACLIP:2:30:10:3, LEADING:5, TRAILING:5, SLIDINGWINDOW:4:5, and MINLEN:50; removal of index sequences was confirmed using FastQC. Trimmed reads were then depleted of contaminating rRNA sequences using bbduk.sh (BBMap v38.06) [30] and the following reference sequences: a N. brasiliensis rDNA scaffold constructed using 18S rDNA (GenBank: AJ920356), ITS1 (AY332646), ITS2 (AY333380), and 28S rDNA (AM039748) together with de novo assembled transcripts to deduce ETS and 5.8S rDNA sequences, the 5S rDNA sequence with ETS sequences identified with a BLAST search using the Haemonchus contortus 5S rDNA (HCU32122) and mtDNA sequences (AP017690). Processed reads were then mapped to the N. brasiliensis genome (WormBaseParaSite v9; BioProject PRJEB511) using HISAT2 v2.1.0 and the options –dta, –rna-strandness RF, –max-intronlen 50000 [31] and BAM files generated using SAMtools v1.7 [32]. De novo assembly was performed by first merging trimmed forward and reverse reads from all of the samples in this study using bbmerge.sh (BBMap v38.06) with maxstrictness parameters and trimmed to q-score > 20; transcripts were then de novo assembled using Trinity v2.3 [33, 34] on Galaxy [35]. De novo assembled transcripts are available under BioProject ID PRJNA574186.

Transcript identification

Caenorhabditis elegans and H. contortus homologs were used as local BLAST search queries against the N. brasiliensis genome using Geneious v10.2.2 (Biomatters Ltd., Auckland, New Zealand) to identify contigs with homology. Hits were manually annotated in Geneious using aligned RNA-Seq reads in the Integrated Genome Viewer v2.4.10 [36, 37] as a guide. When transcripts were split between > 1 genomic contig/scaffold, de novo assembled RNA-Seq reads were used as a guide to reconstruct full-length sequences when possible. Annotated coding sequences (Additional file 1: Data S1, Additional file 2: Data S2) were used to predict N. brasiliensis protein sequences (Additional file 3: Data S3), which were used as BLAST search queries to confirm gene identity. Protein alignments using ClustalW and neighbor-joining phylogenetic trees in Geneious were used to resolve the identity of similar N. brasiliensis proteins, including cytochrome P450s and SMAD proteins in the TGFβ pathway. Insulin-like peptides were identified using BLAST searches of both the N. brasiliensis genome and de novo assembled transcriptome translated in all six reading frames; BLAST hits were manually screened for conserved cystine residues with appropriate spacing, a conserved glycine after the first cystine, conserved hydrophobic residues, and a predicted signal peptide.

Alignment of insulin-like peptide protein sequences was performed using ClustalW in Geneious and manually adjusted; signal peptides were predicted using SignalP-5.0, and key residues were identified by manual inspection [38, 39]. Alignment of the ligand-binding domains of the predicted DAF-7 encoding transcripts from C. elegans (GenBank: NP497265), H. contortus (GenBank: ACQ84508), N. americanus (GenBank: XP013301606), and N. brasiliensis was performed using ClustalW in Geneious.

Cloning and expression of N. brasiliensis cytochrome P450 homologs

A pCMX-derived expression vector [40] that incorporates a C-terminal hemagglutinin (HA) tag was created by digesting the plasmid with BamHI and NheI (New England BioLabs, Ipswich, USA), and the short insert, created by annealing the oligonucleotides BamHI-HA-NheI-F and BamHI-HA-NheI-R (sequences in Additional file 4: Data S4), was ligated into the digested vector using T4 DNA ligase (NEB); the reaction mixture used to transform chemically competent Escherichia coli Turbo cells (NEB) using the manufacturer’s instructions. The insert of the recombinant plasmid was sequenced using the primers pCMV-1F and pCMX-2R (sequences in Additional file 4: Data S4); this resulted in the plasmid pJS96, which was used for expression of C-term HA-tagged N. brasiliensis cytochrome P450 transcripts.

Total RNA was purified from N. brasiliensis iL3 that were either treated with vehicle or dafachronic acid and treated with DNase; subsequently, cDNA was synthesized from 290 ng (vehicle-treated) or 540 ng (dafachronic acid-treated) DNase-treated total RNA using ProtoScript II and an oligo dT primer according to the manufacturer’s instructions (NEB). Coding sequences (excluding the stop codons) of Nbr-cyp-14a7, Nbr-cyp-22a1, Nbr-cyp-32a1, Nbr-cyp-42a1, and Nbr-cyp-43a1 were amplified using Q5 DNA polymerase (NEB) and primers with restriction sites (sequences in Additional file 4: Data S4). PCR products were purified by polyethylene glycol (PEG) precipitation and were double-digested with either KpnI or XhoI and BamHI (NEB); the pJS96 vector was similarly digested and also treated with rSAP (NEB). Digested PCR products were purified using the Monarch PCR and DNA Cleanup Kit (NEB), while the digested pJS96 vector was purified via gel extraction using the Monarch Gel Extraction Kit (NEB); subsequently, inserts were ligated using T4 DNA ligase (NEB) and the manufacturer’s instructions. Ligation reaction products were used to transform chemically competent E. coli Turbo cells (NEB). Plasmids were isolated from single colonies and sequenced using the primers pCMV-1F and pCMX-2R, resulting in the plasmids pJS160 (Nbr-cyp-14a7), pJS161 (Nbr-cyp-22a1), pJS162 (Nbr-cyp-32a1), pJS163 (Nbr-cyp-42a1), and pJS164 (Nbr-cyp-43a1), which include a CMV promoter driving expression of a C-terminally HA-tagged N. brasiliensis coding sequence with an SV40 terminator.

Cloning N. brasiliensis daf-12

Expression vectors containing A. caninum DAF-12 and C. elegans DAF-12, as well as the pCMX parent vector, have been previously described [18, 23]. To construct a similar expression vector for N. brasiliensis DAF-12, the 5’-end was amplified from iL3-derived cDNA using the SMARTer RACE 5’/3’ Kit (Takara Bio USA Inc., Mountain View, USA) and the 3’-end was amplified from iL3-derived cDNA using the 3’ RACE System for Rapid Amplification for cDNA Ends (Invitrogen, Carlsbad, USA); the 5’- and 3’-ends were fused by overlap-extension PCR (primer sequences in Additional file 4: Data S4). The PCR product was inserted into the pCMX expression vector and the insert verified by sequencing.

In vitro DAF-12 reporter assays

Co-transfection and luciferase reporter assays were performed in human embryonic kidney (HEK) 293 cells, as previously described [23]. Briefly, co-transfections in HEK293 cells were performed in 96-well plates using 50 ng of luciferase reporter, 20 ng of CMX-β-galactosidase reporter, and either 15 ng of CMX-DAF-12 receptor expression plasmid or CMX vector control plasmid. Reporter plasmids were constructed by inserting DAF-12 response elements and their 10-bp genomic flanking sequences into a TK-luc reporter plasmid. Eight hours post-transfection, cells were treated with either vehicle (ethanol), (25S)-Δ4-dafachronic acid (CAS 23017-97-2), or Δ7-dafachronic acid; luciferase and β-galactosidase activities were then measured 16 h later. Relative luciferase units (RLU) were normalized to β-galactosidase activity. This was repeated in triplicate.

Transcript abundance quantification and differential expression analysis

Nippostrongylus brasiliensis transcripts were predicted for each sample using StringTie v.1.3.4d [31] and the options: –rf, -f 0.15, and a GTF file containing the manually annotated dauer pathway transcripts. Resulting GTF files were subsequently merged using StringTie –merge, and the resulting merged GTF annotation file manually corrected (Additional file 5: Data S5). Read counts for N. brasiliensis transcripts were quantified for each sample using StringTie; only reads that mapped to transcripts in the merged annotation file were used for quantification. Read counts for genes were calculated using the prepDE.py script with the StringTie package. Differential expression analysis and transcript quantification was performed using EdgeR v3.24.1 [41], using trimmed mean of M values (TMM) normalization (Additional file 6: Data S6). For significance, a minimum log2 fold change of one, a P-value adjusted threshold of < 0.05 and P-value adjustment method of Benjamini & Hochberg for false-discovery-rate were used (Additional file 7: Data S7).

Data visualization

Abundances of insulin-like peptide-encoding transcripts and the DAF-7-encoding transcript were plotted using EdgeR-calculated counts per million reads mapped (CPM) values in GraphPad Prism v.7.04 (GraphPad Software, Inc., San Diego, USA). Pharmacological studies of dafachronic acid-mediated activation of DAF-12 were plotted in GraphPad Prism. The heat map depicting abundance of transcripts in the dauer TGFβ pathway was constructed using row-scaled CPM values in heatmap.2 (gplots v3.0.1.1) in R; similarly, the heat map depicting abundance of cytochrome P450-encoding transcripts was constructed using row-scaled CPM values in heatmap.2 and a dendrogram constructed using the Manhattan method for calculating clustering distance. When transcripts for a single gene were split over multiple contigs/scaffolds, the fragment with the most abundant CPM was plotted.

Results

Nippostrongylus brasiliensis DAF-12 is activated by dafachronic acid

In C. elegans, the nuclear hormone receptor DAF-12 is epistatic to cGMP signaling, IIS, and dauer TGFβ signaling [42, 43] and is regulated by a class of steroid ligands known as dafachronic acids [18]. Dafachronic acid induces dauer recovery in C. elegans [18] and iL3 activation in both H. contortus and Strongyloides stercoralis [23, 44,45,46]. Furthermore, Δ7-dafachronic acid activates the ligand-binding domain of DAF-12 in Ancylostoma spp. and N. americanus [23, 47]. To determine whether the N. brasiliensis DAF-12 homolog is similarly activated by dafachronic acid, we expressed Nbr-daf-12 in HEK293 cells along with a daf-12 response element driving a luciferase reporter. Similar to other species, we found that Nbr-DAF-12 is activated by Δ7-dafachronic acid (EC50 = 115 nM) and to a lesser extent by Δ4-dafachronic acid (EC50 = 379 nM) (Fig. 1a). We then compared the Δ7-dafachronic acid response of Nbr-DAF-12 to the response of DAF-12 homologs from A. caninum and C. elegans. We found that Nbr-DAF-12 responds more weakly to Δ7-dafachronic acid than DAF-12 from other species (Fig. 1b).

Fig. 1
figure 1

Dafachronic acid is an agonist of N. brasiliensis DAF-12. aIn vitro, both Δ7-dafachronic acid (Δ7-DA) and Δ4-dafachronic acid (Δ4-DA) act as agonists for N. brasiliensis nuclear hormone receptor Nbr-DAF-12, although Δ4-dafachronic acid is a weaker agonist. b In comparison to other clade V/clade 9 nematode species, N. brasiliensis DAF-12 responds more weakly to Δ7-dafachronic acid than DAF-12 from either the canine hookworm A. caninum (Aca-DAF-12) or the free-living C. elegans (Cel-DAF-12). a, b Co-transfection assays were performed in HEK293 cells in biological triplicate; luciferase activity was quantified in relative light units and the maximal reading observed scaled to 100%. Data represent the mean ± standard deviation of triplicate assays

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RNA-Seq of iL3 activated by temperature or dafachronic acid

While pharmacological studies have demonstrated roles for cGMP signaling [20], IIS [22, 48], and dafachronic acid signaling [23] in hookworm activation, transcriptional regulation of dauer signaling pathways during N. brasiliensis activation has not been studied. To determine how these pathway components are regulated during iL3 activation and the role of dafachronic acid signaling in this process, we utilized RNA-Seq to examine differences in transcript abundance in N. brasiliensis iL3 activated by temperature and/or dafachronic acid (Fig. 2). Since N. brasiliensis iL3 can be activated solely by incubation at 37 °C in RPMI media [12], we sought to compare differences in transcript abundance in iL3 cultured at 20 °C or 26 °C to iL3 cultured at 37 °C, as iL3 only resume feeding when cultured in the vehicle control at 37 °C (Additional file 8: Table S1). Since Δ7-dafachronic acid stimulates iL3 resumption of feeding at non-permissive temperatures (Additional file 8: Table S1), we also compared transcript abundances in iL3 activated by dafachronic acid at the non-permissive temperatures of 20 °C and 26 °C, as well as the permissive temperature of 37 °C, to iL3 in temperature-matched vehicle controls.

Fig. 2
figure 2

Culture conditions of N. brasiliensis iL3 and RNA-Seq experimental design. Rats were experimentally infected with iL3; after patency (1 week), stool was collected for three consecutive days and larvae cultured for two weeks at 26 °C. Subsequently, iL3 were isolated and cultured for 24 h with either Δ7-dafachronic acid (DA) or vehicle (ethanol) at 20 °C, 26 °C or 37 °C for both treatments. Each condition was performed in triplicate, with sample A derived from the stool culture on the first day of collection, sample B on the second day, and sample C on the third day. Total RNA was then isolated from iL3 and used to construct RNA-Seq libraries

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In order to identify canonical dauer signaling pathway components in N. brasiliensis, we performed reciprocal BLAST searches of the N. brasiliensis genome using C. elegans or H. contortus protein sequences as queries, because both species are clade V/clade 9 nematodes and dauer pathway homologs have been identified in H. contortus [49, 50]. Since the N. brasiliensis genome assembly is highly fragmented, resulting in some genes being split amongst two or more contigs/scaffolds, we also utilized de novo assembled transcripts to manually reconstruct coding sequences of each gene. Together, we were able to identify the key signaling pathway components in each of the four canonical dauer pathways in N. brasiliensis (Fig. 3). We then sought to examine differences in the regulation of key transcripts in these signaling pathways during the initial phase of iL3 activation.

Fig. 3
figure 3

(Adapted from [39])

Hypothesized dauer signaling during N. brasiliensis iL3 activation. Using reciprocal BLAST searches, we identified the homologs diagrammed above of canonical dauer pathway signaling molecules in the N. brasiliensis genome and de novo assembled transcriptome. We hypothesize that GPCRs in the chemosensory neurons receive cues from the host such as temperature and host-specific chemicals resulting in production of ligands for insulin/IGF-1 and dauer TGFβ signaling pathways. Additionally, we hypothesize that a dafachronic acid biosynthesis pathway upregulates production of this steroid hormone. Together, we hypothesize that activation of the cognate transcription factors in these pathways commit the infectious larvae to reproductive growth and development. Green boxes denote proteins that stimulate growth and development, while red boxes denote proteins that stimulate dauer arrest

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cGMP signaling is modulated during iL3 activation

We hypothesized that during N. brasiliensis iL3 activation, host-like environmental cues would result in increased cGMP signaling, but that transcript abundance of pathway components would not change or would moderately increase in response to increased flux through this pathway. Interestingly, we observed a significant decrease in the abundance of Nbr-daf-11 and Nbr-tax-4 transcripts during iL3 activation with temperature (37 °C) or dafachronic acid (20 °C) in comparison to iL3 at 20 °C in the control treatment (Additional file 9: Figure S1). We also observed a trend towards a decrease in Nbr-tax-2 transcripts, but the fold-change was less than our cut-off of two for statistical significance.

IIS increases during iL3 activation

Since changes in IIS typically result from changes in ligand concentration rather than number of molecules in the signaling pathway itself, we hypothesized that iL3 activation in N. brasiliensis would be accompanied by an increase in transcripts encoding ILP agonists and a decrease in antagonists, while transcripts encoding signaling pathway components would be largely unchanged. To this end, we first identified the ILPs encoded by the N. brasiliensis genome through BLAST searches of both the genome and de novo assembled transcriptome. We found a total of eight ILPs (Fig. 4a), although others may be present but unidentified since transcriptomic data from other N. brasiliensis developmental stages are not available. Four of these peptides, Nbr-ILP-1 through -4, have β-type architecture, while three, Nbr-ILP-5 through -7, have γ-type architecture; we did not identify any peptides with α-type architecture. We also identified a single peptide, Nbr-ILP-8, with δ-type architecture, which has only been previously reported in the parasitic nematode S. stercoralis [39].

Fig. 4
figure 4

Insulin-like peptides are regulated by both temperature and dafachronic acid during N. brasiliensis iL3 activation. a Protein alignment of eight predicted N. brasiliensis insulin-like peptides (ILPs) with human insulin. Predicted signal peptides are highlighted in orange; conserved cysteine residues predicted to form disulfide bonds are in red letters and highlighted in yellow; a conserved glycine residue is highlighted in green; hydrophobic residues needed for helix formation are highlighted in blue; and predicted C-peptides are highlighted in gray with predicted cleavage sites underlined. Nbr-INS-1 through -4 have β type architecture; Nbr-INS-5 through -7 have γ type architecture; and Nbr-INS-8 has δ type architecture. b Transcript abundances were determined for the coding region of eight genes encoding insulin-like peptides, Nbr-ilp-1 through -8, in iL3 treated with either Δ7-dafachronic acid (DA) or the vehicle control (ethanol) for 24 h at 20 °C, 26 °C or 37 °C. TMM-normalized transcript abundance was plotted as the mean counts per million (CPM) for each condition; error bars represent the SEM. Statistical significance was evaluated between 20 °C vehicle and 20 °C DA conditions and also between 20 °C vehicle and 37 °C vehicle conditions; *, fold-change > 2.0, FDR-adjusted P-value < 0.05

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Based on phylogenetic analysis, the predicted peptide Nbr-ILP-1 is most similar to the C. elegans β-type INS-1, which acts as an antagonist [38, 51,52,53]; we therefore hypothesized that Nbr-ILP-1 also acts as an antagonist. To test this hypothesis, we examined the regulation of Nbr-ilp-1 transcript abundance during iL3 activation (Fig. 4b). We found a significant reduction in Nbr-ilp-1 transcripts in iL3 stimulated with dafachronic acid at 20 °C in comparison to the vehicle-treated control. Additionally, both Nbr-ILP-6 and Nbr-ILP-7 predicted peptides contain a PPG motif, which is present in the γ-type C. elegans antagonists Cel-INS-17 and Cel-INS-18 [38, 53, 54]. Based on their structure, we hypothesized that Nbr-ILP-6 and Nbr-ILP-7 would also be antagonists, with Nbr-ILP-6 more similar to Cel-INS-17 due to the absence of a C-peptide and Nbr-ILP-7 more similar to Cel-INS-18 due the presence of a C-peptide that is predicted to be cleaved. Therefore, we examined the regulation of Nbr-ilp-6 and -7 transcript abundance during iL3 activation (Fig. 4b). While temperature-dependent activation resulted in a significant decrease in Nbr-ilp-6 transcripts at 37 °C in comparison to the 20 °C control, changes in Nbr-ilp-7 transcript abundance were more equivocal. Although changes in transcript abundance during iL3 activation suggest that Nbr-ilp-4 and -8 (whose expression was downregulated) may also act as antagonists, and that Nbr-ilp-2, -3, and -5 (whose expression was upregulated) may act as agonists, we do not have an independent means of testing these hypotheses.

The majority of transcripts encoding the signaling molecules in the IIS pathway are not differentially regulated by activation via either temperature or dafachronic acid (Additional file 10: Figure S2). However, transcripts for Nbr-akt-1, Nbr-pitp-1, and Nbr-daf-16 each decreased significantly in both iL3 stimulated with dafachronic acid at 20 °C and temperature at 37 °C, in comparison to the 20 °C control. Conversely, Nbr-sgk-1 transcripts increased significantly in both iL3 stimulated with dafachronic at 20 °C and temperature at 37 °C, in comparison to the 20 °C control. Taken together, these data support the notion that the IIS pathway is present and switched on during iL3 activation.

Dauer TGFβ signaling decreases during iL3 activation

In C. elegans, daf-7, dbl-1, unc-129, and tig-2 all encode TGFβ ligands; however, only DAF-7, which signals through the DAF-1 and DAF-4 heterodimeric receptor, has a clear role in controlling dauer development [16]. To identify the N. brasiliensis homolog of daf-7, we utilized both protein alignment and phylogenetic analyses, which are summarized in Figure 5a. Since the dauer TGFβ signaling pathway ligand, DAF-7, promotes reproductive growth and development in C. elegans [55, 56], and Cel-daf-7 transcripts decrease during dauer arrest [56, 57], we hypothesized that transcripts of the N. brasiliensis homolog of daf-7 would increase in abundance during iL3 activation. Surprisingly, we found the opposite: Nbr-daf-7 transcripts decreased more than five-fold during iL3 activation at 37 °C in comparison to the 20 °C control and more than three-fold during activation with dafachronic acid at 20 °C in comparison to the 20 °C control (Fig. 5b).

Fig. 5
figure 5

Dauer TGFβ signaling is downregulated during N. brasiliensis iL3 activation. a Predicted protein alignment of the ligand domains of DAF-7-like TGFβ ligands from N. brasiliensis (Nbr-DAF-7), H. contortus (Hco-DAF-7), N. americanus (Nam-DAF-7), and C. elegans (Cel-DAF-7). Gray indicates similar amino acids. b Transcript abundance was determined for the coding region of Nbr-daf-7 in iL3 treated with either Δ7-dafachronic acid (DA) or the vehicle control (ethanol) for 24 h at 20 °C, 26 °C or 37 °C. TMM-normalized transcript abundance was plotted as the mean counts per million (CPM) for each condition; error bars represent the SEM. Statistical significance was evaluated between 20 °C vehicle and 20 °C DA conditions and also between 20 °C vehicle and 37 °C vehicle conditions; *, fold-change > 2.0, FDR-adjusted P-value < 0.05. c Heat map depicting differences in transcript abundance in iL3 treated with either Δ7-dafachronic acid (DA) or the ethanol vehicle control (Veh) for 24 h at 20 °C, 26 °C or 37 °C. Transcript abundance was z-scaled for each gene; biological replicates are indicated with a, b or c

Full size image

Similar to IIS, we hypothesized that transcripts encoding dauer TGFβ signaling components would be largely unchanged during iL3 activation. Most pathway components had only small changes in transcript abundance; however, the Co-Smad and Sno/Ski-like negative regulators encoded by Nbr-daf-3 and Nbr-daf-5, respectively, were significantly downregulated during iL3 activation (Fig. 5c). In iL3 activated at 37 °C, both Nbr-daf-3 and Nbr-daf-5 transcript abundances significantly decreased in comparison to the 20 °C control. For Nbr-daf-3, transcript abundance also decreased significantly with dafachronic acid activation at 20 °C in comparison to the 20 °C control, and although Nbr-daf-5 also decreased, the fold-change was less than our cut-off of two for statistical significance. Together, these data suggest the dauer TGFβ signaling pathway is present and that DAF-7 signaling is downregulated during iL3 activation.

A N. brasiliensis DAF9-like cytochrome P450 transcript increases during iL3 activation

In C. elegans, daf-9 encodes a cytochrome P450 enzyme that produces dafachronic acid [18], with daf-9 transcripts upregulated during growth and development as well as during dauer exit [58, 59]. Thus, we sought to identify which gene(s) may be responsible for production of dafachronic acid in N. brasiliensis. First, we utilized the N. brasiliensis draft genome and our de novo assembled RNA-Seq reads to identify transcripts predicted to encode cytochrome P450 enzymes. In total, we identified 44 transcripts that encode a predicted cytochrome P450 domain, which we classified by standard nomenclature by similarity to other characterized cytochrome P450s [45, 60]. Nbr-CYP22A1 was most similar phylogenetically to Cel-DAF-9 (Additional file 11: Figure S3).

Since increases in dafachronic acid biosynthesis in C. elegans result in upregulation of daf-9 transcripts via a DAF-12-mediated positive feedback loop [61], we reasoned that N. brasiliensis iL3 activation either by temperature or dafachronic acid would result in an increase in transcripts encoding the cytochrome P450(s) responsible for dafachronic acid production in the parasite. Using our RNA-Seq data, we identified a subset of N. brasiliensis cytochrome P450 transcripts that increase in abundance during iL3 activation, which includes Nbr-cyp22a1 (Fig. 6, Additional file 12: Data S8). To determine whether members of this group are capable of dafachronic acid production in vitro, we cloned Nbr-cyp-14a7, Nbr-cyp-22a1, Nbr-cyp-42a1, and Nbr-cyp-43a1 and attempted to express these in vitro, similar to previous studies in C. elegans [18]. However, we were unable to reliably express these N. brasiliensis cytochrome P450 proteins in HEK293 cells, similar to difficulties we have encountered with expressing S. stercoralis cytochrome P450 sequences (data not shown).

Fig. 6
figure 6

Dafachronic acid and temperature upregulate the abundance of a subset of N. brasiliensis cytochrome P450-encoding transcripts. Heat map depicting differences in transcript abundance of genes encoding cytochrome P450s in iL3 treated with either Δ7-dafachronic acid (DA) or the ethanol vehicle control (Veh) for 24 h at 20 °C, 26 °C or 37 °C. Transcript abundance was z-scaled for each gene and a dendrogram constructed to group genes by similarity of transcript regulation. Biological replicates are indicated with a, b or c

Full size image

We also examined differences in transcript abundance of other components of the proposed dafachronic acid biosynthetic pathway during N. brasiliensis iL3 activation (Additional file 13: Figure S4). We observed a significant increase in Nbr-daf-36 transcripts, predicted to encode a Rieske-like oxygenase, in iL3 activated at 37 °C in comparison to the 20 °C control, and we observed a significant increase in Nbr-dhs-16 transcripts, predicted to encode a short-chain dehydrogenase, in iL3 activated at 37 °C or with dafachronic acid at 20 °C, both in comparison to iL3 incubated at 20 °C. We also observed a significant decrease in Nbr-daf-12 transcripts at 37 °C in comparison to the 20 °C control. Altogether, these data support our hypothesis that dafachronic acid promotes iL3 activation in N. brasiliensis.

Discussion

Nematode parasitism of plants and animals is common and is thought to have arisen at least 15 times over the course of the phylum’s evolutionary history [50], suggesting that nematodes have specific developmental features that aid the transition to parasitism [62]. A longstanding hypothesis in the field, known as the “dauer hypothesis”, posits that the dauer stage of free-living nematodes aided the transition to parasitism [14]. While the genes that control dauer development are well understood in the free-living nematode C. elegans [15], the genes that control development of infectious larvae in parasitic nematodes are less clear, since IIS and DAF-12 signaling pathways appear to have similar functions, but TGFβ signaling appears to function differently [14]. In this study, we sought to characterize homologs of the four canonical dauer signaling pathways in N. brasiliensis and determine whether these pathways play a role in iL3 activation.

To further our understanding of how dafachronic acid regulates hookworm iL3 activation, we first investigated the DAF-12 nuclear hormone receptor. In this study, we cloned the N. brasiliensis gene encoding DAF-12 and demonstrated that it responds to both Δ4- and Δ7-dafachronic acid. Similar to other parasitic nematodes [23], Nbr-DAF-12 responds more strongly to Δ7-dafachronic acid than to Δ4-dafachronic acid, suggesting that Δ7-dafachronic acid may be the native ligand, or more similar to the native ligand(s), in the parasite. To determine how dafachronic acid regulates iL3 activation and compare this to temperature-mediated activation, we utilized RNA-Seq to examine changes in transcript abundance in the four canonical dauer signaling pathways using these two stimuli.

We were able to identify all major components in these four pathways and reconstruct transcripts for nearly all components in spite of the highly fragmented state of the N. brasiliensis genome. Most dauer signaling pathway genes found in C. elegans (clade 9A) were also present in N. brasiliensis (clade 9B) [2], with the exception of the number of ILPs, with 40 present in C. elegans [17] and eight identified in N. brasiliensis in this study. A paucity of ILPs in the ruminant parasitic nematode H. contortus (clade 9B) [49], as well as in the more distantly related human parasitic nematode S. stercoralis (clade 10B) [39], suggests that the number of ILPs have expanded in the Caenorhabditis lineage and are found in more modest numbers in parasitic nematodes. Conservation of the components in the other dauer signaling pathways is congruous with both N. brasiliensis and C. elegans having descended from a common ancestor in the clade V/clade 9 lineage [2, 50].

Although components of the cGMP signaling pathway are conserved in N. brasiliensis, the role they play during iL3 activation is less clear. While application of the exogenous cGMP analog 8-bromo-cGMP at 37 °C stimulates iL3 to resume feeding in A. caninum [20] as well as in the distantly related S. stercoralis [44], addition of 8-bromo-cGMP does not stimulate N. brasiliensis iL3 to begin feeding at 20 °C [12]. Since temperature alone is sufficient to induce feeding in N. brasiliensis iL3 [12], and feeding studies of either A. caninum or S. stercoralis using 8-bromo-cGMP at low temperatures have not been performed, it is difficult to determine whether there are differences in cGMP pathway activation between N. brasiliensis and other soil-transmitted helminths. Furthermore, we are unaware of a study directly examining changes in cGMP levels during iL3 activation in a parasitic nematode and whether this correlates with changes in transcript abundance in signaling pathway components. Thus, we are unable to fully ascertain the biological relevance of the decreases in transcript abundance of daf-11, tax-2, and tax-4 during iL3 activation in N. brasiliensis, although similar decreases have been observed in iL3 activation in H. contortus [49] and to a lesser extent in S. stercoralis [39] and T. canis [63]. Although specific homologs were not identified, receptor-gated ion channels are downregulated in A. ceylanicum during early infection of the golden hamster host [64].

Both pharmacological studies and our transcriptomic data support a role for increased IIS in hookworm iL3 activation. Inhibition of phosphatidylinositol 3-kinases blocks iL3 activation in hookworms [12, 22, 23] and S. stercoralis [65]. Based on our structural comparisons, we identified three ILP antagonists: Nbr-ILP-1, Nbr-ILP-6, and Nbr-ILP-7. Both Nbr-ilp-1 and Nbr-ilp-6 were downregulated during iL3 activation, similar to downregulation of putative ILP antagonists in H. contortus [46, 49] and S. stercoralis [39, 44] during iL3 activation. Our transcriptomic data also suggest that Nbr-ilp-2, Nbr-ilp-3, and Nbr-ilp-5 may act as agonists during iL3 activation. In future studies, determining whether upregulation of these putative IIS agonists is a key driver of iL3 activation in hookworms may be particularly informative in understanding mechanisms of pathogenesis. Together, these data support our hypothesis that increased IIS accompanies iL3 activation in both hookworms and other parasitic nematodes [66, 67], playing a similar role in larval growth and development as in C. elegans [17].

In C. elegans, daf-7 mutants have a dauer constitutive phenotype [55] and Cel-daf-7 expression is severely diminished in the dauer larva [56], suggesting that dauer TGFβ signaling is at a minimum in dauer larvae and increases upon activation. In direct contrast, transcripts for Nbr-daf-7, which are predicted to encode the dauer TGFβ ligand, are abundant in iL3 and suppressed by either dafachronic acid- or temperature-mediated activation. Downregulation of the DAF-7 TGFβ ligand suggests that dauer TGFβ signaling is suppressed during N. brasiliensis iL3 activation. Since similar observations have been made in a variety of clade IV/clade 10 and clade V/clade 9 parasitic nematodes [24, 39, 49, 57, 68], the upregulation of dauer TGFβ signaling during iL3 arrest and subsequent downregulation during iL3 activation may have been an important step for the evolution of nematode parasitism. While there appears to be only a single dauer TGFβ ligand in the clade V/clade 9 nematodes N. brasiliensis (this study), H. contortus [49], A. caninum [24], N. americanus [69], as well as C. elegans [56], there have been several duplications of the genes encoding these ligands in clade IV/clade 10 parasitic nematodes [39]. In future studies examining genetic changes accompanying the evolution of parasitism, it may be informative to investigate when these changes in dauer TGFβ signaling arose.

Since dafachronic acid activates the N. brasiliensis DAF-12 homolog, we sought to determine the enzyme(s) responsible for endogenous dafachronic acid production in N. brasiliensis by examining the regulation of each cytochrome P450-encoding transcript during iL3 activation with either temperature or Δ7-dafachronic acid. Since Cel-daf-9 is regulated by a positive feedback loop [61], we hypothesized that the cytochrome P450 responsible for dafachronic acid production in N. brasiliensis would be similarly upregulated by temperature and dafachronic acid. We identified several cytochrome P450-encoding transcripts, including a transcript encoding Nbr-CYP22A1 that phylogenetically groups with Cel-DAF-9, that are indeed upregulated during temperature- and dafachronic acid-mediated iL3 activation in N. brasiliensis. Although we cloned several of these transcripts, we were unable to determine which cytochrome P450 is responsible for dafachronic acid production in the parasite due to our inability to express these proteins in vitro. Similar studies in S. stercoralis have also been hampered by difficulties with parasite cytochrome P450 expression in HEK293 cells despite codon optimization; future studies to identify the DAF-9-like enzyme in parasitic nematodes may need to seek alternative strategies.

Since N. brasiliensis iL3 can be activated solely by host-like temperature, we sought to determine whether dafachronic acid can fully recapitulate temperature-dependent activation. Regardless of culture temperature, iL3 activated in 20 °C, 26 °C, and 37 °C dafachronic acid conditions broadly have similar transcript abundances for many of the dauer pathway genes as iL3 activated in the 37 °C vehicle control. These observations suggest that DAF-12-mediated signaling may include feed-back/feed-forward loops to ensure the full iL3 activation program is instituted in the presence of the ligand.

While genetic studies place DAF-12 downstream of IIS in C. elegans [15], the relationship between these two pathways in hookworms and other parasitic nematodes is less clear. In A. caninum, addition of Δ7-dafachronic acid fails to rescue inhibition of feeding by the IIS inhibitor LY294002 [23], and similar results have been observed in S. stercoralis [44]. These data, suggesting that DAF-12 signaling may regulate IIS, are bolstered by our observation that addition of dafachronic acid modulates ILP-encoding transcripts in N. brasiliensis. Similar regulation of ILP-encoding transcripts by dafachronic acid has also been observed in S. stercoralis [44]. Together, these observations point to a more complex relationship between the DAF-12 signaling and IIS pathways during the activation of iL3 in parasitic nematodes. Future studies examining the gene expression profile of iL3 activated inside a permissive host to iL3 activated in vitro with temperature and/or dafachronic acid at multiple time points may illuminate differences in gene expression between these modes of iL3 activation.

Conclusions

Together with studies in other parasitic nematodes, our data support that at least two of four canonical dauer pathways indeed regulate iL3 activation in hookworms. Since iL3 can undergo arrest inside the human host [70], an understanding of the genetic pathways controlling their activation may provide insight into development of future therapeutic strategies. As dafachronic acid can reduce worm burden in other species of parasitic nematodes [71], similar examination of dafachronic acid as a therapeutic agent in hookworm infections may be a fruitful area of future study.

Availability of data and materials

The datasets supporting the conclusions of this article are available in the NCBI repository under BioProject ID PRJNA574186.

Abbreviations

cGMP:

cyclic guanosine monophosphate

CPM:

counts per million reads mapped

GPCR:

G protein-coupled receptor

HA:

hemagglutinin

HEK:

human embryonic kidney

IGF-1:

insulin-like growth factor 1

IIS:

insulin/insulin growth factor 1 signaling

iL3:

infectious third-stage larvae

ILP:

insulin-like peptide

PCR:

polymerase chain reaction

RLU:

relative luciferase units

RPMI:

Roswell Park Memorial Institute

SEM:

standard error of the mean

TGFβ:

transforming growth factor beta

TMM:

trimmed mean of M

References

  1. Bethony J, Brooker S, Albonico M, Geiger SM, Loukas A, Diemert D, et al. Soil-transmitted helminth infections: ascariasis, trichuriasis, and hookworm. Lancet. 2006;367:1521–32.

    Article  PubMed  Google Scholar 

  2. van Megen H, van den Elsen S, Holterman M, Karssen G, Mooyman P, Bongers T, et al. A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology. 2009;11:927–50.

    Article  CAS  Google Scholar 

  3. Bouchery T, Filbey K, Shepherd A, Chandler J, Patel D, Schmidt A, et al. A novel blood-feeding detoxification pathway in Nippostrongylus brasiliensis L3 reveals a potential checkpoint for arresting hookworm development. PLoS Pathog. 2018;14:e1006931.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Anderson RC. Nematode parasites of vertebrates: their development and transmission. Wallingford: CABI; 2000. p. 676.

    Book  Google Scholar 

  5. Miller TA. Hookworm infection in man. Adv Parasitol. 1979;17:315–84.

    Article  CAS  PubMed  Google Scholar 

  6. Hawdon JM, Volk SW, Rose R, Pritchard DI, Behnke JM, Schad GA. Observations on the feeding behaviour of parasitic third-stage hookworm larvae. Parasitology. 1993;106:163–9.

    Article  PubMed  Google Scholar 

  7. Haas W, Haberl B, Syafruddin II, Kallert D, Stiegeler SKP. Behavioural strategies used by the hookworms Necator americanus and Ancylostoma duodenale to find, recognize and invade the human host. Parasitol Res. 2005;95:30–9.

    Article  PubMed  Google Scholar 

  8. Hawdon JM, Schad GA. Serum-stimulated feeding in vitro by third-stage infective larvae of the canine hookworm Ancylostoma caninum. J Parasitol. 1990;76:394–8.

    Article  CAS  PubMed  Google Scholar 

  9. Hawdon JM, Schad GA. Ancylostoma caninum: reduced glutathione stimulates feeding by third-stage infective larvae. Exp Parasitol. 1992;75:40–6.

    Article  CAS  PubMed  Google Scholar 

  10. Chauhan VM, Scurr DJ, Christie T, Telford G, Aylott JW, Pritchard DI. The physicochemical fingerprint of Necator americanus. PLoS Negl Trop Dis. 2017;11:e0005971.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Hawdon JM, Volk SW, Pritchard DI, Schad GA. Resumption of feeding in vitro by hookworm third-stage larvae: a comparative study. J Parasitol. 1992;78:1036–40.

    Article  CAS  PubMed  Google Scholar 

  12. Huang SC, Chan DTY, Smyth DJ, Ball G, Gounaris K, Selkirk ME. Activation of Nippostrongylus brasiliensis infective larvae is regulated by a pathway distinct from the hookworm Ancylostoma caninum. Int J Parasitol. 2010;40:1619–28.

    Article  CAS  PubMed  Google Scholar 

  13. Hotez P, Hawdon J, Schad GA. Hookworm larval infectivity, arrest and amphiparatenesis: the Caenorhabditis elegans Daf-c paradigm. Parasitol Today. 1993;9:23–6.

    Article  CAS  PubMed  Google Scholar 

  14. Crook M. The dauer hypothesis and the evolution of parasitism: 20 years on and still going strong. Int J Parasitol. 2014;44:1–8.

    Article  PubMed  Google Scholar 

  15. Hu PJ. Dauer. WormBook. 2007. https://doi.org/10.1895/wormbook.1.144.1.

    Article  PubMed  PubMed Central  Google Scholar 

  16. Gumienny TL, Savage-Dunn C. TGF-β signaling in C. elegans. WormBook. 2013. https://doi.org/10.1895/wormbook.1.22.2.

    Article  PubMed  PubMed Central  Google Scholar 

  17. Murphy CT, Hu PJ. Insulin/insulin-like growth factor signaling in C. elegans. WormBook. 2013. https://doi.org/10.1895/wormbook.1.164.1.

    Article  PubMed  PubMed Central  Google Scholar 

  18. Motola DL, Cummins CL, Rottiers V, Sharma KK, Li T, Li Y, et al. Identification of ligands for DAF-12 that govern dauer formation and reproduction in C. elegans. Cell. 2006;124:1209–23.

    Article  CAS  PubMed  Google Scholar 

  19. Antebi A. Nuclear receptor signal transduction in C. elegans. WormBook. 2015. https://doi.org/10.1895/wormbook.1.64.2.

    Article  PubMed  PubMed Central  Google Scholar 

  20. Hawdon JM, Datu B. The second messenger cyclic GMP mediates activation in Ancylostoma caninum infective larvae. Int J Parasitol. 2003;33:787–93.

    Article  CAS  PubMed  Google Scholar 

  21. Tissenbaum HA, Hawdon J, Perregaux M, Hotez P, Guarente L, Ruvkun G. A common muscarinic pathway for diapause recovery in the distantly related nematode species Caenorhabditis elegans and Ancylostoma caninum. Proc Natl Acad Sci USA. 2000;97:460–5.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Brand A, Hawdon JM. Phosphoinositide-3-OH-kinase inhibitor LY294002 prevents activation of Ancylostoma caninum and Ancylostoma ceylanicum third-stage infective larvae. Int J Parasitol. 2004;34:909–14.

    Article  CAS  PubMed  Google Scholar 

  23. Wang Z, Zhou XE, Motola DL, Gao X, Suino-Powell K, Conneely A, et al. Identification of the nuclear receptor DAF-12 as a therapeutic target in parasitic nematodes. Proc Natl Acad Sci USA. 2009;106:9138–43.

    Article  PubMed  PubMed Central  Google Scholar 

  24. Freitas TC, Arasu P. Cloning and characterisation of genes encoding two transforming growth factor-beta-like ligands from the hookworm, Ancylostoma caninum. Int J Parasitol. 2005;35:1477–87.

    Article  CAS  PubMed  Google Scholar 

  25. Camberis M, Gros GL, Urban J. Animal model of Nippostrongylus brasiliensis and Heligmosomoides polygyrus. Curr Protoc Immunol. 2003;55:19.12.1–12.27.

    Google Scholar 

  26. Giroux S, Corey EJ. Stereocontrolled synthesis of dafachronic acid A, the ligand for the DAF-12 nuclear receptor of Caenorhabditis elegans. J Am Chem Soc. 2007;129:9866–7.

    Article  CAS  PubMed  Google Scholar 

  27. Sharma KK, Wang Z, Motola DL, Cummins CL, Mangelsdorf DJ, Auchus RJ. Synthesis and activity of dafachronic acid ligands for the C. elegans DAF-12 nuclear hormone receptor. Mol Endocrinol. 2009;23:640–8.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Andrews S. FastQC: a quality control tool for high throughput sequence data. 2010. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Accessed 1 June 2017.

  29. Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Bushnell B, Rood J, Singer E. BBMerge—Accurate paired shotgun read merging via overlap. PLoS One. 2017;12:e0185056.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Pertea M, Kim D, Pertea GM, Leek JT, Salzberg SL. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nat Protoc. 2016;11:1650–67.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25:2078–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29:644–52.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013;8:1494–512.

    Article  CAS  PubMed  Google Scholar 

  35. Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Čech M, et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. Nucleic Acids Res. 2018;46:W537–44.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, Getz G, et al. Integrative genomics viewer. Nat Biotechnol. 2011;29:24–6.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. Thorvaldsdóttir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013;14:178–92.

    Article  CAS  PubMed  Google Scholar 

  38. Pierce SB, Costa M, Wisotzkey R, Devadhar S, Homburger SA, Buchman AR, et al. Regulation of DAF-2 receptor signaling by human insulin and ins-1, a member of the unusually large and diverse C. elegans insulin gene family. Genes Dev. 2001;15:672–86.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  39. Stoltzfus JD, Minot S, Berriman M, Nolan TJ, Lok JB. RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways. PLoS Negl Trop Dis. 2012;6:e1854.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Umesono K, Murakami KK, Thompson CC, Evans RM. Direct repeats as selective response elements for the thyroid hormone, retinoic acid, and vitamin D3 receptors. Cell. 1991;65:1255–66.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  41. Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–40.

    Article  CAS  PubMed  Google Scholar 

  42. Thomas JH, Birnby DA, Vowels JJ. Evidence for parallel processing of sensory information controlling dauer formation in Caenorhabditis elegans. Genetics. 1993;134:1105–17.

    CAS  PubMed  PubMed Central  Google Scholar 

  43. Antebi A, Yeh WH, Tait D, Hedgecock EM, Riddle DL. daf-12 encodes a nuclear receptor that regulates the dauer diapause and developmental age in C. elegans. Genes Dev. 2000;14:1512–27.

    CAS  PubMed  PubMed Central  Google Scholar 

  44. Stoltzfus JD, Bart SM, Lok JB. cGMP and NHR signaling co-regulate expression of insulin-like peptides and developmental activation of infective larvae in Strongyloides stercoralis. PLoS Pathog. 2014;10:e1004235.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  45. Albarqi MMY, Stoltzfus JD, Pilgrim AA, Nolan TJ, Wang Z, Kliewer SA, et al. Regulation of life cycle checkpoints and developmental activation of infective larvae in Strongyloides stercoralis by dafachronic acid. PLoS Pathog. 2016;12:e1005358.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  46. Ma G, Wang T, Korhonen PK, Young ND, Nie S, Ang C-S, et al. Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism. PLoS Pathog. 2019;15:e1007960.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  47. Zhi X, Zhou XE, Melcher K, Motola DL, Gelmedin V, Hawdon J, et al. Structural conservation of ligand binding reveals a bile acid-like signaling pathway in nematodes. J Biol Chem. 2012;287:4894–903.

    Article  CAS  PubMed  Google Scholar 

  48. Datu BJD, Loukas A, Cantacessi C, O’Donoghue P, Gasser RB. Investigation of the regulation of transcriptional changes in Ancylostoma caninum larvae following serum activation, with a focus on the insulin-like signalling pathway. Vet Parasitol. 2009;159:139–48.

    Article  CAS  PubMed  Google Scholar 

  49. Ma G, Wang T, Korhonen PK, Stroehlein AJ, Young ND, Gasser RB. Dauer signalling pathway model for Haemonchus contortus. Parasit Vectors. 2019;12:187.

    Article  PubMed  PubMed Central  Google Scholar 

  50. Blaxter M, Koutsovoulos G. The evolution of parasitism in Nematoda. Parasitology. 2015;142(Suppl. 1):26–39.

    Article  Google Scholar 

  51. Kodama E, Kuhara A, Mohri-Shiomi A, Kimura KD, Okumura M, Tomioka M, et al. Insulin-like signaling and the neural circuit for integrative behavior in C. elegans. Genes Dev. 2006;20:2955–60.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  52. Cornils A, Gloeck M, Chen Z, Zhang Y, Alcedo J. Specific insulin-like peptides encode sensory information to regulate distinct developmental processes. Development. 2011;138:1183–93.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  53. Hung WL, Wang Y, Chitturi J, Zhen M. A Caenorhabditis elegans developmental decision requires insulin signaling-mediated neuron-intestine communication. Development. 2014;141:1767–79.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  54. Kawano T, Ito Y, Ishiguro M, Takuwa K, Nakajima T, Kimura Y. Molecular cloning and characterization of a new insulin/IGF-like peptide of the nematode Caenorhabditis elegans. Biochem Biophys Res Commun. 2000;273:431–6.

    Article  CAS  PubMed  Google Scholar 

  55. Swanson MM, Riddle DL. Critical periods in the development of the Caenorhabditis elegans dauer larva. Dev Biol. 1981;84:27–40.

    Article  CAS  PubMed  Google Scholar 

  56. Ren P, Lim CS, Johnsen R, Albert PS, Pilgrim D, Riddle DL. Control of C. elegans larval development by neuronal expression of a TGF-beta homolog. Science. 1996;274:1389–91.

    Article  CAS  PubMed  Google Scholar 

  57. Crook M, Thompson FJ, Grant WN, Viney ME. daf-7 and the development of Strongyloides ratti and Parastrongyloides trichosuri. Mol Biochem Parasitol. 2005;139:213–23.

    Article  CAS  PubMed  Google Scholar 

  58. Wang J, Kim SK. Global analysis of dauer gene expression in Caenorhabditis elegans. Development. 2003;130:1621–34.

    Article  CAS  PubMed  Google Scholar 

  59. Gerisch B, Antebi A. Hormonal signals produced by DAF-9/cytochrome P450 regulate C. elegans dauer diapause in response to environmental cues. Development. 2004;131:1765–76.

    Article  CAS  PubMed  Google Scholar 

  60. Nelson DR, Zeldin DC, Hoffman SMG, Maltais LJ, Wain HM, Nebert DW. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Pharmacogenetics. 2004;14:1–18.

    Article  CAS  PubMed  Google Scholar 

  61. Schaedel ON, Gerisch B, Antebi A, Sternberg PW. Hormonal signal amplification mediates environmental conditions during development and controls an irreversible commitment to adulthood. PLoS Biol. 2012;10:e1001306.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  62. Stoltzfus JD, Pilgrim AA, Herbert DR. Perusal of parasitic nematode ’omics in the post-genomic era. Mol Biochem Parasitol. 2017;215:11–22.

    Article  CAS  PubMed  Google Scholar 

  63. Ma G, Wang T, Korhonen PK, Nie S, Reid GE, Stroehlein AJ, et al. Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host. Parasit Vectors. 2019;12:32.

    Article  PubMed  PubMed Central  Google Scholar 

  64. Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV. The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. Nat Genet. 2015;47:416–22.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  65. Stoltzfus JD, Massey HC, Nolan TJ, Griffith SD, Lok JB. Strongyloides stercoralis age-1: a potential regulator of infective larval development in a parasitic nematode. PLoS One. 2012;7:e38587.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  66. Castelletto ML, Massey HC, Lok JB. Morphogenesis of Strongyloides stercoralis infective larvae requires the DAF-16 ortholog FKTF-1. PLoS Pathog. 2009;5:e1000370.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  67. Gao X, Wang Z, Martin J, Abubucker S, Zhang X, Mitreva M, et al. Identification of hookworm DAF-16/FOXO response elements and direct gene targets. PLoS One. 2010;5:e12289.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  68. Massey HC, Castelletto ML, Bhopale VM, Schad GA, Lok JB. Sst-tgh-1 from Strongyloides stercoralis encodes a proposed ortholog of daf-7 in Caenorhabditis elegans. Mol Biochem Parasitol. 2005;142:116–20.

    Article  CAS  PubMed  Google Scholar 

  69. Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, et al. Genome of the human hookworm Necator americanus. Nat Genet. 2014;46:261–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  70. Schad GA, Chowdhury AB, Dean CG, Kochar VK, Nawalinski TA, Thomas J, et al. Arrested development in human hookworm infections: an adaptation to a seasonally unfavorable external environment. Science. 1973;180:502–4.

    Article  CAS  PubMed  Google Scholar 

  71. Patton JB, Bonne-Année S, Deckman J, Hess JA, Torigian A, Nolan TJ, et al. Methylprednisolone acetate induces, and Δ7-dafachronic acid suppresses, Strongyloides stercoralis hyperinfection in NSG mice. Proc Natl Acad Sci USA. 2018;115:204–9.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

The dafachronic acid was a gift from E. J. Corey (Harvard University). The N. brasiliensis strain was kindly provided by Richard M. Locksley (University of California, San Francisco). A special thanks to Mohammed Kanchwala and Chao Xing (UT Southwestern) for RNA-Seq library preparation and sequencing and for help with de novo assembly. We also thank Brady Aukema, Raiyu Ayanto, David Brown, Zhangyuan Chen, Alexander DePaulis, Bryn Johnson, Summer Santoro, and Morgan Wagner (Millersville University) for assistance with cloning N. brasiliensis cytochrome P450 homologs. We additionally thank Kristina B. Lewis and James B. Lok (University of Pennsylvania) for careful reading of the manuscript and Damia Gonzalez Akimori (Millersville University) for assistance with illustrations.

Funding

This study was supported by the National Institutes of Health (Grant R33 AI105856 to SAK and DJM), the Robert A. Welch Foundation (Grants I-1558 to SAK and I-1275 to DJM), and the Howard Hughes Medical Institute (DJM). JDCS was supported by a Faculty Research grant (Millersville University) and a Pennsylvania State System of Higher Education Faculty Professional Development Council grant. FC was supported by a MU-MUSE fellowship (Millersville University).

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Authors and Affiliations

  1. Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA

    Katherine Omueti Ayoade, Woong Hee Cho, Zhu Wang, Steven A. Kliewer & David J. Mangelsdorf

  2. Department of Dermatology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA

    Katherine Omueti Ayoade

  3. Department of Biology, Millersville University of Pennsylvania, Millersville, PA, 17551, USA

    Faith R. Carranza & Jonathan D. C. Stoltzfus

  4. Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA

    Steven A. Kliewer

  5. Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, USA

    David J. Mangelsdorf

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  1. Katherine Omueti Ayoade
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Contributions

KOA, SAK, DJM, and JDCS conceived and designed the experiments. JDCS, KOA, FC, WHC, and ZW performed the experiments and analyzed the data. JDCS wrote the manuscript. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Jonathan D. C. Stoltzfus.

Ethics declarations

Ethics approval and consent to participate

Nippostrongylus brasiliensis was maintained in Sprague-Dawley rats in accordance with IACUC-approved animal protocol # 2016-101580 at UT Southwestern.

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The authors declare that they have no competing interests.

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Supplementary information

Additional file 1: Data S1.

Nippostrongylus brasiliensis dauer homolog transcript coding sequences.

Additional file 2: Data S2.

Nippostrongylus brasiliensis dauer homolog genome annotations.

Additional file 3: Data S3.

Nippostrongylus brasiliensis dauer homolog predicted protein sequences.

Additional file 4: Data S4.

Primer sequences.

Additional file 5: Data S5.

Nippostrongylus brasiliensis StringTie-predicted transcript genome annotations.

Additional file 6: Data S6.

Nippostrongylus brasiliensis StringTie-predicted EdgeR-normalized transcript counts.

Additional file 7: Data S7.

Nippostrongylus brasiliensis EdgeR differentially expressed transcripts.

Additional file 8: Table S1.

Dafachronic acid stimulates resumption of feeding in N. brasiliensis iL3 at non-permissive temperatures.

Additional file 9: Figure S1.

Regulation of transcripts encoding cGMP signaling pathway components during N. brasiliensis iL3 activation.

Additional file 10: Figure S2.

Regulation of transcripts encoding IIS pathway components during N. brasiliensis iL3 activation.

Additional file 11: Figure S3.

Nbr-CYP-22A1 groups with Cel-DAF-9 by phylogenetic analysis.

Additional file 12: Data S8.

Nippostrongylus brasiliensis cytochrome P450-encoding transcript abundance profiles.

Additional file 13: Figure S4.

Regulation of transcripts encoding components of a proposed dafachronic acid biosynthetic pathway during N. brasiliensis iL3 activation.

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Ayoade, K.O., Carranza, F.R., Cho, W.H. et al. Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation. Parasites Vectors 13, 162 (2020). https://doi.org/10.1186/s13071-020-04035-z

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Keywords

Parasites & Vectors

ISSN: 1756-3305

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