Oxygen is a critical resource that mediates a multitude of essential processes and interactions at multiple scales on coral reefs. In adult corals, it can directly or indirectly impact physiological processes, such as photosynthesis, respiration, and calcification. Moreover, many corals bleach as a consequence of being exposed to low oxygen. The sessile adult phase of corals makes habitat selection

Spur-and-groove (SAG) morphology characterizes the fore reef of many coral reefs worldwide. Although the existence and geometrical properties of SAG have been well documented, an understanding of the hydrodynamics over them is limited. Here, the three-dimensional flow patterns over SAG formations, and a sensitivity of those patterns to waves, currents, and SAG geometry were characterized using the

Here, we utilise a unique, 70-year-long (1949–2017), high-resolution historical aerial imagery dataset to track changes to coral reef structures in Bill’s Bay on the Ningaloo coast. Reef habitat was distinguished from sand and rubble substrates based on imagery greyscale values and autoclassified using unsupervised image analysis in ArcMap. This approach was validated through comparison of reef structure

Hawkfishes are small demersal reef predators. Although their association with the coral substrate has been widely documented for some species, information regarding their feeding habits is limited, especially in the Eastern Tropical Pacific (ETP). We characterized the diet of the coral hawkfish Cirrhitichthys oxycephalus in Isla Gorgona (ETP) by visually analyzing its gut contents and calculating its

Understanding the structural and mechanical properties of coral skeletons is important to assess their responses to natural and anthropogenic challenges and to predict the long-term viability of hermatypic corals in a changing ocean. Here, we describe the microstructure of the critically endangered staghorn coral (Acropora cervicornis) skeleton and its mechanical properties, spectral and fluidic behavior

Scleractinian corals provide habitats for a broad variety of cryptofauna, which in turn may contribute to the overall functioning of coral symbiomes. Among these invertebrates, hydrozoans belonging to the genus Zanclea represent an increasingly known and ecologically important group of coral symbionts. In this study, we analysed 321 Zanclea colonies associated with 31 coral genera collected from 11

The sclerosponge Ceratoporella nicholsoni is a hyper-calcifying high microbial abundance sponge. This sponge has been observed at high densities throughout the Caribbean in the mesophotic zone (30–150 m), as well as cryptic environments in shallow (< 30 m) depths. Given the densities of this sponge, it could play an important role in the cycling of inorganic and organic sources of carbon and nitrogen

Temporal patterns in giant barrel sponge (Xestospongia muta) spawning were compiled from 32 observations spanning 17 years and three Caribbean locations (Florida, Belize, and Haiti). The records were analyzed for patterns in seasonality, lunar periodicity, and diel rhythm to develop a predictive spawning window. Results indicate that spawning is concentrated from mid-April to late May. Most spawning

Efforts to study the microbial communities associated with corals can be limited by inefficiencies in the sequencing process due to high levels of host amplification by universal bacterial 16S rRNA gene primers. Here, we develop an inexpensive peptide nucleic acid (PNA) clamp that binds to a target sequence of host DNA during PCR and blocks amplification. We then test the ability of this PNA clamp

Marine habitats vary widely in structure, from incredibly complex coral reefs to simpler deep water and open ocean habitats. Hydromechanical models of swimming kinematics and microevolutionary studies suggest that these habitats select for different body shape characteristics. Fishes living in simple habitats are predicted to experience selection for energy-efficient sustained swimming, which can be

Soft corals are well known for producing toxic and unpalatable compounds to deter predation. In spite of these antipredation defences, a suite of specialised predators has coevolved to feed on soft corals. Direct quantification of this predation, however, has been minimal and the influence of predation on soft corals is yet to be investigated. In this study, the intensity and importance of predation

Variation in light and temperature can influence the genetic diversity and structure of marine plankton communities. While open-ocean plankton communities receive much scientific attention, little is known about how environmental variation affects plankton communities on tropical coral reefs. Here, we characterize eukaryotic plankton communities on coral reefs across the Bocas del Toro Archipelago

The crown-of-thorns starfish (COTS), Acanthaster cf. solaris, is one of the main contributors to declines in coral cover on the Great Barrier Reef (GBR) and remains one of the major acute disturbances on coral reefs throughout much of the Indo-Pacific. Extensive control programs on the GBR involve manual culling of COTS in the field, and research is needed to inform these management efforts. Data from

Coral recruitment is important in sustaining coral reef ecosystems and contributing to their recovery after disturbances. Despite widespread acceptance that crustose coralline algae (CCA) positively influence coral recruitment success, especially by enhancing coral settlement and early post-settlement stages, there are no experimental data on the effects of CCA species on late post-settlement survival

Azooxanthellate corals are the most abundant macrofossils in the lower Pliocene deposits of the Manilva Basin (S Spain). In this paper, the cnidarian fossil assemblages have been studied in order to reconstruct the original communities and to depict the seascapes. Benthic foraminiferal assemblages associated with the corals have also been analysed to infer the palaeoenvironmental conditions in which

Some reef corals form stable, dominant or codominant associations with multiple endosymbiotic dinoflagellate species (family Symbiodiniaceae). Given the immense genetic and physiological diversity within this family, Symbiodiniaceae community composition has the potential to impact the nutritional physiology and fitness of the cnidarian host and all associated symbionts. Here we assessed the impact

Coral polyps have a fluid-filled internal compartment, the gastrovascular cavity (GVC). Respiration and photosynthesis cause large daily excursions in GVC oxygen concentration (O2) and pH, but few studies have examined how this correlates with calcification rates. We hypothesized that GVC chemistry can mediate and ameliorate the effects of decreasing seawater pH (pHSW) on coral calcification. Microelectrodes

The status of coral reefs is often portrayed by parameters (e.g., coverage, bleaching, diseases, nutrients and rugosity) assigned to adult populations. Yet, coral recruitment is essential for sustaining coral populations, especially in the aftermath of major disturbances. Studying earliest coral recruitment at species level can reveal declines in the recovery potential and resilience of coral populations

Cleaning symbioses among coral reef fishes are highly variable. Cleanerfishes vary in how much they cooperate with (i.e. remove only ectoparasites) or cheat (i.e. bite healthy tissue, scales or mucus) on their fish clients. As a result, clients use various strategies to enforce cooperation by cleaners (e.g. punishment or partner choice), and cleaners use tactile stimulation to manipulate cheated client

Most benthic invertebrates, including ecosystem engineers such as corals, sponges and bivalves, have a motile planktonic larval phase and rely on specific chemical cues to identify a suitable substrate to settle. Crustose coralline algae (CCA) can induce settlement and metamorphosis responses in many invertebrates including corals. We tested the respective coral settlement capacity of multiple CCA

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Net calcification rates for coral reef and other calcifiers have been shown to decline as ocean acidification (OA) occurs. However, the role of calcium carbonate dissolution in lowering net calcification rates is unclear. The objective of this study was to distinguish OA effects on calcification and dissolution rates in dominant calcifying macroalgae of the Florida Reef Tract, including two rhodophytes

High-latitude coral reef communities have been postulated as the first areas to undergo reorganisation under climate change. Tropicalisation has been identified in some high-latitude communities and is predicted in others, but it is unclear how the resident benthic taxa are affected. We conducted a long-term (2007–2016) assessment of changes to benthic community cover in relation to thermal stress

Length–weight relationships (LWRs) are a fundamental tool for the non-intrusive determination of biomass, a unit of measure that facilitates the quantification of ecosystem and fisheries productivity. LWRs have been defined and broadly applied for many marine species across a range of ecosystems, especially regarding fishes. However, LWRs are yet to be determined for the majority of marine taxa, particularly

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Benthic suspension feeders have developed a variety of feeding strategies and food availability has often proven to be a key factor explaining their occurrence and distribution. The feeding biology of coral species has been the target of an increasing number of studies, however most of them focus on Scleractinia and Octocorallia, while information for Antipatharia is very scarce. The present study

Coral reef communities exposed to rapid temperature rises and frequent thermal anomalies were evaluated for taxonomic turnover via presence/absence information over a 27-year period experiencing large changes in the dominant taxa. Temporal turnover of the taxa within sites was consistently high (~ 40%) due to both inter-annual episodic and directional changes. Turnover with time displayed a rapid increase

Sea surface temperatures (SST) and chlorophyll a concentrations (Chl a) in the southern Red Sea have wide variations based on distance from the coast. To understand how these variations can affect the diversity of symbionts hosted by reef-associated organisms, we conducted a study in the central and southern Red Sea to examine the diversity of Symbiodiniaceae hosted by the zooxanthellate zoantharian

Crown-of-thorns starfish (COTS) outbreaks are a globally significant driver of coral mortality in the Indo-Pacific and work synergistically with other disturbances. We argue that our improved understanding of COTS ecology and ability to monitor their populations, combined with new efficiencies in COTS control technologies, provides a sound basis for attempting to suppress COTS outbreaks on the GBR

Most laboratory experiments examining the effect of ocean acidification on marine organisms use stable pH/pCO2 treatments based on average projections for the open ocean. However, pH/pCO2 levels vary spatially and temporally in marine environments, and this variation can affect organism responses to pH/pCO2. On coral reefs, diel pH/pCO2 variability at the individual reef scale has been reported in

Molecular cytogenetic investigation was carried out on the scleractinian coral, Acropora pruinosa (A. pruinosa). Conventional Giemsa staining techniques for karyotyping, such as G- and C-banding, were conducted. Karyotype analysis showed mosaicism of cells with two different chromosome numbers, 28 and 29, in the same embryo. The C-band positive portions appeared on the centromeres of most chromosomes

Although sea snakes are important predators in coral reef ecosystems and have undergone substantial population declines in some areas, we have little robust information on life histories of these animals. Based on a 17-yr mark–recapture study of turtle-headed sea snakes (Emydocephalus annulatus) in New Caledonia (> 1200 individuals marked), we can confidently allocate ages to 539 individuals (1–11 yr

Anthropogenic ocean acidification (OA) is a threat to coral reef fishes, but few studies have investigated responses of high-trophic-level predators, including sharks. We tested the effects of 72-hr exposure to OA-relevant elevated partial pressures of carbon dioxide (pCO2) on oxygen uptake rates, acid–base status, and haematology of newborn tropical blacktip reef sharks (Carcharhinus melanopterus)

Global warming is leading to range shifts of marine species, threatening the structure and functioning of ecological communities and human populations that rely on them. The largest changes are seen in biogeographic transition zones, such as subtropical reef communities, where species range shifts are already causing substantial community reorganisation. This causes functional changes in communities

Knowledge of water clarity is an essential component of coral reef ecology. While qualitative trends are well known, there are currently few published records of spectral—varying as a (relatively) continuous function of wavelength—water optical properties for these systems. The purpose of this study is to quantify trends in the range and variability of the spectral diffuse attenuation coefficient (Kd)

Coral reefs provide major nutritional inputs to humans through fish production. Yet, our capacity to adequately assess fish productivity in these and other high-diversity aquatic systems is hampered by a lack of computationally accessible methods with realistic data requirements. Standing stock biomass is often assumed to reflect biomass productivity, yet theoretical and empirical evidence question

Due to their complexity, coral reefs are difficult to study especially when considering the role that the interplay between the terrestrial and marine environments has in shaping distribution of marine, terrestrial, and amphibious species. Many organisms live in remote areas of the ocean and inhabit both terrestrial and marine environments. Such amphibious lifestyle poses analytical difficulties due

The photosymbiosis of tropical giant clams (subfamily Tridacninae) with unicellular algae (Symbiodiniaceae) restricts their distribution to the sunlit, shallow waters of the euphotic zone where organisms are additionally exposed to potentially damaging levels of solar UV radiation. Metabolic and physiological responses of Red Sea Tridacna maxima clams, including net calcification and primary production

Coral reefs are undergoing degradation due to overexploitation, pollution, and climate change. Management and restoration efforts require that we gain a better understanding of the complex interactions between corals, their microbiomes, and their environment. For this purpose, Varadero Reef near Cartagena, Colombia, serves as an informative study system located at the entrance of the Bay of Cartagena

The coastal waters of Singapore support coral reefs that are biodiverse but characterized by high turbidity and sedimentation. Here, we used internal transcribed spacer two (ITS2) amplicon sequencing to investigate the Symbiodiniaceae communities associated with this marginal reef system, as turbid reefs may serve as potential refugia from future thermal stress. Using the analytical framework SymPortal

Climate change affects the ecology of reef fish through changing their habitat, community and their feeding and territorial behavior. The corals and their associated reef fish in the Persian Gulf as the world’s warmest sea suffer from the increasing frequency and severity of mass bleaching events. Yet, the effects of climate-induced coral bleaching events on reef fish in this sea are poorly understood

Coral reefs are one of the most biodiverse and economically important ecosystems in the world, but they are rapidly degrading due to the effects of global climate change and local anthropogenic stressors. Reef scientists are increasingly studying coral reefs that occur in marginal and extreme environments to understand how organisms respond to, and cope with, environmental stress, and to gain insight

The ecology of phototrophic corals in the lower photic zone remains poorly understood. Studies to date indicate that growth rates generally decrease as available light attenuates with depth and are very slow at depths > 40 m. Here, we provide detailed evidence for moderate growth for obligate zooxanthellate corals at extreme depths. Using reliable U–Th dating techniques, Leptoseris spp. from 70 to

Parrotfishes (Scarini) are considered key agents in coral reef health and recovery, but the drivers of parrotfish–coral dynamics remain contentious. The prevailing view of parrotfishes as ecosystem engineers is based on the perceived removal of algal turf, macroalgae and sediment, but these are effects of feeding, not causes. The recent proposal that most parrotfishes are ‘microphages’ that target

Sharks play important functional roles in coral reef ecosystems. Studying reef shark populations’ spatial ecology also contributes important data for effective conservation planning. The purpose of this study was to define the home range of neonatal blacktip reef sharks (Carcharhinus melanopterus) around Moorea, French Polynesia, and compare estimates using both mark-recapture surveys and active acoustic

Increasing abundance of arborescent octocorals (often referred to as gorgonians) on Caribbean reefs raises the question of whether habitat structure provided by octocorals can mediate a transition between coral- and algal- dominated states by increasing fish abundance and herbivory. This study tested the hypotheses that feeding rates and densities of demersal reef fishes are affected by the habitat

Palau suffered massive mortality of reef corals during the 1998 mass bleaching, and understanding recovery from that catastrophic loss is critical to management for future impacts. Many reef species have shown significant genetic structure at small scales while apparently absent at large scales, a pattern often referred to as chaotic genetic patchiness. Here we use hierarchical sampling of population

Scleractinian corals, which create complex three-dimensional carbonate structures, are the foundation of coral reef ecosystems. There are a variety of coral growth forms or ‘morphologies’ that have distinct advantages and disadvantages when corals compete for space and light, and when they are exposed to hydrodynamic disturbances. We developed a novel three-dimensional functional-structural model,

Reef-building corals living in extreme environments can provide insight into the negative effects of future climate scenarios. In hot environments, coral communities experience disproportionate thermal stress as they live very near or at their upper thermal limits. This results in a high frequency of bleaching episodes, but it is unknown whether temperature-driven outbreaks of coral disease follow

The potential of increased bioerosion by excavating sponges in future environmental scenarios represents a potential threat to coral reef structure and function. Little is known about prokaryotic associations in excavating sponges despite the fact that evidence indicates they contribute to the sponge growth through their heterotrophic metabolism and may even act as microborers. Here, we provide the

A growing number of studies have provided insights into the diversity of coral-associated bacteria and their function in the coral holobiont. Yet, information about spatial heterogeneity of bacteria within coral colonies is limited. Using 16S rRNA gene metabarcoding, we analyzed the bacterial community composition across four distinct locations in each of five wild Acropora loripes colonies. Considerable

Coral ecosystems in the central Mexican Pacific inhabit environmental conditions considered as suboptimal for reef development, such as wide ranges in temperature, low pH, and cyclonic activity. In addition, they are facing increasing nutrient and sediment inputs as a consequence of urban growth and tourism. While the global effects of anthropogenic stressors to coral communities have been described

Some massive coral core slices reveal luminescent bands under ultraviolet light, which have been attributed to terrestrial humic acids in the skeleton. Coral luminescence has therefore been used to reconstruct past climate and hydrological variability. However, it has remained unresolved how closely coral luminescence at sub-annual resolution is related to terrestrial humic acid concentrations. This

Scleractinian corals often reproduce in synchronized spawning events to maximize gamete fertilization and coral larval production. The extent of spawning synchrony and its timing vary among coral taxa and among biogeographic regions. Information is, however, limited, especially for equatorial reefs, hindering the identification of environmental cues that influence gametogenic cycles and spawning. To

In this paper, we investigated the age distribution and dynamics of polyps in the slow-growing and long-lived gorgonian Corallium rubrum (the Mediterranean red coral), applying an a posteriori demographic approach by considering each colony as a population of polyps. In the Mediterranean red coral, new polyps emerge from the coenenchyme in different regions of the colony and their budding rate depends

Increased ocean temperatures from anthropogenic climate change induce coral bleaching, the breakdown of symbioses between corals and photosynthetic dinoflagellates. However, some corals thrive in marginal, warm environments that exceed typical bleaching thresholds. Their survival may be mediated by specific genes within the coral host, association with heat-tolerant algal symbionts, and/or distinct

Coral reefs are of global concern in the face of increasing anthropogenic disturbance. Much research has focused on the negative factors associated with coral reef decline, but few have documented the positive factors in relation to recovering coral reefs. Here, we report a positive quantitative association between sea urchins (diadematids), coral recruitment and coral recovery, recorded along Taiwanese

Globally, many coral reefs have fallen into negative carbonate budget states, where biological erosion exceeds carbonate production. The compounding effects of urbanization and climate change have caused reductions in coral cover and shifts in community composition that may limit the ability of reefs to maintain rates of vertical accretion in line with rising sea levels. Here we report on coral reef

Scleractinian corals provide the three-dimensional structure and function of coral reefs around the globe. These sessile animals are subject to physical injuries from a variety of sources and can completely regenerate damaged tissue as a survival mechanism; however, tissue regeneration rates vary widely within and across taxa. To explore the intraspecific differences in tissue regeneration, circular

There is increasing evidence that non-reef habitats in the seascape surrounding coral reefs are widely used by reef-associated fishes. However, our understanding of seascape use in the Indo-Pacific region is incomplete due to its large geographical range and as a consequence, considerable environmental variation (e.g. tidal regimes). We used remote video cameras to survey reef-associated fishes within