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Geodesic Shooting for Computational Anatomy

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Abstract

Studying large deformations with a Riemannian approach has been an efficient point of view to generate metrics between deformable objects, and to provide accurate, non ambiguous and smooth matchings between images. In this paper, we study the geodesics of such large deformation diffeomorphisms, and more precisely, introduce a fundamental property that they satisfy, namely the conservation of momentum. This property allows us to generate and store complex deformations with the help of one initial “momentum” which serves as the initial state of a differential equation in the group of diffeomorphisms. Moreover, it is shown that this momentum can be also used for describing a deformation of given visual structures, like points, contours or images, and that, it has the same dimension as the described object, as a consequence of the normal momentum constraint we introduce.

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References

  1. V.I. Arnold, Mathematical Methods of Classical Mechanics, Springer, 1989. 1st edition 1978.

  2. V. Arnold and B. Khesin, “Topological methods in hydrodynamics” Ann. Rev. Fluid Mech., Vol. 24, pp. 145–166, 1992.

    Article  MathSciNet  Google Scholar 

  3. V.I. Arnold, “Sur la géometrie differentielle des groupes de Lie de dimension infinie et ses applications à l'hydrodynamique des fluides parfaits,” Ann. Inst. Fourier (Grenoble), Vol. 1, pp. 319–361, 1966.

    MATH  Google Scholar 

  4. M.F. Beg, M.I. Miller, A. Trouvé, and L. Younes, “Computing large deformation metric mappings via geodesics flows of diffeomorphisms,” Int. J. Comp. Vis., Vol. 61, No. 2, pp. 139–157, February 2005.

  5. V. Camion and L. Younes, “Geodesic interpolating splines,” in M.A.T. Figueiredo, J. Zerubia, and A.K. Jain (Eds.), EMMCVPR 2001, Vol. 2134 of Lecture Notes in Computer Sciences, Springer-Verlag, 2001, pp. 513–527.

  6. T. Chen and D. Metaxas, “Image segmentation based on the integration of Markov random fields and deformable models,” in Medical Image Computing and Computer-Assisted Intervention—Miccai 2000, Vol. 1935 of Lecture Notes in Computer Science, Springer-Verlag, 2000, pp. 256–265.

  7. G.E. Christensen, R.D. Rabbitt, and M.I. Miller, “Deformable templates using large deformation kinematics,” IEEE Trans. Image Processing, Vol. 5, No. 10, pp. 1435–1447, 1996.

    Google Scholar 

  8. I. Cohen, L. Cohen, and N. Ayache, “Using deformable surfaces to segment 3-d images and infer differential structures,” Computer Vision Graphics Image Processing, Vol. 56, No. 2, pp. 242–263, 1992.

    Google Scholar 

  9. T. Cootes, C. Taylor, D. Cooper, and J. Graham, “Active shape models—Their training and application,” Comp. Vision and Image Understanding, Vol. 61, No. 1, pp. 38–59, 1995.

    Google Scholar 

  10. M C. Delfour, and J.-P. Zolésio, Shapes and Geometries. Analysis, Differential Calculus and Optimization, SIAM, 2001.

  11. P. Dupuis, U. Grenander, and M. Miller, “Variational problems on flows of diffeomorphisms for image matching,” Quart. App. Math., Vol. 56, pp. 587–600, 1998.

    MathSciNet  Google Scholar 

  12. A. Garrido and N.P. De la Blancà, “Physically-based active shape models: Initialization and optimization,” Pattern Recognition, Vol. 31, No. 8, pp. 1003–1017, 1998.

  13. U. Grenander, General Pattern Theory. Oxford Univeristy Press, 1994.

  14. U. Grenander, Y. Chow, and D. Keenan, HANDS: A Pattern Theoretic Study of Biological Shapes. Springer-Verlag: New York, 1990.

    Google Scholar 

  15. U. Grenander and M.I. Miller, “Representations of knowledge in complex systems,” J. Roy. Stat. Soc. B, Vol. 56, No. 3, pp. 549–603, 1994.

    MathSciNet  Google Scholar 

  16. U. Grenander and M.I. Miller, “Computational anatomy: An emerging discipline,” Quart. App. Math., Vol. 56, pp. 617–694, 1998.

    MathSciNet  Google Scholar 

  17. S. Joshi and M.I. Miller, “Landmark matching via large deformation diffeomorphisms,” IEEE Trans. Image Processing, Vol. 9, No. 8, pp. 1357–1370, 2000.

    MathSciNet  Google Scholar 

  18. M. Kass, A. Witkin, and D. Terzopolous, “Snakes: Active contour models,” International Journal of Computer Vision, Vol. 1, No. 4, pp. 321–331, 1988.

    Google Scholar 

  19. J.E. Marsden, and T.S. Ratiu, Introduction to Mechanics and Symmetry. Springer, 1994.

  20. M. Mignotte and J. Meunier, “A multiscale optimization approach for the dynamic contour-based boundary detection issue,” Computerized Medical Imaging and Graphics, Vol. 25, No. 3, pp. 265–275, 2001.

    Article  Google Scholar 

  21. M. Miller, S. Joshi, D.R. Maffitt, J.G. McNally, and U. Grenander, “Mitochondria, membranes and amoebae: 1, 2 and 3 dimensional shape models,” in Statistics and Imaging, K. Mardia, (Ed.), Vol. II. Carfax Publishing: Abingdon, Oxon., 1994.

    Google Scholar 

  22. M. Miller, A. Trouvé, and L. Younes, “On the metrics and Euler-Lagrange equations of computational anatomy,” Annual Review of Biomedical Engineering, Vol. 4, pp. 375–405, 2002.

    Article  Google Scholar 

  23. M. Miller and L. Younes, “Group actions, homeomorphisms, and matching: A general framework,” International Journal of Computer Vision, Vol. 41(No. 1/2): pp. 61–84, 2001.

    Article  Google Scholar 

  24. J. Montagnat and H. Delingette “Volumetric medical images segmentation using shape constrained deformable models,” in Cvrmed-Mrcas'97, Vol. 1205 of Lecture Notes in Computer Science, Springer-Verlag, 1997, pp. 13–22.

  25. J. Montagnat, H. Delingette, and N. Ayache, “A review of deformable surfaces: Topology, geometry and deformation,” Image and Vision Computing, Vol. 19, No. 14, pp. 1023–1040, 2001.

    Article  Google Scholar 

  26. D. Mumford, “Pattern theory and vision,” in Questions Mathématiques En Traitement Du Signal et de L'Image, Institut Henri Poincaré, 1998, Chap. 3, pp. 7–13.

  27. S. Osher and J.A. Sethian, “Front propagating with curvature dependent speeds: Algorithms based on Hamilton-Jacobi formulation,” Journal of Comp. Physics, Vol. 79, pp. 12–49, 1988.

    MathSciNet  Google Scholar 

  28. D. Pham, C. Xu, and J. Prince, “Current methods in medical image segmentation,” Ann. Rev. Biomed. Engng., Vol. 2, pp. 315–337, 2000.

    Google Scholar 

  29. N. Schultz and K. Conradsen, “2d vector-cycle defonnable templates,” Signal Processing, Vol. 71, No. 2, pp. 141–153, 1998.

    Article  Google Scholar 

  30. S. Sclaroff and L.F. Liu, “Deformable shape detection and description via model-based region grouping,” IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 23, No. 5, pp. 475–489, 2001.

    Article  Google Scholar 

  31. L. Staib and J. Duncan, “Boundary finding with parametrically deformable models,” IEEE Trans. Pattern Analysis and Machine Intelligence, Vol. 14, pp. 1061–1075, 1992.

    Article  Google Scholar 

  32. L. Staib and J. Duncan, “Model-based deformable surface finding for medical images,” IEEE Trans. Medical Imaging, Vol. 15, No. 5, pp. 1–13, 1996.

    Article  Google Scholar 

  33. D. Terzopoulos and D. Metaxas, “Dynamic models with local and global deformations: Deformable superquadrics,” IEEE Trans. Patt. Anal. Mach. Intell., Vol. 13, pp. 703–714, 1991.

    Google Scholar 

  34. A. Trouvé and L. Younes, “Local geometry of deformable template,” SIAM Journal of Mathmatical Analysis (to appear).

  35. A. Trouvé, “Action de groupe de dimension infinie et reconnaissance de formes. C.R. Acad. Sci. Paris, Série I, No. 321, pp. 1031–1034, 1995.

  36. A. Trouvé, “Diffeomorphisms groups and pattern matching in image analysis,” Int. J. Computer Vision, Vol. 28, pp. 213–221, 1998.

    Article  Google Scholar 

  37. M. Vaillant and C. Davatzikos, “Finding parametric representations of the cortical sulci using an active contour model,” Medical Image Analysis, Vol. 1, No. 4, pp. 295–315, 1997.

    Article  Google Scholar 

  38. C.F. Westin, L.M. Lorigo, O. Faugeras, W.E.L. Grimson, S. Dawson, A. Norbash, and R. Kikinis, “Segmentation by adaptive geodesic active contours,” in Medical Image Computing and Computer-Assisted Intervention—MICCAI 2000, Vol. 1935 of Lecture Notes in Computer Science, Springer-Verlag, 2000, pp. 266–275.

  39. C. Xu, D.L. Pham, and J.L. Prince, “Finding the brain cortex using fuzzy segmentation, isosurfaces and deformable surface models,” in XVth Int. Conf. on info Proc. in Medical Imaging, June 1997.

  40. C. Xu, D.L. Pham, and J.L. Prince, “Medical image segmentation using deformable models,” in SPIE Handbook on Medical Imaging - Volume III: Medical Image Analysis, J. Fitzpatrick and M. Sonka, (Eds.) SPIE, Bellingham, WA, 2000, pp. 129–174.

    Google Scholar 

  41. C. Xu and J.L. Prince, “Gradient vector flow: A new external force for snakes,” CVRP, Nov. 1997.

  42. C. Xu and J.L. Prince, “Gradient vector flow deformable models,” in Handbook of Medical Imaging, I. Bankman, (Ed.), Academic Press: San Diego, CA, 2000.

    Google Scholar 

  43. A. Yezzi, A. Tsai, and A. Willsky, “A fully global approach to image segmentation via coupled curve evolution equations,” Journal of Visual Communication and Image Representation, Vol. 13, No. 1–2, pp. 195–216, 2002.

    Google Scholar 

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Correspondence to Michael I. Miller.

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Miller, M.I., Trouvé, A. & Younes, L. Geodesic Shooting for Computational Anatomy. J Math Imaging Vis 24, 209–228 (2006). https://doi.org/10.1007/s10851-005-3624-0

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