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Resonance assignments of bacteriophage T4 Y04L protein

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Abstract

Phage study draws more attention recently as the bacterial antibiotic resistances become a major threat for global health. Bacteriophage T4 is one of the most studied the phages and the representative of Tevenvirinae subfamily. Since 1950s, T4 phage has been studied more intensively than any other large lytic phages and its biological studies have provided basis for current phage biology as well as other applications. However, among approximately 300 T4 genes, 130 of them still remain uncharacterized. Coded by y04L gene in pin-nrdC intergenic region, Y04L is an example of such proteins whose biological function and mechanism are yet to be addressed. While Pin blocks bacterial Lon protease and thus inhibits bacterial toxin–antitoxin system, NrdC or Glutaredoxin is a specific reducing agent for the phage-induced ribonucleotide reductase. With two interesting neighbouring genes, this 11.9 kDa protein may be functionally related to Pin or NrdC. Here, using solution-state NMR, our near-complete resonance assignment of Y04L provides a basis for future structure determination and further mechanism study.

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References

  • Comeau AM, Bertrand C, Letarov A, Tétart F, Krisch HM (2007) Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362:384–396

    Article  Google Scholar 

  • Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax AJJobN (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293

    Article  Google Scholar 

  • Dupuis M-È, Villion M, Magadán AH, Moineau S (2013) CRISPR-Cas and restriction-modification systems are compatible and increase phage resistance. Nat Commun 4:2087

    Article  ADS  Google Scholar 

  • Ebrahimizadeh W, Rajabibazl M (2014) Bacteriophage vehicles for phage display: biology, mechanism, and application. Curr Microbiol 69:109–120

    Article  Google Scholar 

  • Gamkrelidze M, Dabrowska K (2014) T4 bacteriophage as a phage display platform. Arch Microbiol 196:473–479. https://doi.org/10.1007/s00203-014-0989-8

    Article  Google Scholar 

  • Goldfarb T et al (2015) BREX is a novel phage resistance system widespread in microbial genomes. EMBO J 34:169–183

    Article  Google Scholar 

  • Hadas H, Einav M, Fishov I, Zaritsky A (1997) Bacteriophage T4 development depends on the physiology of its host Escherichia coli. Microbiology 143:179–185

    Article  Google Scholar 

  • Johnson BA, Blevins RA (1994) NMR View: a computer program for the visualization and analysis of NMR data. J Biomol NMR 4:603–614

    Article  Google Scholar 

  • Kutter E, Bryan D, Ray G, Brewster E, Blasdel B, Guttman B (2018) From host to phage metabolism: hot tales of phage T4's takeover of E. coli viruses. 10. https://doi.org/10.3390/v10070387

    Article  Google Scholar 

  • Lin DM, Koskella B, Lin HC (2017) Phage therapy: an alternative to antibiotics in the age of multi-drug resistance. World J Gastrointest Pharmacol Ther 8:162–173. https://doi.org/10.4292/wjgpt.v8.i3.162

    Article  Google Scholar 

  • Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W (2003) Bacteriophage T4 genome. Microbiol Mol Biol Rev 67:86–156. https://doi.org/10.1128/mmbr.67.1.86-156.2003

    Article  Google Scholar 

  • Nikkola M, Gleason FK, Eklund H (1993) Reduction of mutant phage T4 glutaredoxins by Escherichia coli thioredoxin reductase. J Biol Chem 268:3845–3849

    Google Scholar 

  • Onodera K (2009) Molecular biology and biotechnology of bacteriophage. In: Nano/micro biotechnology. Springer, Berlin, pp 17–43

    Chapter  Google Scholar 

  • Shen Y, Delaglio F, Cornilescu G, Bax A (2009) TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR 44:213–223

    Article  Google Scholar 

  • Sorek R, Kunin V, Hugenholtz P (2008) CRISPR—a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 6:181

    Article  Google Scholar 

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Correspondence to Bing Liu.

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Zhang, K., Wang, Z., Chang, G. et al. Resonance assignments of bacteriophage T4 Y04L protein. Biomol NMR Assign 14, 51–54 (2020). https://doi.org/10.1007/s12104-019-09919-5

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