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Automated Platform for Rapid and Reproducible Sample Preparations in Point-of-Care(POC) Molecular Diagnostics

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Abstract

Fully automated system for sample preparation in molecular diagnostics was developed. The small cartridge with multiple chambers and a rotating valve was designed for automated processes such as extraction, separation and purifications during the DNA sample preparation. The automated processes such as injection, mixing, capturing and valve on/off motions were controlled by an affordable, motorized control system. We demonstrated the automated DNA extraction of pathogenic bacteria using this system. The deviations in the purity and real-time polymerase chain reaction (PCR) detection of the automated DNA extraction samples were clearly decreased. The device provided rapid, reliable, and reproducible sample preparation in comparison with manual DNA extraction. This automated platform can be utilized in emergent point-of-care testing of infectious disease and foodborne bacteria.

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References

  1. O'Connor, L. & Glynn, B. Recent advances in the development of nucleic acid diagnostics. Expert Rev. Med. Devices 7, 529–539 (2010).

    Article  CAS  Google Scholar 

  2. Gubala, V., Harris, L.F., Ricco, A.J., Tan, M.X. & Williams, D.E. Point-of-care diagnostics: status and future. Anal. Chem. 84, 487–515 (2012).

    Article  CAS  Google Scholar 

  3. Chin, C. D., Linder, V. & Sia, S.K Commercialization of microfluidic point-of-care diagnostic devices. Lab Chip 12, 2118–2134 (2012).

    Article  CAS  Google Scholar 

  4. Berry, S. M., Alarid, E. T. & Beebe, D. J. One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST). Lab Chip 11, 1747–1753 (2011).

    Article  CAS  Google Scholar 

  5. Byrnes, S., Fan, A., Trueb, J., Jareczek, F., Mazzo-chette, M., Sharon, A., Sauer-Budge, A.F. & Klap-perich, C. M. A portable, pressure driven, room temperature nucleic acid extraction and storage system for point-of-care molecular diagnostics. Anal. Methods 5, 3177–3184 (2013).

    Article  CAS  Google Scholar 

  6. Vandeventer, P.E., Weigel, K.M., Salazar, J., Erwin, B., Irvine, B., Doebler, R., Nadim, A., Cangelosi, G. A. & Niemz, A. Mechanical Disruption of Lysis-Resistant Bacteria using a Miniature, Low Power, Disposable Device. J. Clin. Microbiol. 49, 2533–2539(2011).

    Article  Google Scholar 

  7. Hukari, K.W., Shultz, M., Isely, N., Milson, R. & West, J.A. A completely automated sample preparation instrument and consumable device for isolation and purification of nucleic acids. J. Lab. Autom. 16, 355–365(2011).

    Article  CAS  Google Scholar 

  8. Suzuki, S. I., Komori, M., Hirai, M., Ureshino, N. & Kimura, S. Development of a Novel, Fully-Automated Genotyping System: Principle and Applications. Sensors 12, 16614–16627 (2012).

    Article  CAS  Google Scholar 

  9. Greub, G., Sahlil, R., Brouillet R. & Jaton, K. Ten years of R&D and full automation in molecular diagnosis. Future Microbiol. 11, 403–425 (2016).

    Article  CAS  Google Scholar 

  10. Chan, K., Coen, M., Hardick, J., Gaydos, C.A., Wong, K.Y., Smith, C., Wilson, S.A., Vayugundla, S.P. & Wong, S. Low-cost 3D printers enable high-quality and automated sample preparation and molecular detection. PLoSone 11, e0158502 (2016).

    Article  Google Scholar 

  11. Loens, K., Bergs, K., Ursi, D., Goossens, H. & Ie-ven, M. Evaluation of NucliSens easyMAG for Automated Nucleic Acid Extraction from Various Clinical Specimens. J. Clin. Microbiol. 45, 421–425 (2007).

    Article  CAS  Google Scholar 

  12. Dundas, N., Leos, N.K., Mitui, M., Revell, P. & Rogers, B.B. Comparison of automated nucleic acid extraction methods with manual extraction. J. Mol. Diagn. 10, 311–316(2008).

    Article  Google Scholar 

  13. Riemann, K., Adamzik, M., Frauenrath, S., Egen-sperger, R., Schmid, K.W., Brockmeyer, N.H. & Siffert, W. Comparison of manual and automated nucleic acid extraction from whole-blood samples. J. Clin. Lab. Anal. 21, 244–248 (2007).

    Article  CAS  Google Scholar 

  14. Kwon, O., Yoon, J., Jeong, K., Lee, D., Lee, K. & Kwak, B. Development of a Self-contained Sample Preparation Cartridge for Automated PCR Testing. BioChipJ. 9, 300–305 (2015).

    Article  CAS  Google Scholar 

  15. Kwon, O., Lee, K., Kwak, B., Yoon, J., Jeong, K. & Lee, D. Fully automated molecular diagnosis by a novel cartridge-based platform Lnt. J. Precis. Eng. Manuf. 17, 597–601 (2016).

    Article  Google Scholar 

  16. Francesconi, A., Kasai, M., Harrington, S.M., Beveridge, M.G, Petraitiene, R., Petraitis, V., Schaufele, R.L. & Walsh, T.J. Automated and manual methods of DNA extraction for Aspergillus fumigatus and Rhizopus oryzae analyzed by quantitative real-time PCR. J. Clin. Microbiol. 46, 1978–1984 (2008).

    Article  CAS  Google Scholar 

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Acknowledgements

This work partially supported by SC1290 & NK217F projects of Korea Institute of Machinery and Materials under the auspices of the Ministry of Science, ICT, and Future Planning, Korea. In addition, this work partially supported by by National Research Foundation of Korea (NRF 2016R1C1B2011729).

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Correspondence to Ohwon Kwon.

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Lee, D., Kwon, O., Lee, KH. et al. Automated Platform for Rapid and Reproducible Sample Preparations in Point-of-Care(POC) Molecular Diagnostics. BioChip J 13, 288–293 (2019). https://doi.org/10.1007/s13206-019-3304-6

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  • DOI: https://doi.org/10.1007/s13206-019-3304-6

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