Skip to main content

Advertisement

Log in

Advances in Cryo-Correlative Light and Electron Microscopy: Applications for Studying Molecular and Cellular Events

  • Published:
The Protein Journal Aims and scope Submit manuscript

Abstract

Cryo-correlative light and electron microscopy (Cryo-CLEM) is materializing as a widespread approach amalgamating the advantages of both fluorescence light microscopy (FLM) as well as three dimensional (3D) cryo-electron tomography (cryo-ET) to reveal the ultrastructure of significant target molecules with specific cellular functions. Cryo-CLEM allows imaging of cells by means of fluorescence microscopy exhibiting the location of the destined molecule at high temporal and spatial resolution while cryo-ET is employed to analyze the 3D structure at a molecular resolution in close-to-physiological condition. Present review focuses upon the practical strategies for Cryo-CLEM and recent technical developments that will assist the broad implementation of this technique to investigate and answer questions pertaining to various biological events occurring in the cell.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

Abbreviations

CLEM:

Correlative light and electron microscopy

EM:

Electron microscopy

ET:

Electron tomography

FM:

Fluorescence microscopy

FLM:

Fluorescence light microscopy

3D:

3-Dimensional

HIV:

Human immunodeficiency virus

AIDS:

Acquired immuno deficiency syndrome

References

  1. Jun S, Ke D, Debiec K, Zhao G, Meng X, Ambrose Z, Gibson GA, Watkins SC, Zhang P (2011) Direct visualization of hiv-1 with correlative live-cell microscopy and cryo-electron tomography. Structure 19:1573–1581

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Schorb M, Briggs JAG (2014) Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity. Ultramicroscopy 143:24–32

    Article  CAS  PubMed  Google Scholar 

  3. He Y, Jensen GJ, Bjorkman PJ (2009) Cryo-electron tomography of homophilic adhesion mediated by the neural cell adhesion molecule l1. Structure 17:460–471

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Leis A, Rockel B, Andrees L, Baumeister W (2009) Visualizing cells at the nanoscale. Trends Biochem Sci 34:60–70

    Article  CAS  PubMed  Google Scholar 

  5. Chung JM, Jung HS (2018) Cryo-electron tomography: a tool for in situ structural analysis of macromolecular complexes. Appl Spectrosc Rev 53:195–202

    Article  Google Scholar 

  6. Jun S, Choi KJ, Kim MJ, Kweon H-S (2012) Significant strategies for the successful performance of cryo-electron tomography. Anal Sci Technol 3:203–209

    Article  CAS  Google Scholar 

  7. Dunstone MA, de Marco A (2017) Cryo-electron tomography: an ideal method to study membrane-associated proteins. Philos Trans R Soc Lond B 372:20160210

    Article  CAS  Google Scholar 

  8. Elad N, Abramovitch S, Sabanay H, Medalia O (2011) Microtubule organization in the final stages of cytokinesis as revealed by cryo-electron tomography. J Cell Sci 124:207

    Article  CAS  PubMed  Google Scholar 

  9. Kukulski W, Schorb M, Welsch S, Picco A, Kaksonen M, Briggs JAG (2011) Correlated fluorescence and 3d electron microscopy with high sensitivity and spatial precision. J Cell Biol 192:111

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Zhang P (2013) Correlative cryo-electron tomography and optical microscopy of cells. Curr Opin Struct Biol 23:763–770

    Article  CAS  PubMed  Google Scholar 

  11. de Boer P, Hoogenboom JP, Giepmans BNG (2015) Correlated light and electron microscopy: ultrastructure lights up! Nat Methods 12:503

    Article  PubMed  CAS  Google Scholar 

  12. Plitzko JM, Rigort A, Leis A (2009) Correlative cryo-light microscopy and cryo-electron tomography: from cellular territories to molecular landscapes. Curr Opin Biotechnol 20:83–89

    Article  CAS  PubMed  Google Scholar 

  13. Hampton CM, Strauss JD, Ke Z, Dillard RS, Hammonds JE, Alonas E, Desai TM, Marin M, Storms RE, Leon F, Melikyan GB, Santangelo PJ, Spearman PW, Wright ER (2017) Correlated fluorescence microscopy and cryo-electron tomography of virus-infected or transfected mammalian cells. Nat Protoc 12:150–167

    Article  CAS  PubMed  Google Scholar 

  14. Wang S, Li S, Ji G, Huang X, Sun F (2017) Using integrated correlative cryo-light and electron microscopy to directly observe syntaphilin-immobilized neuronal mitochondria in situ. Biophys Rep 3:8–16

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Bos E, Hussaarts L, van Weering JRT, Ellisman MH, de Wit H, Koster AJ (2014) Vitrification of tokuyasu-style immuno-labelled sections for correlative cryo light microscopy and cryo electron tomography. J Struct Biol 186:273–282

    Article  PubMed  Google Scholar 

  16. Muller-Reichert T, Srayko M, Hyman A, O’Toole ET, McDonald K (2007) Correlative light and electron microscopy of early caenorhabditis elegans embryos in mitosis. Methods Cell Biol 79:101–119

    Article  PubMed  CAS  Google Scholar 

  17. Cv Rijnsoever, Oorschot V, Klumperman J (2008) Correlative light-electron microscopy (clem) combining live-cell imaging and immunolabeling of ultrathin cryosections. Nat Methods 5:973–980

    Article  CAS  Google Scholar 

  18. Watanabe S, Punge A, Hollopeter G, Willig KI, Hobson RJ, Davis MW, Hell SW, Jorgensen EM (2011) Protein localization in electron micrographs using fluorescence nanoscopy. Nat Methods 8:80–84

    Article  CAS  PubMed  Google Scholar 

  19. Valentijn JA, van Driel LF, Jansen KA, Valetijn KM, Koster AJ (2012) Toward a 3d view of cellular architecture: correlative light electron microscopy and electron tomography, 1st edn. Wiley, Netherlands

    Google Scholar 

  20. McDonald K (2007) Cryopreparation methods for electron microscopy of selected model systems. Methods in cell biology. Academic Press, Cambridge, pp 23–56

    Google Scholar 

  21. Luther PK, Lawrence MC, Crowther RA (1988) A method for monitoring the collapse of plastic sections as a function of electron dose. Ultramicroscopy 24:7–18

    Article  CAS  PubMed  Google Scholar 

  22. Schorb M, Gaechter L, Avinoam O, Sieckmann F, Clarke M, Bebeacua C, Bykov YS, Sonnen AF, Lihl R, Briggs JAG (2017) New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography. J Struct Biol 197:83–93

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Dubochet J, Adrian M, Chang JJ, Homo JC, Lepault J, McDowall AW, Schultz P (1988) Cryo-electron microscopy of vitrified specimens. Q Rev Biophys 21:129–228

    Article  CAS  PubMed  Google Scholar 

  24. Medalia O, Weber I, Frangakis AS, Nicastro D, Gerisch G, Baumeister W (2002) Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science 298:1209

    Article  CAS  PubMed  Google Scholar 

  25. McDonald KL, Auer M (2006) High-pressure freezing, cellular tomography, and structural cell biology. Biotechniques 41:137–143

    Article  CAS  PubMed  Google Scholar 

  26. Cyrklaff M, Frischknecht F, Kudryashev M (2017) Functional insights into pathogen biology from 3d electron microscopy. FEMS Microbiol Rev 41:828–853

    Article  CAS  PubMed  Google Scholar 

  27. Jun S, Zhao G, Ning J, Gibson GA, Watkins SC, Zhang P (2013) Correlative microscopy for 3d structural analysis of dynamic interactions. J Vis Exp 76:e50386

    Google Scholar 

  28. Spiegelhalter C, Laporte JF, Schwab Y (2014) Correlative light and electron microscopy: from live cell dynamic to 3d ultrastructure. In: Kuo J (ed) Electron microscopy: methods and protocols. Humana Press, Totowa, NJ, pp 485–501

    Chapter  Google Scholar 

  29. Kremer JR, Mastronarde DN, McIntosh JR (1996) Computer visualization of three-dimensional image data using imod. J Struct Biol 116:71–76

    Article  CAS  PubMed  Google Scholar 

  30. Patla I, Volberg T, Elad N, Hirschfeld-Warneken V, Grashoff C, Fassler R, Spatz JP, Geiger B, Medalia O (2010) Dissecting the molecular architecture of integrin adhesion sites by cryo-electron tomography. Nat Cell Biol 12:909–915

    Article  CAS  PubMed  Google Scholar 

  31. Koning RI, Celler K, Willemse J, Bos E, van Wezel GP, Koster AJ (2014) Correlative cryo-fluorescence light microscopy and cryo-electron tomography of streptomyces. Methods Cell Biol 124:217–239

    Article  PubMed  Google Scholar 

  32. Schwartz CL, Sarbash VI, Ataullakhanov FI, McIntosh JR, Nicastro D (2007) Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. J Microsc 227:98–109

    Article  PubMed  Google Scholar 

  33. Lucic V, Kossel AH, Yang T, Bonhoeffer T, Baumeister W, Sartori A (2007) Multiscale imaging of neurons grown in culture: from light microscopy to cryo-electron tomography. J Struct Biol 160:146–156

    Article  PubMed  Google Scholar 

  34. Rigort A, Bauerlein FJ, Leis A, Gruska M, Hoffmann C, Laugks T, Bohm U, Eibauer M, Gnaegi H, Baumeister W, Plitzko JM (2010) Micromachining tools and correlative approaches for cellular cryo-electron tomography. J Struct Biol 172:169–179

    Article  PubMed  Google Scholar 

  35. Sartori A, Gatz R, Beck F, Rigort A, Baumeister W, Plitzko JM (2007) Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography. J Struct Biol 160:135–145

    Article  PubMed  Google Scholar 

  36. van Driel LF, Valentijn JA, Valentijn KM, Koning RI, Koster AJ (2009) Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells. Eur J Cell Biol 88:669–684

    Article  PubMed  CAS  Google Scholar 

  37. Wang K, Strunk K, Zhao G, Gray JL, Zhang P (2012) 3d structure determination of native mammalian cells using cryo-fib and cryo-electron tomography. J Struct Biol 180:318–326

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Hsieh CE, Leith A, Mannella CA, Frank J, Marko M (2006) Towards high-resolution three-dimensional imaging of native mammalian tissue: electron tomography of frozen-hydrated rat liver sections. J Struct Biol 153:1–13

    Article  CAS  PubMed  Google Scholar 

  39. Ladinsky MS, Pierson JM, McIntosh JR (2006) Vitreous cryo-sectioning of cells facilitated by a micromanipulator. J Microsc 224:129–134

    Article  PubMed  Google Scholar 

  40. Gruska M, Medalia O, Baumeister W, Leis A (2008) Electron tomography of vitreous sections from cultured mammalian cells. J Struct Biol 161:384–392

    Article  CAS  PubMed  Google Scholar 

  41. Kim HW, Oh SH, Kim JW, Cho B, Park IS, Sun W, Rhyu IJ (2012) Efficient and accurate analysis of mitochondrial morphology in a whole cell with a high-voltage electron microscopy. J Electron Microsc (Tokyo) 61:127–131

    Article  CAS  Google Scholar 

  42. Okamoto K, Miyazaki N, Song C, Maia F, Reddy HKN, Abergel C, Claverie JM, Hajdu J, Svenda M, Murata K (2017) Structural variability and complexity of the giant pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy. Sci Rep 7:13291

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  43. Chang YW, Chen S, Tocheva EI, Treuner-Lange A, Lobach S, Sogaard-Andersen L, Jensen GJ (2014) Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography. Nat Methods 11:737–739

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Peckys DB, Dukes MJ, de Jonge N (2014) Correlative fluorescence and electron microscopy of quantum dot labeled proteins on whole cells in liquid. Methods Mol Biol 1117:527–540

    Article  CAS  PubMed  Google Scholar 

  45. Peckys DB, Korf U, de Jonge N (2015) Local variations of her2 dimerization in breast cancer cells discovered by correlative fluorescence and liquid electron microscopy. Sci Adv 1:e1500165

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  46. Kopek BG, Shtengel G, Xu CS, Clayton DA, Hess HF (2012) Correlative 3d superresolution fluorescence and electron microscopy reveal the relationship of mitochondrial nucleoids to membranes. Proc Natl Acad Sci USA 109:6136

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  47. Sochacki KA, Shtengel G, van Engelenburg SB, Hess HF, Taraska JW (2014) Correlative super-resolution fluorescence and metal-replica transmission electron microscopy. Nat Methods 11:305

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  48. Masich S, Östberg T, Norlén L, Shupliakov O, Daneholt B (2006) A procedure to deposit fiducial markers on vitreous cryo-sections for cellular tomography. J Struct Biol 156:461–468

    Article  CAS  PubMed  Google Scholar 

  49. Woehl TJ, Kashyap S, Firlar E, Perez-Gonzalez T, Faivre D, Trubitsyn D, Bazylinski DA, Prozorov T (2014) Correlative electron and fluorescence microscopy of magnetotactic bacteria in liquid: toward in vivo imaging. Sci Rep 4:6854

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  50. Sato C, Kinoshita T, Memtily N, Sato M, Nishihara S, Yamazawa T, Sugimoto S (2017) Correlative light-electron microscopy in liquid using an inverted sem (asem). Methods Cell Biol 140:187–213

    Article  PubMed  CAS  Google Scholar 

  51. Odermatt PD, Shivanandan A, Deschout H, Jankele R, Nievergelt AP, Feletti L, Davidson MW, Radenovic A, Fantner GE (2015) High-resolution correlative microscopy: bridging the gap between single molecule localization microscopy and atomic force microscopy. Nano Lett 15:4896–4904

    Article  CAS  PubMed  Google Scholar 

  52. Carlson DB, Gelb J, Palshin V, Evans JE (2013) Laboratory-based cryogenic soft x-ray tomography with correlative cryo-light and electron microscopy. Microsc Microanal 19:22–29

    Article  CAS  PubMed  Google Scholar 

  53. Agronskaia AV, Valentijn JA, van Driel LF, Schneijdenberg CTWM, Humbel BM, van Bergen en Henegouwen PMP, Verkleij AJ, Koster AJ, Gerritsen HC (2008) Integrated fluorescence and transmission electron microscopy. J Struct Biol 164:183–189

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We thank Dr. Peijun Zhang for the comments on the construction of cryo-fluorescence sample stage and the studies of cryo-correlative light and electron microscopy. This work was supported by grants from the research program of the Korea Basic Science Institute (grant number D37402), the National Research Council of Science & Technology which is funded by the Korean government (CRC-16-01-KRICT), 2017 Research grant from Kangwon National University (No. 520170496), the Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Science, ICT and Future Planning (2018R1D1A1B07045580 to H.S. Jung; NRF-2017M3A9G7072417 to D. Jeoung), and the Next-Generation BioGreen Program (SSAC, PJ013273042018 to H.S. Jung).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Sangmi Jun or Hyun Suk Jung.

Ethics declarations

Conflict of interest

The authors declare no conflict of interest in relation to this work.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Jun, S., Ro, HJ., Bharda, A. et al. Advances in Cryo-Correlative Light and Electron Microscopy: Applications for Studying Molecular and Cellular Events. Protein J 38, 609–615 (2019). https://doi.org/10.1007/s10930-019-09856-1

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10930-019-09856-1

Keywords

Navigation