Abstract. Previous studies have established links between biodiversity and soil geochemistry in the McMurdo Dry Valleys, Antarctica, where environmental gradients are important determinants of soil biodiversity. However, these gradients are not well established in the Central Transantarctic Mountains, which are thought to represent some of the least hospitable Antarctic soils. We analyzed 220 samples

Terrestrial paleoclimate records are rare in the South Atlantic, limiting opportunities to provide a prehistoric context for current global changes. The tussock grass, Poa flabellata, grows abundantly along the coasts of the Falkland Islands and other subantarctic islands. It forms extensive peat records, providing a promising opportunity to reconstruct high-resolution regional climate records. The

Photosynthesis by terrestrial plants represents the majority of CO2 uptake on Earth, yet it is difficult to measure directly from space. Estimation of gross primary production (GPP) from remote sensing indices represents a primary source of uncertainty, in particular for observing seasonal variations in evergreen forests. Recent vegetation remote sensing techniques have highlighted spectral regions

Fire frequency exerts a fundamental control on productivity and nutrient cycling in savanna ecosystems. Individual fires often increase short-term nitrogen (N) availability to plants, but repeated burning causes ecosystem N losses and can ultimately decrease soil organic matter and N availability. However, these effects remain poorly understood due to limited long-term biogeochemical data. Here, we

Abstract. Freshwaters are important emitters of carbon dioxide (CO2) and methane (CH4) to the atmosphere, two potent greenhouse gases (GHG). While aquatic surface GHG fluxes have been extensively measured, there is much less information about their underlying sources. In lakes and reservoirs, surface GHG can originate from horizontal riverine flow, the hypolimnion, littoral sediments, and water column

Abstract. Redox sensitive iron (Fe) oxyhydroxides participate in the biogeochemical cycling of nutrients and trace metals. Their co-precipitation with organic matter (OM) leads to environmentally relevant OM-Fe associations. The stability of OM in such associations is still uncertain. It has been proposed that OM either increases the stability of the complex against reductive dissolution or enhance

Abstract. The Arabian Sea (AS) hosts one of the most intense oxygen minimum zones (OMZs) in the world. Observations show a decline of O2 in the northern AS over the recent decades accompanied by an intensification of the suboxic conditions there. Over the same period, the local sea-surface temperature has risen significantly, particularly over the Arabian Gulf (also known as Persian Gulf, hereafter

The temperature proxies U37K′, LDI, TEX86H, and RI-OH are derived from lipid biomarkers, namely long-chain alkenones from coccolithophorids and long-chain diols ascribed tentatively to eustigmatophytes, as well as glycerol dialkyl glycerol tetraethers (GDGTs) and OH-GDGTs produced by Archaea. The applicability of these proxies in the South China Sea (SCS) has been investigated previously. However,

Abstract. Bioavailable Fe is an essential nutrient for phytoplankton that allows organisms to flourish and drawdown atmospheric CO2 affecting global climatic condition. In marine locales remote from the continents extraterrestrial-dust provides an important source of Fe and thus moderates primary productivity. Here we provide constraints on partitioning of extraterrestrial Fe between seawater and sediments

Abstract. Previous studies have shown that microbially produced methane can be a dominant carbon source of lacustrine sedimentary macrofauna in eutrophic lakes, most likely through grazing on methane-oxidizing bacteria. Here we investigate the contributions of different carbon sources to macrofaunal biomass across five lakes in central Switzerland that range from oligotrophic to highly eutrophic. Macrofaunal

Airborne bacteria are widespread as a major proportion of bioaerosols, and their coexistence with dust particles enables both bacteria and dust particles to be more active in ice cloud formation and to be harmful to public health. However, the abundance and viability of particle-attached and free-floating bacteria in dusty air have not been quantitatively investigated. We researched this subject based

Abstract. Boreal forest soils are globally an important sink for methane (CH4), while these soils are also capable to emit CH4 under favourable conditions. Soil wetness is a well-known driver of CH4 flux, and the wetness can be estimated with several terrain indices developed for the purpose. The aim of this study was to quantify the spatial variability of the forest floor CH4 flux with a topography-based

Abstract. Complex microbial communities facilitate iron and methane transformations in anoxic ‎methanic sediments of freshwater lakes, such as Lake Kinneret (The Sea of Galilee, Israel). The ‎phylogenetic and functional diversity of these consortia are not fully understood, and it is not ‎clear which lineages perform iron reduction, anaerobic oxidation of methane (AOM) or both ‎‎(Fe-AOM). Here, we

Abstract. While the entire Arctic Ocean is warming rapidly, the Barents Sea in particular is experiencing significant warming and sea ice retreat. An increase in ocean heat transport from the Atlantic is causing the Barents Sea to be transformed from a cold, salinity stratified system into a warmer, less-stratified Atlantic-dominated climate regime. Productivity in the Barents Sea shelf is fuelled

Abstract. Grasslands provide many important ecosystem services globally and forecasting grassland productivity in the coming decades will provide valuable information to land managers. Productivity models can be well-calibrated at local scales, but generally have some maximum spatial extent in which they perform well. Here we evaluate a grassland productivity model to find the optimal spatial extent

Abstract. Estimates of the gross terrestrial carbon uptake exhibit large uncertainties. Sun-induced chlorophyll fluorescence (SIF) has an apparent near-linear relationship with gross primary production (GPP). This relationship will potentially facilitate the monitoring of photosynthesis from space. However, the exact mechanistic connection between SIF and GPP is still not clear. To explore the physical

Sediment–water oxygen fluxes are widely used as a proxy for organic carbon production and mineralization at the seafloor. In situ fluxes can be measured non-invasively with the aquatic eddy covariance technique, but a critical requirement is that the sensors of the instrument are able to correctly capture the high-frequency variations in dissolved oxygen concentration and vertical velocity. Even small

Abstract. In the ocean, remineralisation rate associated with sinking particles is a crucial variable. Since the 90's, particulate biogenic barium (Baxs) has been used as an indicator of carbon remineralization by applying a transfer function relating Baxs to O2 consumption (Dehairs's transfer function, Southern Ocean-based). Here, we tested its validity in the Mediterranean Sea (ANTARES / EMSO-LO)

Thermokarst features are widespread in ice-rich regions of the circumpolar Arctic. The rate of thermokarst lake formation and drainage is anticipated to accelerate as the climate warms. However, it is uncertain how these dynamic features impact the terrestrial Arctic carbon cycle. Methane (CH4) and carbon dioxide (CO2) fluxes were measured during peak growing season using eddy covariance and chambers

Vegetation regulates the exchange of water, energy, and carbon fluxes between the land and the atmosphere. This regulation of surface fluxes differs with vegetation type and climate, but the effect of vegetation on surface fluxes is not well understood. A better knowledge of how and when vegetation influences surface fluxes could improve climate models and the extrapolation of ground-based water, energy

Abstract. Plant phenology plays a fundamental role in land-atmosphere interactions, and its variability and variations are an indicator of climate and environmental changes. For this reason, current land surface models include phenology parameterizations and related biophysical and biogeochemical processes. In this work, the climatology of beginning and end of the growing season, simulated by seven

Abstract. Arctic coastal ecosystems are rapidly changing due to climate warming, which makes modelling their productivity crucially important to better understand future changes. System primary production in these systems is highest during the pronounced spring bloom, typically dominated by diatoms. Eventually the spring blooms terminate due to silicon or nitrogen limitation. Bacteria can play an important

Abstract. We conducted a four-year warming × moisture × N-deposition field-experiment (AlpGrass) with 216 turf monoliths from six different subalpine pastures (sites of origin). At a common location, the monoliths were replanted at six climate scenario sites (CS) along an altitudinal gradient from 2360 to 1680 m a.s.l., representing an April–October temperature change of −1.4 °C to +3.0 °C, compared

Increases in global temperatures due to climate change threaten to tip the balance between carbon (C) fluxes, liberating large amounts of C from soils. Evidence of warming-induced increases in CO2 efflux from soils has led to suggestions that this response of soil respiration (RS) will trigger a positive land C–climate feedback cycle, ultimately warming the Earth further. Currently, there is little

Abstract. The Deep Chlorophyll Maximum (DCM) is a well known feature of the global ocean. However, its description and the study of its formation are a challenge, especially in the peculiar Black Sea environment. The retrieval of Chlorophyll a (Chla) from fluorescence (Fluo) profiles recorded by Biogeochemical-Argo (BGC-Argo) floats is not trivial in the Black Sea, due to the very high content of Colored

Abstract. Heterotrophic marine bacteria utilize organic carbon for growth and biomass synthesis. Thus, their variability is key to the balance between the production and consumption of organic matter and ultimately particle export in the ocean. Here we investigate a potential link between bacterial traits and ecosystem functions in a rapidly changing polar marine ecosystem based on a bacteria-oriented

Abstract. Headspace analysis of CO2 frequently has been used to quantify the concentration of CO2 in freshwater. According to basic chemical theory, not considering chemical equilibration of the carbonate system in the sample vials will result in a systematic error. In this paper we provide a method to quantify the potential error resulting from simple application of Henry's law to headspace CO2 samples

Abstract. Pure culture studies provide evidence of the ability of soil fungi to produce nitrous oxide (N2O) during denitrification. Soil studies with selective inhibition indicated a possible dominance of fungal compared to bacterial N2O production in soil, which drew more attention to fungal denitrification. Analyzing the isotopic composition of N2O, especially the 15N site preference of N2O produced

The CloudRoots field experiment was designed to obtain a comprehensive observational dataset that includes soil, plant, and atmospheric variables to investigate the interaction between a heterogeneous land surface and its overlying atmospheric boundary layer at the sub-hourly and sub-kilometre scale. Our findings demonstrate the need to include measurements at leaf level to better understand the relations

Abstract. Marine particulate organic matter (POM) supports the vertical transport of organics in the oceans, and the ecology of microbes and filter feeders. POM is collected on GFF filters and quantified as particulate organic carbon (POC) and nitrogen (PON). The filtrate contains dissolved organic matter (DOM) that partly is abiotically converted into POM and can be collected on GFF filters. We filtered

Temperature appears to be the best predictor of species composition of planktonic foraminifera communities, making it possible to use their fossil assemblages to reconstruct sea surface temperature (SST) variation in the past. However, the role of other environmental factors potentially modulating the spatial and vertical distribution of planktonic foraminifera species is poorly understood. This is

In this paper, we quantify the CO2 and N2O emissions from denitrification over the Amazonian wetlands. The study concerns the entire Amazonian wetland ecosystem with a specific focus on three floodplain (FP) locations: the Branco FP, the Madeira FP and the FP alongside the Amazon River. We adapted a simple denitrification model to the case of tropical wetlands and forced it by open water surface extent

Anaerobic nitrate-dependent Fe(II) oxidation (NDFeO) is widespread in various aquatic environments and plays a major role in iron and nitrogen redox dynamics. However, evidence for truly enzymatic, autotrophic NDFeO remains limited, with alternative explanations involving the coupling of heterotrophic denitrification with the abiotic oxidation of structurally bound or aqueous Fe(II) by reactive intermediate

Light-use efficiency defines the ability of primary producers to convert sunlight energy to primary production and is computed as the ratio between the gross primary production and the intercepted photosynthetic active radiation. While this measure has been applied broadly within terrestrial ecology to investigate habitat resource-use efficiency, it remains underused within the aquatic realm. This

Gross primary productivity (GPP), the CO2 uptake by means of photosynthesis, cannot be measured directly on the ecosystem scale but has to be inferred from proxies or models. One newly emerged proxy is the trace gas carbonyl sulfide (COS). COS diffuses into plant leaves in a fashion very similar to CO2 but is generally not emitted by plants. Laboratory studies on leaf level gas exchange have shown

Abstract. Typhoons are assumed to stimulate ocean primary production through the upward mixing of nutrients into the surface ocean, based largely on observations of increased surface chlorophyll concentrations following the passage of typhoons. This surface chlorophyll enhancement, seen on occasion by satellites, more often is undetected due to intense cloud coverage. Daily data from a BGC-Argo profiling

Abstract. In Southeast Asia, oil palm plantations have largely replaced tropical forests. The impact of this shift in land-use on greenhouse gas (GHG) fluxes and soil microbial communities remains highly uncertain, mainly due to a relatively small pool of available data. The aim of this study is to quantify differences of nitrous oxide (N2O) and methane (CH4) fluxes as well as soil carbon dioxide (CO2)

Abstract. The North Atlantic north of 50° N is one of the most intense ocean sink areas for atmospheric CO2 considering the flux per unit area, 0.27 Pg-C yr−1, equivalent to −2.5 mol C m−2 yr−1. The Northwest Atlantic Ocean is a region with high anthropogenic carbon inventories. This is on account of processes which sustain CO2 air-sea fluxes, in particular strong seasonal winds, ocean heat loss, deep

Abstract. Wildfires typically affect multiple forest ecosystem services, with carbon sequestration being affected both directly, through the combustion of vegetation, litter and soil organic matter, and indirectly, through perturbation of the energy and matter balances. Post-fire carbon fluxes continue poorly studied at the ecosystem scale, especially during the initial window-of-disturbance when changes

In lakes, large amounts of methane are produced in anoxic sediments. Methane-oxidizing bacteria effectively convert this potent greenhouse gas into biomass and carbon dioxide. These bacteria are present throughout the water column, where methane concentrations can range from nanomolar to millimolar. In this study, we tested the hypothesis that methanotroph assemblages in a seasonally stratified freshwater

The coastal ocean is strongly affected by ocean acidification because of its shallow water depths, low volume, and the closeness to terrestrial dynamics. Earlier observations of dissolved inorganic carbon (DIC) and total alkalinity (TA) in the southern part of the North Sea, a northwest European shelf sea, revealed lower acidification effects than expected. It has been assumed that anaerobic degradation

Connections between vegetation and soil thermal dynamics are critical for estimating the vulnerability of permafrost to thaw with continued climate warming and vegetation changes. The interplay of complex biophysical processes results in a highly heterogeneous soil temperature distribution on small spatial scales. Moreover, the link between topsoil temperature and active layer thickness remains poorly

Abstract. Understanding controls on the persistence of soil organic matter (SOM) is essential to constrain its role in the carbon cycle and inform climate-carbon cycle model predictions. Emerging concepts regarding formation and turnover of SOM imply that it is mainly comprised of mineral-stabilized microbial products and residues, however, direct evidence in support of this concept remains limited

Abstract. Alpine grasslands sustain local economy providing fodder for livestock. Intensive fertilization is common to enhance their yields, thus creating negative externalities on water quality that are difficult to evaluate without reliable estimates of nutrient fluxes. We apply a 1-D mechanistic ecosystem model, seamlessly integrating land-surface energy balance, soil hydrology, vegetation dynamics

Abstract. The exchange of gaseous elemental mercury, Hg(0), between the atmosphere and terrestrial surfaces remains poorly understood mainly due to difficulties in measuring net Hg(0) fluxes on the ecosystem scale. Emerging evidence suggests foliar uptake of atmospheric Hg(0) to be a major deposition pathway to terrestrial surfaces. Here, we present a bottom-up approach to calculate Hg(0) uptake fluxes

Abstract. Foraminifera are unicellular organisms that play an important role in marine organic matter cycles. Some species are able to isolate chloroplasts from their algal food source and incorporate them as kleptoplasts into their own metabolic pathways, a phenomenon known as kleptoplastidy. One species showing this ability is Elphidium excavatum, a common foraminifer in the Kiel fjord, Germany.

Abstract. In Low Nutrient Low Chlorophyll areas, such as the Mediterranean Sea, atmospheric fluxes represent a considerable external source of nutrients likely supporting primary production especially during stratification periods. These areas are expected to expand in the future due to lower nutrient supply from sub-surface waters caused by enhanced stratification, likely further increasing the role

Abstract. Ocean acidification (OA), which is a major environmental change caused by increasing atmospheric CO2, has considerable influences on marine phytoplankton. But few studies have investigated interactions of OA and seasonal changes in temperature and photoperiod on marine diatoms. In the present study, a marine diatom Skeletonema costatum was cultured under two different CO2 levels (LC, 400

High-latitude oceans have been identified as particularly vulnerable to ocean acidification if anthropogenic CO2 emissions continue. Marine microbes are an essential part of the marine food web and are a critical link in biogeochemical processes in the ocean, such as the cycling of nutrients and carbon. Despite this, the response of Antarctic marine microbial communities to ocean acidification is poorly

Results from the fully and biogeochemically coupled simulations in which CO2 increases at a rate of 1 % yr−1 (1pctCO2) from its preindustrial value are analyzed to quantify the magnitude of carbon–concentration and carbon–climate feedback parameters which measure the response of ocean and terrestrial carbon pools to changes in atmospheric CO2 concentration and the resulting change in global

As the primary energy and carbon source in aquatic food webs, phytoplankton generally display spatial heterogeneity due to complicated biotic and abiotic controls; however our understanding of the causes of this spatial heterogeneity is challenging, as it involves multiple regulatory mechanisms. We applied a combination of field observation, numerical modeling, and remote sensing to display and interpret

Oceanic primary production forms the basis of the marine food web and provides a pathway for carbon sequestration. Despite its importance, spatial and temporal variations of primary production are poorly observed, in large part because the traditional measurement techniques are laborious and require the presence of a ship. More efficient methods are emerging that take advantage of miniaturized sensors

Emissions from land use and land cover change are a key component of the global carbon cycle. However, models are required to disentangle these emissions from the land carbon sink, as only the sum of both can be physically observed. Their assessment within the yearly community-wide effort known as the “Global Carbon Budget” remains a major difficulty, because it combines two lines of evidence that

The effects of global warming are most pronounced in winter. A reduction in snow cover due to warmer atmospheric temperature in formerly cold ecosystems, however, could counteract an increase in soil temperature by reduction of insulation. Thus, soil freeze–thaw cycles (FTCs) might increase in frequency and magnitude with warming, potentially leading to a disturbance of the soil biota and release

Biogeochemical ocean models are useful tools but subject to uncertainties arising from simplifications, inaccurate parameterization of processes, and poorly known model parameters. Parameter optimization is a standard method for addressing the latter but typically cannot constrain all biogeochemical parameters because of insufficient observations. Here we assess the trade-offs between satellite observations

Understanding the processes that influence and control carbon cycling in Arctic tundra ecosystems is essential for making accurate predictions about what role these ecosystems will play in potential future climate change scenarios. Particularly, air–surface fluxes of methane and carbon dioxide are of interest as recent observations suggest that the vast stores of soil carbon found in the Arctic tundra

To make predictions about the carbon cycling consequences of rising global surface temperatures, Earth system scientists rely on mathematical soil biogeochemical models (SBMs). However, it is not clear which models have better predictive accuracy, and a rigorous quantitative approach for comparing and validating the predictions has yet to be established. In this study, we present a Bayesian approach

Soil drying and wetting cycles promote carbon (C) release through large heterotrophic respiration pulses at rewetting, known as the “Birch” effect. Empirical evidence shows that drier conditions before rewetting and larger changes in soil moisture at rewetting cause larger respiration pulses. Because soil moisture varies in response to rainfall, these respiration pulses also depend on the random

Quantifying how vegetation phenology responds to climate variability is a key prerequisite to predicting how ecosystem dynamics will shift with climate change. So far, many studies have focused on responses of classical phenological events (e.g., budburst or flowering) to climatic variability for individual species. Comparatively little is known on the dynamics of physio-phenological events such as

The length of time that carbon remains in forest biomass is one of the largest uncertainties in the global carbon cycle, with both recent historical baselines and future responses to environmental change poorly constrained by available observations. In the absence of large-scale observations, models used for global assessments tend to fall back on simplified assumptions of the turnover rates of biomass