Abstract
Introduction
Pulmonary sarcomatoid carcinoma (PSC) is a group of rare tumors with the presence of both cancerous and sarcoma components in tumor. In this study, we explore their cancer genomic background and the relationship with clinical prognosis.
Materials and methods
A cohort of 32 PSC patients were retrospectively collected from the First People’s Hospital of Changzhou between 2005 and 2016. Targeted next-generation sequencing (NGS) of 416 cancer-relevant genes was performed on 32 PSC tumors.
Results
EGFR (28%), KRAS (22%), and MET (16%) are the most commonly mutated oncogenes, while the top mutated tumor suppressor genes are TP53 (69%) and RB1 (25%). The majority of EGFR mutations are rare mutations, some of which have not been reported before. Moreover, 4 out of 6 MET alterations are exon 14 skipping, far more frequent than in NSCLC. Interestingly, ARID1A was found to be co-mutated with TP53 at all times. The tumor mutation burden (TMB) is ranging from 3.3 to 52.2 per megabase (MB) with a median of 11.7 per MB and 13 patients have more than 20 mutations per MB. Patients mutated in BRCA2, KMT2B, SMARCA4 or TSC2 have significantly higher TMB compared to patients with wide-type genes.
Conclusion
Our study characterizes the genetic background of Chinese PSC patients and demonstrates the importance of involving EGFR rare mutations and MET exon 14 skipping targeted therapies into clinical trials for treating PSC patients. High TMB are seen in about 40.6% Chinese patients with PSC, which could benefit from immune checkpoint inhibitors.
Similar content being viewed by others
References
Yendamuri S, Caty L, Pine M et al (2012) Outcomes of sarcomatoid carcinoma of the lung: a surveillance, epidemiology, and end results database analysis. Surgery 152(3):397–402
Ettinger DS, Wood DE, Akerley W et al (2015) Non-small cell lung cancer, version 6.2015. J Natl Compr Cancer Netw 13(5):515–524
Travis WD (2010) Sarcomatoid neoplasms of the lung and pleura. Arch Pathol Lab Med 134(11):1645–1658
Vieira T, Girard N, Ung M et al (2013) Efficacy of first-line chemotherapy in patients with advanced lung sarcomatoid carcinoma. J Thorac Oncol 8(12):1574–1577
Chang YL, Wu CT, Shih JY et al (2011) EGFR and p53 status of pulmonary pleomorphic carcinoma: implications for EGFR tyrosine kinase inhibitors therapy of an aggressive lung malignancy. Ann Surg Oncol 18(10):2952–2960
Terra SB, Jang JS, Bi L et al (2016) Molecular characterization of pulmonary sarcomatoid carcinoma: analysis of 33 cases. Mod Pathol 29(8):824–831
Liu X, Jia Y, Stoopler MB et al (2016) Next-generation sequencing of pulmonary sarcomatoid carcinoma reveals high frequency of actionable MET gene mutations. J Clin Oncol 34(8):794–802
Kaira K, Horie Y, Ayabe E et al (2010) Pulmonary pleomorphic carcinoma: a clinicopathological study including EGFR mutation analysis. J Thorac Oncol 5(4):460–465
Ahn MJ, Park BB, Ahn JS et al (2008) Are there any ethnic differences in molecular predictors of erlotinib efficacy in advanced non-small cell lung cancer? Clin Cancer Res 14(12):3860–3866
Schrock AB, Li SD, Frampton GM et al (2017) Pulmonary sarcomatoid carcinomas commonly harbor either potentially targetable genomic alterations or high tumor mutational burden as observed by comprehensive genomic profiling. J Thorac Oncol 12:932–942
Sharma SV, Bell DW, Settleman J et al (2007) Epidermal growth factor receptor mutations in lung cancer. Nat Rev Cancer 7(3):169–181
Wang S, Wang Z (2014) EGFR mutations in patients with non-small cell lung cancer from mainland China and their relationships with clinicopathological features: a meta-analysis. Int J Clin Exp Med 7(8):1967–1978
Klughammer B, Brugger W, Cappuzzo F et al (2016) Examining treatment outcomes with erlotinib in patients with advanced non-small cell lung cancer whose tumors harbor uncommon EGFR mutations. J Thorac Oncol 11(4):545–555
Cho J, Bass AJ, Lawrence MS et al (2014) Colon cancer-derived oncogenic EGFR G724S mutant identified by whole genome sequence analysis is dependent on asymmetric dimerization and sensitive to cetuximab. Mol Cancer 13:141
Kancha RK, Peschel C, Duyster J (2011) The epidermal growth factor receptor-L861Q mutation increases kinase activity without leading to enhanced sensitivity toward epidermal growth factor receptor kinase inhibitors. J Thorac Oncol 6(2):387–392
Awad MM, Oxnard GR, Jackman DM et al (2016) MET Exon 14 mutations in non-small-cell lung cancer are associated with advanced age and stage-dependent MET genomic amplification and c-Met overexpression. J Clin Oncol 34(7):721–730
Allo G, Bernardini MQ, Wu RC et al (2014) ARID1A loss correlates with mismatch repair deficiency and intact p53 expression in high-grade endometrial carcinomas. Mod Pathol 27(2):255–261
Guan B, Wang TL, Shih MI (2011) ARID1A, a factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers. Can Res 71(21):6718–6727
Fadare O, Gwin K, Desouki MM et al (2013) The clinicopathologic significance of p53 and BAF-250a (ARID1A) expression in clear cell carcinoma of the endometrium. Mod Pathol 26(8):1101–1110
Rizvi NA, Hellmann MD, Snyder A et al (2015) Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348(6230):124–128
Chan TA, Wolchok JD, Snyder A (2015) Genetic basis for clinical response to CTLA-4 blockade in Melanoma. N Engl J Med 373(20):1984
Rosenberg JE, Hoffman-Censits J, Powles T et al (2016) Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial. Lancet 387(10031):1909–1920
Lawrence MS, Stojanov P, Polak P et al (2013) Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499(7457):214–218
Chalmers ZR, Connelly CF, Fabrizio D et al (2017) Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden. Genome medicine 9(1):34
Budczies J, Bockmayr M, Denkert C et al (2015) Classical pathology and mutational load of breast cancer—integration of two worlds. J Pathol Clin Res 1(4):225–238
Soo RA, Lim SM, Syn NL et al (2018) Immune checkpoint inhibitors in epidermal growth factor receptor mutant non-small cell lung cancer: current controversies and future directions. Lung Cancer 115:12–20
Acknowledgements
The research was funded by grant from the International Science and Technology Cooperation Project of Changzhou Science and Technology bureau (number CZ20140016).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
About this article
Cite this article
Liang, X., Li, Q., Xu, B. et al. Mutation landscape and tumor mutation burden analysis of Chinese patients with pulmonary sarcomatoid carcinomas. Int J Clin Oncol 24, 1061–1068 (2019). https://doi.org/10.1007/s10147-019-01454-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10147-019-01454-6