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Contemporary aquaculture: implications for human nutrition Curr. Opin. Biotech. (IF 8.288) Pub Date : 2021-01-11 Kathryn J Fiorella; Harriet Okronipa; Katherine Baker; Sebastian Heilpern
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Ketogenic regimens for acute neurotraumatic events Curr. Opin. Biotech. (IF 8.288) Pub Date : 2021-01-11 Ceren Yarar-Fisher; Jia Li; Erika D Womack; Amal Alharbi; Oscar Seira; Kathleen L Kolehmainen; Ward T Plunet; Nima Alaeiilkhchi; Wolfram Tetzlaff
Dietary modification would be the most translatable, cost-efficient, and, likely, the safest approach available that can reduce the reliance on pharmaceutical treatments for treating acute or chronic neurological disorders. A wide variety of evidence suggests that the ketogenic diet (KD) could have beneficial effects in acute traumatic events, such as spinal cord injury and traumatic brain injury.
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Advancing mechanistic understanding and bioengineering of probiotic lactobacilli and bifidobacteria by genome editing Curr. Opin. Biotech. (IF 8.288) Pub Date : 2021-01-11 Fanglei Zuo; Harold Marcotte
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Beyond calorie restriction: aging as a biological target for nutrient therapies Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-12-23 Steven N Austad; Jessica M Hoffman
Arguably, the most important discovery in the biology of aging to date was that simply reducing food intake extended life and improved many aspects of health in a diversity of animal species. The conventional wisdom that emerged from first 50 years of rodent food restriction studies included (1) that the longevity impact of restriction was greater the longer restriction was imposed, and (2) that restricting
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Food value chain interventions and nutritional outcomes: a review of evidence and recommendations for future assessments Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-12-23 Charles F Nicholson; Eva Monterrosa; James L Garrett
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Ultrasonographic features of ovarian morphology capture nutritional and metabolic influences on the reproductive axis: implications for biomarker development in ovulatory disorders Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-11-25 Heidi Vanden Brink; Jeffrey Pea; Marla E Lujan
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Engineered diets to improve cancer outcomes Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-11-21 Marcus D Goncalves; Oliver DK Maddocks
Cancer cells acquire a diverse range of metabolic adaptations that support their enhanced rates of growth and proliferation. While these adaptations help tune metabolism to support higher anabolic output and bolster antioxidant defenses, they can also decrease metabolic flexibility and increase dependence on nutrient uptake versus de novo synthesis. Diet is the major source of nutrients that ultimately
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Fermented food products in the era of globalization: tradition meets biotechnology innovations Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-11-21 Andrea Galimberti; Antonia Bruno; Giulia Agostinetto; Maurizio Casiraghi; Lorenzo Guzzetti; Massimo Labra
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Towards superior plant-based foods using metabolomics Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-10-18 Doris M Jacobs; Marco A van den Berg; Robert D Hall
Metabolomics is proving a useful approach for many of the main future goals in agronomy and food production such as sustainability/crop resilience, food quality, safety, storage, and nutrition. Targeted and/or untargeted small-molecule analysis, coupled to chemometric analysis, has already unveiled a great deal of the complexity of plant-based foods, but there is still ‘dark matter’ to be discovered
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Computational approaches to understanding nutrient metabolism and metabolic disorders Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-10-07 Corrado Priami
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The potential of remote sensing and artificial intelligence as tools to improve the resilience of agriculture production systems Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-10-07 Jinha Jung; Murilo Maeda; Anjin Chang; Mahendra Bhandari; Akash Ashapure; Juan Landivar-Bowles
Modern agriculture and food production systems are facing increasing pressures from climate change, land and water availability, and, more recently, a pandemic. These factors are threatening the environmental and economic sustainability of current and future food supply systems. Scientific and technological innovations are needed more than ever to secure enough food for a fast-growing global population
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Circadian rhythms and meal timing: impact on energy balance and body weight Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-29 Hedda L Boege; Mehreen Z Bhatti; Marie-Pierre St-Onge
Energy metabolism and appetite regulating hormones follow circadian rhythms which, when disrupted, could lead to adverse metabolic consequences. Such circadian misalignment, a mismatch between endogenous circadian rhythms and behavior, is most severely experienced by shift workers, due to nighttime wake, daytime sleep, and eating at night. However, circadian misalignment is not restricted to shift
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Intelligent cell-based therapies for cancer and autoimmune disorders. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-18 Rui Chen,Ji Jing,Stefan Siwko,Yun Huang,Yubin Zhou
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Engineering natural and noncanonical nicotinamide cofactor-dependent enzymes: design principles and technology development. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-18 Edward King,Sarah Maxel,Han Li
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Transporter engineering in microbial cell factories: the ins, the outs, and the in-betweens. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-12 Steven A van der Hoek,Irina Borodina
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Optogenetics and biosensors set the stage for metabolic cybergenetics. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-11 César Carrasco-López,Sergio A García-Echauri,Therese Kichuk,José L Avalos
Cybergenetic systems use computer interfaces to enable feed-back controls over biological processes in real time. The complex and dynamic nature of cellular metabolism makes cybergenetics attractive for controlling engineered metabolic pathways in microbial fermentations. Cybergenetics would not only create new avenues of research into cellular metabolism, it would also enable unprecedented strategies
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Editorial overview: Chemical biotechnology. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-11 Christoph Wittmann,Sang Yup Lee
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Editorial overview: Pharmaceutical biotechnology: new frontiers in cancer immunotherapy. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-08 Lana E Kandalaft,Michele Graciotti
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Increasing metabolic pathway flux by using machine learning models. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-04 Kang Zhou,Wenfa Ng,Yoel Cortés-Peña,Xiaonan Wang
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High versus low dose irradiation for tumor immune reprogramming. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-01 Maria Ochoa de Olza,Jean Bourhis,Melita Irving,George Coukos,Fernanda G Herrera
Local administration of ionizing radiation to tumors can promote anticancer immune responses that lead to the abscopal regression of distant metastases, especially in patients receiving systemic immune-checkpoint inhibitors. Growing preclinical evidence indicates that high-dose irradiation administered locally to destroy malignant lesions, can promote the release of danger-associated molecular patterns
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T-cell repertoire analysis and metrics of diversity and clonality. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-09-01 Johanna Chiffelle,Raphael Genolet,Marta As Perez,George Coukos,Vincent Zoete,Alexandre Harari
The recent developments of high-throughput bulk and single-cell sequencing technologies accelerated the understanding of the complexity of immune repertoire dynamics combined to transcriptomics. Also, profiling of cellular repertoires in health or disease requires statistical metrics to capture clonal diversity characterized by clones frequency, repertoire richness and convergence. Here we present
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Insect sex pheromone production in yeasts and plants. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-28 Karolis Petkevicius,Christer Löfstedt,Irina Borodina
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Metabolic engineering strategies to overcome precursor limitations in isoprenoid biosynthesis. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-24 Yuexuan Zu,Kristala Lj Prather,Gregory Stephanopoulos
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Yeast chromosomal engineering to improve industrially-relevant phenotypes. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-18 Jin Jin,Bin Jia,Ying-Jin Yuan
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Control strategies to manage trade-offs during microbial production. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-15 Yichao Han,Fuzhong Zhang
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Controlling metabolic flux by toehold-mediated strand displacement. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-13 Rebecca P Chen,Victoria M Hunt,Alexander A Mitkas,Ka-Hei Siu,Wilfred Chen
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Engineering long-circulating nanomaterial delivery systems. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-12 Zhiyuan Fan,Pu Zhu,Yucheng Zhu,Kevin Wu,Christopher Y Li,Hao Cheng
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A roadmap to engineering antiviral natural products synthesis in microbes. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-12 Jingbo Ma,Yang Gu,Peng Xu
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Heterologous biosynthesis as a platform for producing new generation natural products. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-09 Dongwon Park,Girish Swayambhu,Blaine A Pfeifer
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Engineering nanoparticulate vaccines for enhancing antigen cross-presentation. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-01 Guangsheng Du,Xun Sun
Efficient cross-presentation is pivotal for vaccination against cancer and infection by intracellular virus and bacteria. Recently, various types of nanoparticle vaccines have been developed and investigated for efficiently and specifically improving cross-presentation and CD8+ T cell priming. In this review, we will summarize the known intracellular pathways involved in cross-presentation, and focus
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Editorial overview: Analytical biotechnology in the era of high-performance omics, synthetic biology, and machine learning. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-08-01 Yinjie J Tang,Ludmilla Aristilde
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Chassis engineering for microbial production of chemicals: from natural microbes to synthetic organisms. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-29 Jingyi Liu,Xia Wu,Mingdong Yao,Wenhai Xiao,Jian Zha
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Unlocking nature's biosynthetic potential by directed genome evolution. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-26 Mingfeng Cao,Vinh G Tran,Huimin Zhao
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Mechanogenetics for cellular engineering and cancer immunotherapy. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-24 Linshan Zhu,Yiqian Wu,Chi Woo Yoon,Yingxiao Wang
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Advances in microphysiological blood-brain barrier (BBB) models towards drug delivery. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-22 Caleb S Lee,Kam W Leong
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A guide to deciphering microbial interactions and metabolic fluxes in microbiome communities. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-22 Maciek R Antoniewicz
Microbiomes occupy nearly all environments on Earth. These communities of interacting microorganisms are highly complex, dynamic biological systems that impact and reshape the molecular composition of their habitats by performing complex biochemical transformations. The structure and function of microbiomes are influenced by local environmental stimuli and spatiotemporal changes. In order to control
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Employment of targeted nanoparticles for imaging of cellular processes in cardiovascular disease. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-15 Mallika Modak,Molly A Frey,Sijia Yi,Yugang Liu,Evan A Scott
Cardiovascular disease (CVD) is a leading cause of global mortality, accounting for pathologies that are primarily of atherosclerotic origin and driven by specific cell populations. A need exists for effective, non-invasive methods to assess the risk of potentially fatal major adverse cardiovascular events (MACE) before occurrence and to monitor post-interventional outcomes such as tissue regeneration
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Recent advances in improving metabolic robustness of microbial cell factories. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-16 Tian Jiang,Chenyi Li,Yuxi Teng,Ruihua Zhang,Yajun Yan
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Advances in single cell Raman spectroscopy technologies for biological and environmental applications. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-17 Dongqi Wang,Peisheng He,Zijian Wang,Guangyu Li,Nehreen Majed,April Z Gu
The increasing sophistication of single cell Raman spectroscopy (SCRS) via its integrations with other advanced analytical techniques and modern data analytics, enable unprecedented exploration of complex biological and environmental samples with significantly improved specificity, sensitivity, and resolution. Because of the merits of being high-resolution, label-free, non-invasive, molecular-specific
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Engineering immunogenic cell death with nanosized drug delivery systems improving cancer immunotherapy. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-13 Wenlu Yan,Tianqun Lang,Xianrong Qi,Yaping Li
Many anti-cancer therapies can induce or enhance the immunogenic cell death (ICD), a process that releases damage-associated molecular patterns (DAMPs) to prime antigen processing and presentation necessary for successful cancer immunotherapy. However, the clinical potential of these therapies, especially the chemotherapy, is limited by serious systemic side effects, because of their non-specific accumulation
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Metabolic engineering for production of functional polysaccharides. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-13 Christoph Schilling,Abinaya Badri,Volker Sieber,Mattheos Koffas,Jochen Schmid
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Bioengineered pluripotent stem cell models: new approaches to explore early human embryo development. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-13 Agnes M Resto Irizarry,Sajedeh Nasr Esfahani,Jianping Fu
Human development is a complex process in which environmental signals and factors encoded by the genome interact to engender cell fate changes and self-organization that drive the progressive formation of the human body. Herein, we discuss engineered biomimetic platforms with controllable environments that are being used to develop human pluripotent stem cell (hPSC)-based embryo models (or embryoids)
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Enzymatic control of product distribution in terpene synthases: insights from multiscale simulations. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-14 Keren Raz,Shani Levi,Prashant Kumar Gupta,Dan Thomas Major
In this opinion, we review some recent work on terpene biosynthesis using multiscale simulation approaches, with special focus on contributions from our group. Terpene synthases generate terpenes employing rich carbocation chemistry, including highly specific ring formations, proton, hydride, methyl, and methylene migrations, followed by reaction quenching. In these enzymes, the main catalytic challenge
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Combining protein and metabolic engineering to construct efficient microbial cell factories. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-12 Ning Xu,Yuwan Liu,Huifeng Jiang,Jun Liu,Yanhe Ma
Microbial cell factories offer great opportunities for the feasible biosynthesis of various value-added products from renewable resources. In recent years, protein engineering has served as a powerful approach for generating enzymes or proteins with desirable properties. As an effective toolbox, many efforts have been employed into protein engineering for the improvement of biological networks by enhancing
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Challenges and advantages of cell therapy manufacturing under Good Manufacturing Practices within the hospital setting. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-11 Emanuela M Iancu,Lana E Kandalaft
Academic medicine serves to advance the scientific field and provide the highest quality of clinical care. This applies to cancer where there is a continuous unmet need for innovation. In the last decade, we have observed a significant development of commercial cell and gene-therapy products with a rapid growth of the industry. Hospital-based Good Manufacturing Practice (GMP) facilities which support
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Advances in G protein-coupled receptor high-throughput screening. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-07-10 Emily A Yasi,Nicholas S Kruyer,Pamela Peralta-Yahya
G protein-coupled receptors (GPCRs) detect compounds on the cell surface and are the starting point of a number of medically relevant signaling cascades. Indeed, over 30% of FDA approved drugs target GPCRs, making them a primary target for drug discovery. Computational and experimental high-throughput screening (HTS) approaches of clinically relevant GPCRs are a first-line drug discovery effort in
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Organoid technology and applications in cancer immunotherapy and precision medicine. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-27 Krisztian Homicsko
Tumors are complex ecosystems of multiple cell types in addition to cancer cells. The response to therapies can be shaped by not only cancer cell vulnerabilities but also by the cells of the tumor microenvironment (TME). For cellular immune therapies, cancer cells are the direct target, but for most of the immune checkpoint blockades (ICB), the direct therapeutic targets are the immune cells. Current
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Toward a systematic design of smart probiotics. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-27 Ruhi Choudhary,Radhakrishnan Mahadevan
Synthetic biology has been instrumental in turning microbes into cell-factories capable of diverse processes. A recent application has been to convert them into living therapeutics with diagnostic and production capabilities. These smart probiotics act as living medicines inside the body capable of diagnosing and responding to environmental cues in real time. Many companies and research groups have
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Challenges and opportunities with CRISPR activation in bacteria for data-driven metabolic engineering. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-27 Jason Fontana,David Sparkman-Yager,Jesse G Zalatan,James M Carothers
Creating CRISPR gene activation (CRISPRa) technologies in industrially promising bacteria could be transformative for accelerating data-driven metabolic engineering and strain design. CRISPRa has been widely used in eukaryotes, but applications in bacterial systems have remained limited. Recent work shows that multiple features of bacterial promoters impose stringent requirements on CRISPRa-mediated
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Engineering microbial cell morphology and membrane homeostasis toward industrial applications. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-20 Liang Guo,Zixuan Pang,Cong Gao,Xiulai Chen,Liming Liu
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Bacterial metabolic heterogeneity: origins and applications in engineering and infectious disease. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-20 Trent D Evans,Fuzhong Zhang
Bacteria within an isoclonal population display significant heterogeneity in metabolism, even under tightly controlled environmental conditions. Metabolic heterogeneity enables influential functions not possible or measurable at the ensemble scale. Several molecular and cellular mechanisms are likely to give rise to metabolic heterogeneity including molecular noise in metabolic enzyme expression, positive
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Engineering microbial diagnostics and therapeutics with smart control. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-18 Matthew B Amrofell,Austin G Rottinghaus,Tae Seok Moon
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Genetically-encoded biosensors for analyzing and controlling cellular process in yeast. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-18 Monireh Marsafari,Jingbo Ma,Mattheos Koffas,Peng Xu
Yeast has been a robust platform to manufacture a broad range of biofuels, commodity chemicals, natural products and pharmaceuticals. The membrane-bound organelles in yeast provide us the means to access the specialized metabolism for various biosynthetic applications. The separation and compartmentalization of genetic and metabolic events presents us the opportunity to precisely control and program
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Gene delivery for immunoengineering. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-15 Sarah Y Neshat,Stephany Y Tzeng,Jordan J Green
A growing number of gene delivery strategies are being employed for immunoengineering in applications ranging from infectious disease prevention to cancer therapy. Viral vectors tend to have high gene transfer capability but may be hampered by complications related to their intrinsic immunogenicity. Non-viral methods of gene delivery, including polymeric, lipid-based, and inorganic nanoparticles as
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Engineered bacterial microcompartments: apps for programming metabolism. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-15 Cheryl A Kerfeld,Markus Sutter
Bacterial Microcompartments (BMCs) are used by diverse bacteria to compartmentalize enzymatic reactions, functioning analogously to the organelles of eukaryotes. The bounding membrane and encapsulated components are composed entirely of protein, which makes them ideal targets for modification by genetic engineering. In contrast to viruses, in which generally only one protein forms the capsid, the shells
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Editorial Overview: Nanobiotechnology. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-01 Beatrix Suess,Thomas Hermann
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Engineering of natural product biosynthesis in Pseudomonas putida. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-06-01 Anita Loeschcke,Stephan Thies
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Synthetic biology for protein-based materials. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-05-31 Zhi-Gang Qian,Fang Pan,Xiao-Xia Xia
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Flux controlling technology for central carbon metabolism for efficient microbial bio-production. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-05-30 Yoshihiro Toya,Hiroshi Shimizu
Syntheses of many commodities that are produced using microorganisms require cofactors such as ATP and NAD(P)H. Thus, optimization of the flux distribution in central carbon metabolism, which plays a key role in cofactor regeneration, is critical for enhancing the production of the target compounds. Since the intracellular and extracellular conditions change over time in the fermentation process, dynamic
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Multi-scale data-driven engineering for biosynthetic titer improvement. Curr. Opin. Biotech. (IF 8.288) Pub Date : 2020-05-30 Zhixing Cao,Jiaming Yu,Weishan Wang,Hongzhong Lu,Xuekui Xia,Hui Xu,Xiuliang Yang,Lianqun Bao,Qing Zhang,Huifeng Wang,Siliang Zhang,Lixin Zhang
Industrial biosynthesis is a very complex process which depends on a range of different factors, from intracellular genes and metabolites, to extracellular culturing conditions and bioreactor engineering. The identification of species that improve the titer of some reaction is akin to the task of finding a needle in a haystack. This review aims to summarize state-of-the-art biosynthesis titer improvement