Figures
In Fig 4 the diploid and haploid bars are swapped. The x-axis labels are correct but the bar previously displayed for ‘diploid’ should appear above ‘haploid’ and vice versa. The authors have provided a corrected Fig 4 here.
(A) Example of selected clusters overlapping with the triple reporter on chromosome 2 found in WT Can1-Red diploid or haploid gamma-exposed yeast. Symbols include: “red spheres” = mutated C’s, “green spheres” = mutated G’s. Each numbered line (1–16) shows a unique cluster. Information about these clusters and their derivative strains can be found in S2G Table and S1 Data. Four cluster types are illustrated: (I) C-coordinated or G-coordinated clusters, comprised exclusively of either mutated C’s or mutated G’s on the top strand; (II) C-coordinated clusters adjacent to a single G. The terminal G in these clusters may have originated from the same mutagenic event that formed the C-coordinated portion of the cluster or it could be an unlinked random, scattered mutation. Since we could not distinguish between these two possibilities, they are represented here as a separate class. G-coordinated clusters adjacent to a single C were also detected (not illustrated); (III) CG single-switch clusters include clusters that have a single switch in coordination of C to G in the top strand in a 5′ to 3′ direction (called 5′ C to G single-switch) or have a switch from G to C in a 5′ to 3′ direction (called 5′ G to C single-switch) (not illustrated); (IV) CG multiple-switch clusters having alternating mutated C’s and G’s in the top strand. A portion of cluster number 13 is magnified to illustrate the finer detail of CG switching. Yellow triangle in magnified portion shows corresponding position in unmagnified view. A complete list of cluster categories reflecting strand assignment of mutations is provided in Materials and Methods. (B) The distribution of selected and nonselected gamma-induced cluster types formed from >3 C and/or G mutations in a cluster identified in the following colony types: (i) diploid = selected and nonselected clusters from all WT diploid isolates (Can1-Red and non-Can1-Red isolates); (ii) haploid = selected and nonselected clusters from Can1-Red WT haploid isolates; (iii) Can1-Red all = selected and nonselected clusters from Can1-Red isolates; (iv) Can1-Red (nonselected) = only nonselected clusters from Can1-Red isolates; and (v) non-Can1-Red = clusters from all non-Can1-Red isolates including Can1-White, small NR (not rearranged), small R (rearranged), and large colonies. The four classes of clusters shown are detailed in (A) and include (i) C-coord, G-coord: C- or G-coordinated clusters; (ii) C-coordinated_G, G-coordinated_C: C-coordinated clusters adjacent to a single G or G-coordinated clusters adjacent to a single C, respectively; (iii) CG single-switch; and (iv) CG multiple-switch. Source data in S2H Table. (See also S1, S2 and S3 Tables, S3 Fig). CG, C- and/or G-containing; WT, wild type.
Reference
- 1. Sakofsky CJ, Saini N, Klimczak LJ, Chan K, Malc EP, Mieczkowski PA, et al. (2019) Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation. PLoS Biol 17(9): e3000464. https://doi.org/10.1371/journal.pbio.3000464 pmid:31568516
Citation: Sakofsky CJ, Saini N, Klimczak LJ, Chan K, Malc EP, Mieczkowski PA, et al. (2020) Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation. PLoS Biol 18(3): e3000695. https://doi.org/10.1371/journal.pbio.3000695
Published: March 6, 2020
Copyright: © 2020 Sakofsky et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.