Background

Biodiversity represents the complexity of life and includes phenotypic, genotypic, taxonomic and ecological diversity [1]. Characterization of biodiversity of phytoplankton communities can help managers and researchers understand the status and trends in changes in the structure of ecosystems, e.g., due to stressors such as contamination with pollutants and nutrients [2]. Therefore, understanding the ecological processes, as well as abiotic and biotic factors that contribute to absolute and relative abundances of taxa in these communities are major goals of basic and applied community ecology. Metrics, such as species richness and the Shannon–Wiener diversity index, represent important tools for the characterization of changes in phytoplankton communities in aquatic ecosystems [3,4,5].

Compositions of phytoplankton communities are crucial determinants of structures of food webs in aquatic ecosystems, and because of their rapid responses to environmental stressors such as pollution these are considered to be important environmental indicators [6,7,8,9]. Results of previous studies have suggested that water temperature (WT), water level, seasonality, optical properties, and nutrients, especially nitrogen (N) and phosphorus (P) are the main factors that affect the composition of phytoplankton communities [9,10,11,12,13,14,15]. Hydrodynamic force, mixing depth, and euphotic depth were also important physical factors that influenced phytoplankton dynamics and bloom condition [16, 17]. Species compositions and richness of phytoplankton can also be altered by exposure to pollution, such as metals [18, 19]. Thus, to protect biodiversity and restore aquatic ecosystems, there is a need for regular monitoring to ascertain that these water quality parameters are within acceptable levels, and it is important to understand the impact of the changing environment on the structure of phytoplankton communities. Although productivity of phytoplankton, expressed as concentrations of Chlorophyll a, has been suggested as a robust indicator for assessment of quality of ecosystems [20], relationships between productivity and composition and diversity of phytoplankton have been seldom studied in aquatic ecosystems.

Due to human activities and climate changes, eutrophication of lakes have been global problems, and can cause significant shifts in phytoplankton communities resulting over-dominance of unwanted taxa, such as cyanobacteria [21]. Cyanobacteria blooms are expected to become more frequent, of greater severity and duration worldwide [22], posing serious threats to the health of many surface water ecosystems, and as such affecting the safety of drinking water sources [23]. Because of their unique characteristics, such as adapting low or high light, in the presence of excess nutrients, cyanobacteria have competitive advantages of many other species of plankton. Several cyanobacteria, such as Microcystis spp., Dolichospermum flos-aquae, and Oscillatoria tenuis, can produce toxins [24, 25], such as microcystins (MCs) [26], microcystins, especially microcystin-LR (MC-LR; L for leucine and R for arginine), are widely distributed across eutrophic freshwater ecosystems and have been shown to be toxic to a wide range of aquatic organisms and humans [27,28,29,30,31]. However, the impacts of MC-LR on structure and diversity of aquatic communities specifically phytoplankton communities have been rarely reported in natural waters [5, 32].

As the third-largest lake in China, Tai Lake is a shallow lake that is a critical source of drinking water for several populous cities of China. However, due to numerous anthropogenic stressors, between 1998 and 2007, a number of blooms of cyanobacteria occurred throughout the year, except for January and February [33]. Between 2008 and 2011, the frequency of algae blooms was increasing, and blooms occurred even in January [34]. Blooms of cyanobacteria first appeared in Meiliang Bay of Tai Lake in the 1980s [35], and previous studies found that absolute and relative density of phytoplankton in Tai lake was highest in this bay [36,37,38]. However, phytoplankton in the other areas of Tai Lake was seldom surveyed. In addition, since the most common freshwater cyanobacterium, Microcystis spp. [39], is also a dominating and problematic species in Tai Lake, this species has been extensively researched [40,41,42]. However, effects of the dominant taxa on the other taxa of phytoplankton during cyanobacteria blooms were seldom studied in the lake.

In the present study, variations in environmental conditions and communities of phytoplankton were investigated monthly at seven different locations of Tai Lake in 2015. The aims of this study were to (1) explore potential effects of environmental parameters on the structures of phytoplankton communities; (2) determine relationships between phytoplankton productivity and diversity: and (3) identify factors driving changes in dominant taxa of phytoplankton. Addressing these important ecological questions could help managers better understand biodiversity of plankton community and better make decision to protect this important shallow lake.

Methods

Study area

Tai Lake is located between Jiangsu and Zhejiang Province. Communities of phytoplankton were investigated monthly at seven different sites, which are two of the most densely populated regions in China. Tai Lake has an area of 2338 km2, with a maximum length and width of 68.5 and 56 km, respectively. The average depth is approximately 1.9 m and the average annual air temperature is between 16.0 and 18.0 °C. The annual mean precipitation is between 1100 and 1150 mm. In the present study, seven sampling locations were established in Tai Lake (Fig. 1), which represented areas of differing ecological characteristics across the entire Lake. Specifically, they were in the eastern bay (TH1), Meiliang Bay (TH2), southwest area of the lake (TH3), northwest area of the lake (TH4), central lake (TH5), and Gonghu Bay (TH6 and TH7).

Fig. 1
figure 1

Locations of seven sampling sites in Tai Lake

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Sampling

Collection of water and analyses

Sampling was performed at seven locations each month from January to December in 2015. In brief, water was collected from a depth of 0.5 m below the surface, stored in glass containers at 0–4 °C in the dark, brought to the laboratory, and processed within 12 h for each sample based on standard methods [43]. Water temperature (WT), pH, dissolved oxygen (DO), and conductivity were measured in situ by use of YSI water quality sondes (YSI Incorporated, 6600V2-4, Ohio, USA). Water transparency (SD) was determined with a 30-cm Secchi disk. Analysis of CODCr, CODMn, TP, TN, BOD5, NH4+-N, F−, As, Pb, Cu, and Chl a in water samples was based on a standard method [43]. Enzyme-linked immune sorbent assay (ELISA) was used to measure concentrations of MC-LR [44, 45], and the assay kits were bought from institute of hydrobiology of Chinese academy of sciences. The TN/TP ratio (NPR) was calculated. Based on five limnological parameters, including SD, CODMn, TP, TN, and Chl a, the synthesized trophic state index (STSI) was calculated for each water sample and used to assess eutrophication status (Additional file 1: Table S1) [46,47,48].

Collection of phytoplankton and analyses

In brief, 1000 mL samples of water were collected at each location, and phytoplankton was fixed in acid Lugol’s solution and transported to laboratory at 4 °C [43]. Identification of phytoplankton was performed to the species level and enumerated by counting at least 30 random fields in Sedgewick-Rafter sedimentation chambers (30 mL) using an inverted microscope (BX53, Olympus, Japan) [43, 49,50,51]. Numbers of cells of each taxon, as well as dimensions of individuals, including maximum linear dimension, were estimated. The dominant taxa were identified in the following equation [52]:

$$ Y = \, \left( {n_{i} /N} \right)f_{i} , $$
(1)

where ni is the number of cells of the ith taxa, fi is the frequency of the ith taxa appearing at the survey sites; N is the number of phytoplankton taxa observed during the study. When Y > 0.02, the taxa were classified as being dominant in the phytoplankton community.To determine diversity of phytoplankton communities, commonly used diversity indicators, included species richness (S), the Shannon–Wiener index (H′), the Simpson index (Ds), the Berger and Parker index (Db), and Pielou evenness index (J) were calculated by PRIMER software version 6.1.10 (Lutton, Ivybridge, United Kingdom).

Species diversity was estimated by Shannon–Wiener index, Simpson index, and Berger–Parker index, which are members of Renyi diversity family, as given the following equation [53, 54]:

$$ {\text{HR}}_{\alpha } = \frac{1}{1 - \alpha }{ \log }\mathop \sum \limits_{i = 1}^{s} Pi^{\alpha } . $$
(2)

This is a one-parametric diversity index family in which diversity of an assemblage is characterized by a diversity profile instead of a numerical value (Additional file 1: Fig. S1). By increasing the scale parameter (α), contributions of abundant species to the diversity of the assemblage increase, while contributions of rare species decrease. Researchers who want the index to be sensitive to the compositions of more abundant species but relatively indifferent to that of more rare species can use the diversity indices of Renyi family [55]. The values of Renyi diversity are lgS, H′, Ds, and Db when the following α values were used 0, 1, 2, and ∞ respectively.

Data analyses

Differences in water quality parameters or phytoplankton indicators during months or four seasons, and among seven sites in Tai Lake were analyzed by use of the Kruskal–Wallis, non-parametric test (SPSS 22.0, Chicago, Illinois, USA). A linear regression analysis was used to elucidate relationships between phytoplankton productivity (Chl a) and diversity metrics in Tai Lake (SPSS 22.0, Chicago, Illinois, USA). A p value < 0.05 was used as the threshold for statistical significance. The Multi-Response Permutation Procedure (MRPP, mrpp function in R package vegan) was used to determine differences in community composition and structure among locations and months. The null hypothesis was that there was no difference among the groups in a Monte Carlo randomization procedure with 999 permutations. To explore potential effects of environmental parameters on phytoplankton communities (Objective 2), the following preliminary data analyses were conducted. First, rare species with relative abundance < 0.5% when all samples were summed were excluded; this requirement reduced the number of taxa in the analysis from 124 to 31. Second, species counts were converted to relative abundances (0–100%), which were Hellinger transformed to reduce the weight of abundant species, while preserving Euclidean distances between samples in the multidimensional space [56]. Third, environmental variables with significant multicollinearity (with variance inflation factor > 10 and Spearman’s rank correlation coefficient |r| ≥ 0.75) were excluded. STSI was removed due to its greater correlations with TP (Additional file 1: Table S2) and the other 17 environmental variables were included in the following analyses. A preliminary detrended correspondence analysis (DCA) on the species data produced a longest gradient length of 3.18 along the first axis, which suggested that redundancy analysis (RDA) was appropriate [57]. RDA was performed by use of the rda function and tested for significance using the anova function. Only when it was significant, forward selection and Monte Carlo permutations (999 iterations) were used to select variables that significantly (p < 0.05) explained the variance in species composition. Forward selection was performed by use of the envfit function in R package vegan. Furthermore, generalized linear models (GLMs) with Gaussian error distribution [58] were used to examine influencing factors of different algal indices (e.g., diversity indices, the dominant taxa) (Objective 3). The best approximating model was selected, based on Akaike’s information criterion (AIC) [59], using function stepAIC in R package MASS. GLMs were performed with all environmental variables, except for STSI which was excluded due to its greater correlations with TP (see also above). The reason GLMs were selected rather than univariate analyses was because GLM models interpret importance of variables in a multivariate setting [60]. All these analyses were performed with R software version 3.3.2.

Results

Water quality parameters

Mean values of water quality parameters varied among seven sampling locations (Table 1). Concentrations of Chl a, measuring of phytoplankton productivity that covered the whole trophic spectrum, ranged between 5.0 and 362 μg/L in Tai Lake. The largest synthesized trophic state index (STSI) was observed at TH4, while the least was observed at TH1. Greatest concentrations of MC-LR (0.352 μg/L) were observed at TH2, and least concentrations (0.069 μg/L) were observed at TH1. For concentrations of pollutants at the seven locations, TH4 seemed to be most contaminated, whereas TH1 (the eastern region) and TH5 (the central lake) were less contaminated (p < 0.000001).

Table 1 Monthly values (mean ± SD) of water parameters at seven sampling sites from January to December of 2015 in Tai Lake
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Phytoplankton community composition and diversity

During a period of January to December of 2015, 124 taxa of phytoplankton, including eight phyla 21 taxa Cyanophyta, 63 Chlorophyta, 25 taxa of Bacillariophyta, 3 Cryptophyta, 4 Pyrrophyta, 7 Euglenophyta, and 1 Chrysophyta, were found in Tai Lake. These taxa belonged to 68 genera, including 13 genera of Cyanophyta, 27 genera of Chlorophyta, 17 genera of Bacillariophyta, 2 genera of Cryptophyta, 4 genera of Pyrrophyta, 4 genera of Euglenophyta, and 1 genera of Chrysophyta, were observed. Over the 12 months, relatively large densities of phytoplankton were observed at all seven locations in Tai Lake (Additional file 1: Fig. S2), with the greatest density of approximately 9.0 × 108 cells/L at site TH4 in July. The second greatest density of phytoplankton was 7.4 × 108 cells/L, which was observed at TH3 in July. Among all these monitored locations, TH7 in Gonghu Bay exhibited lesser densities of phytoplankton, ranging from 2.1 × 106 to 6.8 × 107 cells/L over the 12 months (p = 0.009).

In the present study, Cyanophyta was the dominant phylum in Tai Lake, with a mean percentage of abundance of 79.5%, followed by Chlorophyta, Bacillariophyta and Cryptophyta, with relative abundances of 12.9, 6.2 and 1.3%, respectively. Assemblages of phytoplankton in Tai Lake were dominated by Cyanophyta, including Microcystis sp. (Y = 0.80) and Dolichospermum flos-aquae (Y = 0.08). Based on monthly data, Dolichospermum flos-aquae was the dominant species in Tai Lake from February to March; Planctonema sp. of Chlorophyta was the most dominant species in May, while Microcystis sp. was dominant taxa in the nine other months (Fig. 2). In addition, Microcystis sp. was the absolutely dominant taxa from June to December. Meanwhile, average percentage of Microcystis sp. density in the phytoplankton community at TH4 was greatest to about 65.9%, followed by TH2 and TH6, with 63.0 and 57.0%, respectively (Table 2). Phytoplankton indicators at the seven locations in Tai Lake are shown in Table 2. The diversity of H′ and J at TH5 was greatest among the seven locations, while TH4 was the least (p < 0.01). Differences in phytoplankton indicators were significant among four seasons in Tai Lake. Diversity (Ds, H′ and Db) and evenness (J) of phytoplankton communities in spring were greatest among four seasons in Tai Lake, while diversity of phytoplankton was least in summer (Additional file 1: Fig. S3). Differences in structures of phytoplankton communities were significant among seven locations in Tai Lake (MRPP: A = 0.031, p < 0.05), and differences in structures of communities of phytoplankton were also significant among months (MRPP: A = 0.242, p < 0.01).

Fig. 2
figure 2

Percentages of dominant taxa (Microcystis sp., Anabaena flos-aquae, Planctonema sp. and Melosira sp.) in phytoplankton community and their temporal changes from January to December of 2015 in Tai Lake

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Table 2 Percentages (mean ± SD) of densities of dominant taxa and values (mean ± SD) of phytoplankton indicators (diversity) at seven sampling sites from January to December of 2015 in Tai Lake
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Relationships between species composition and environmental variables

Using a linear regression analysis, the relationships between phytoplankton productivity and diversity of S, Ds, H′, J, and Db are shown in Fig. 3 (r2 = 0.132, p = 0.232; R r2 = − 0.432, p < 0.001; r2 = − 0.392, p < 0.001; r2 = − 0.418, p < 0.001; r2 = − 0.323, p < 0.01, respectively). The species richness was positively, though not significantly, associated with productivity of phytoplankton (Fig. 3a), while significantly inverse relationships for the other four metrics of Ds, H′, J, and Db (Fig. 3b–e).

Fig. 3
figure 3

Scatter plots and linear regressions between productivity of phytoplankton (expressed in Chl a; log transformed) and measures of diversity of the phytoplankton community (S (log transformed), Ds, H′, Db and J) in Tai Lake. The curves were fitted based on n = 84 data points. The equation and p value for the specific linear regressions are given in each panel

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RDA was carried out on 17 environmental variables against Hellinger-transformed abundance species data with 999 permutations and significant relationships were determined by use of a global test (F = 2.446, p < 0.001). Among the 17 environmental variables, 11 parameters (WT, pH, SD, DO, CODMn, BOD5, TP, CODCr, F−, As and MC-LR) were significantly correlated (p < 0.05, 999 Monte Carlo permutations, Table 3) and accounted for 33.5% of the variance in the algae data. The first RDA axis, representing 21.5% variance of the species data, was significantly associated with WT, pH, SD, DO, CODCr, F−, As and MC-LR. RDA axis 2 contributed additional 6.3% to the explained variance and was characterized significantly by CODMn, BOD5 and TP (Table 3).

Table 3 Results of forward selection with 999 Monte Carlo permutations of environmental variables for species composition
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Factors associating with phytoplankton indicators

Relationships among various indices, including diversity indices, dominant taxa and environmental variables were analyzed by use of generalized linear models (GLMs). WT, CODMn, BOD5, MC-LR and NPR were the main factors that affected most parameters (Table 4). Several parameters, such as Chl a, S, total density, Microcystis sp., Melosira sp., Cyanophyta, Chlorophyta, and percent of Dolichospermum flos-aquae density were significantly related with WT (Table 4). Phytoplankton diversity indices (H′, J and Db) were significantly related with BOD5, MC-LR and NPR.

Table 4 Results of the best approximating generalized linear model (GLM), with Gaussian error distribution to explain the variation in phytoplankton indices (n = 84) and densities of dominant taxa
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Discussion

Temporal changes in phytoplankton communities of Tai Lake

Tai Lake is a large shallow lake, which provides hospitable environment for phytoplankton, and phytoplankton communities have changed over time (Table 5). In the 1960s, there were 91 genera of phytoplankton belonging to eight phyla, which were more frequently observed compared to the present study. Although the mean percent of Cyanophyta among constituents of phytoplankton density was 96.6% in the western area of the lake in 1960s, the greatest density of total phytoplankton was only 6.6 × 105 cells/L in Tai Lake [61], and were much less than densities observed in this study (Additional file 1: Fig. S2). Meanwhile, at that time, the community was dominated by Bacillariophyta–Chlorophyta in TH3, which is in the southwest of the lake. Concentrations of nutrients (Nitrogen: 0.15 mg/L, PO43−P: 0.05 mg/L) and pollutants (CODMn: 1.90 mg/L) in the whole Tai Lake were also less than those measured here (Table 1). Since 1980s, cell density of phytoplankton increased in the rate of 5.8 times per year. Subsequently, blooms of cyanobacteria led to a drinking water crisis in summer of 2007; numbers of phytoplankton in Meiliang Bay ranged from 3.0 × 106 to 3.7 × 109 cells/L, with a maximum density of phytoplankton occurring in June in 2008 [62].

Table 5 Comparaison of changes in numbers of phytoplankton communities at the genus level of Tai Lake in 1960s and the present study (2015)
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The structure of the phytoplankton community in Tai Lake is still changing but in a good direction. In the present study, Microcystis sp. and Dolichospermum flos-aquae of Cyanophyta, and Planctonema sp. of Chlorophyta were still predominant taxa observed (Fig. 2). Numbers of phytoplankton at the seven locations studied ranged from 2.5 × 106 to 9.0 × 108 cells/L. In Meiliang Bay, the number of phytoplankton ranged from 3.2 × 106 to 2.4 × 108 cells/L, that was less than that in 2008 [62]. This result was probably because nitrogen and phosphorus have been controlled in Tai Lake since the drinking water crisis of 2007. Many ecological restoration projects used a wetland system to treat the rural wastewater removing nitrogen in the Lake [63]. Therefore, concentrations of TN and TP observed in 2015 were less than reported before [64].

In the present study, numbers of cells of cyanobacteria were still high in the lake, and concentrations of N and P were still greater than the thresholds of 0.80 and 0.05 mg/L, respectively, limiting blooms of Microcystis in Tai Lake [38]. In 2015, 68 genera of phytoplankton among seven phyla were observed, which was less than the 91 genera in eight phyla in 1960s [61]. The dominance (Y) of Microcystis sp. in Tai Lake was the greatest (Fig. 2), which was consistent with results of a previous study that phytoplankton of eutrophic shallow lakes was frequently dominated by one species or species of the same functional group, resulting in species-pure algal assemblages [65]. Phyla including Pyrrophyta, Euglenophyta and Chrysophyta appeared rarely in Tai Lake, which is consistent with the previous studies in eutrophic waters [66]. As nutrient concentrations and phytoplankton blooms were increasing, transparency was low in Tai Lake and cyanobacteria can outcompetes subsurface phytoplankton species by reducing photosynthetically available light through shading [67, 68].

Relationships between phytoplankton productivity and diversity

In general, diversity curves are either concave-down or exhibit increasing functions with productivity [55, 69]. Retention and concentrations of nutrients are relatively high and residence time is long in Tai Lake [35]. Thus, the morphometric and hydrologic parameters are favorable for development of great biomasses of phytoplankton. In the present study, various shapes of relationships between productivity and diversity were observed. Diversity metrics of H′, Ds, Db and J showed similar changes along the productivity gradient in Tai Lake (Fig. 3b–e). An inverse relationship was observed between diversity of the phytoplankton community and primary production in Tai Lake. Results of a previous study [65] have demonstrated that dominance of bloom-forming cyanobacteria that can more successfully compete for light, exerted strong negative effects on other species of phytoplankton. In contrast, the logarithm of species richness was slightly and positively correlated with primary productivity in Tai Lake, which was consistent with previous findings [70], showing that productivity could determine the upper values of diversity metrics and lesser values of species richness were found in the whole productivity range. The results of previous studies that focused on the decisive role of physical disturbances in determining diversity and the productivity–diversity relationship for phytoplankton in lakes, suggested that the relationships between productivity and diversity can be used to assess ecological state [70, 71]. The results of this study indicated that diversity of phytoplankton communities is significantly related to trophic status and overall primary production in Tai Lake.

Factors effecting on structure of the phytoplankton community

WT, pH, CODMn, BOD5, TP, NPR, As and MC-LR were the main factors effecting structures of the phytoplankton community in Tai Lake (Tables 3 and 4). The pH (from 7.29 to 9.07) in 2015 was greater than those (from 7.30 to 8.10) observed in the 1960s, and numbers of cyanobacteria was greater than they were in 1960s [61]. When photosynthesis of algae consumed inorganic carbon, the carbonate-buffering capacity of the Tai lake was decreased, which increased pH [72, 73]. The researchers explained that photosynthesis is increasing pH by CO2 consumption; cyanobacteria have the ability to use HCO3− [74] which could be part of their competitive advantage under higher pH conditions.

Temperature is a crucial factor affecting the composition of the phytoplankton community, and greater numbers of cells usually observe in warmer seasons [14]. Furthermore, temperature is the most important factor controlling which phytoplankton taxa is present in freshwater lakes [75, 76]. Results of the current study are consistent with results of previous studies [77,78,79,80], and showing that cyanobacteria-dominated phytoplankton communities in warmer seasons. Once critical concentrations of nutrients were exceeded, temperature was the principal factor driving blooms of Microcystis [81, 82]. Compared with Bacillariophyta, Cyanophyta have a competitive advantage under conditions of greater temperature, especially when temperature of water exceeds 25 °C [13, 83]. In addition, Gala and Giesy [84] demonstrated that UV light can penetrate into water, especially in shallow lakes, and that phytoplankton exhibited differential sensitivities. Hence, there can be seasonal changes in relative densities due to these differential sensitivities and cyanobacteria are the least sensitive class of taxa. Even though arsenic (As) can isomorphically substitute for phosphorus (P), it was not conducive to growth of algae. In the present study, significantly negative correlations between concentrations of As and concentrations of Chl a and total numbers of phytoplankton were observed (Table 4). Phytoplankton can be involved in geochemical cycling of As in aquatic ecosystems [85, 86]. In fact, there are some phytoplankton, especially cyanobacteria, that are resistant to adverse effects of As [87, 88], because they contain a class of proteins similar to metallothioneins [89] and could accumulate and transform As. Concentrations of phosphorus cannot rescue other species from the toxic effects of As.

Since growth and reproduction of phytoplankton requires absorption of nutrients, such as N and P, concentrations of these nutrients have an important impact on structures of phytoplankton communities [38, 90, 91]. Species richness of phytoplankton changed as a function of the ratio of N to P (NPR) [92, 93]. In Tai Lake, Microcystis spp. was the most competitive among taxa of phytoplankton. This observation is supported by the significantly negative relationship between concentrations of MC-LR and indicators of diversity (H′, J and Db) of the phytoplankton community (Table 4). Results of this study also demonstrated that Cyanophyta, such as Microcystis spp., had a negative effect on growth and relative proportions of other phytoplankton. Toxins derived from cyanobacteria can reduce the growth of diatoms [94]. Specifically, Microcystis spp. and Pseudanabaena spp. can produce extracellular products that are toxic to both aquatic organisms and humans [95,96,97]. Our findings indicated that blooms of Microcystis resulted in less stability of structure of the phytoplankton community. This result was consistent with a previous study, in which extracellular products of Cyanophyta promoted clustering of cyanobacterial cells, which might be due to the toxins inducing algal cells to release polysaccharides [98]. Furthermore, formation of clusters helped cyanobacteria in escaping predation by zooplankton [99]. Collectively, results of the present study demonstrated that MC-LR was significantly and negatively associated with diversity of aquatic communities, which were consistent with results of a previous study (Li et al. [32]).

Conclusions

The present study investigated the structure of the phytoplankton community over a period of January to December of 2015 in Tai Lake and demonstrated that the structure of phytoplankton community was changed as the changing concentrations of nutrients and other stressors. WT, pH, permanganate index (CODMn), BOD5, TP, As, TN/TP ratio (NPR) and MC-LR were the main factors that influenced the structure of the phytoplankton community in Tai Lake. The results demonstrated that Simpson, Shannon–Wiener, Berger and Parker and the Pielou evenness indices could be used to assess and monitor for status and trends in water quality of Tai Lake. This research will be helpful in understanding the changing environment on biodiversity in aquatic ecosystems.