Explicit effect of stochastic reaction delay on gene expression

Huahai Qiu, Bengong Zhang, and Tianshou Zhou
Phys. Rev. E 101, 012405 – Published 9 January 2020

Abstract

Apart from intrinsic stochastic variability, gene expression also involves stochastic reaction delay arising from heterogeneity and fluctuation processes, which can affect the efficiency of reactants (e.g., mRNA or protein) in exploring their environments. In contrast to the former that has been extensively investigated, the impact of the latter on gene expression remains not fully understood. Here, we analyze a non-Markovian model of bursty gene expression with general delay distribution. We analytically find that the effect of stochastic reaction delay is equivalent to the introduction of negative feedback, and stationary protein distribution only depends on the mean of the delay and is independent of its distribution. We numerically show that the stochastic reaction delay always slightly amplifies the mean protein level but remarkably reduces the protein noise (quantified by the ratio of the variance over the squared average). Our analysis indicates that stochastic reaction delay is an important factor affecting gene expression.

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  • Received 29 September 2019
  • Revised 20 December 2019

DOI:https://doi.org/10.1103/PhysRevE.101.012405

©2020 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living SystemsStatistical Physics & Thermodynamics

Authors & Affiliations

Huahai Qiu1, Bengong Zhang1, and Tianshou Zhou1,2

  • 1School of Mathematics and Computers, Wuhan Textile University, Wuhan 430200, People's Republic of China
  • 2Key Laboratory of Computational Mathematics, School of Mathematics, Sun Yat-sen University, Guangdong Province, Guangzhou 510275, People's Republic of China

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Vol. 101, Iss. 1 — January 2020

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