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Comprehensive genome-wide analyses of R2R3-MYB transcription factors and tolerance to drought stress in Populus davidiana × Populus bolleana Tree Genet. Genomes (IF 2.4) Pub Date : 2024-03-02
Abstract The MYB family is one of the largest families of transcription factors, in which the R2R3-MYB subgroup plays a crucial role in various biological processes. R2R3-MYBs in Populus davidiana × Populus bolleana have, however, not been systematically investigated. Here, based on the gene annotation of P. davidiana × P. bolleana genome sequence, all PdbR2R3-MYB transcripts were identified. These
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Analysis of genetic parameters of growth and wood traits provides insight into the genetic improvement of Schima superba Tree Genet. Genomes (IF 2.4) Pub Date : 2024-03-01
Abstract Schima superba (Theaceae) is widely distributed in subtropical China, and is the main timber and ecological afforestation tree species. This study aimed to provide a practical basis for the genetic improvement of wood traits of Schima superba. Herein, 10-year-old, half-sib families S. superba trees were used to reveal the genetic variation and control of growth traits and wood traits, as well
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DNA-(cytosine-C5) methyltransferases and demethylases in Theobroma cacao: insights into genomic features, phylogenetic relationships, and protein–protein interactions Tree Genet. Genomes (IF 2.4) Pub Date : 2024-02-14
Abstract DNA methylation is an important epigenetic mark that plays a crucial role in regulating various biological processes and adaptation to environmental conditions in both plants and animals. At present, there are no reports on the systematic analysis of the DNA-(cytosine-5) methyltransferase (C5-MTase) and demethylase (dMTase) gene families from the cacao (Theobroma cacao) genome. In this study
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Mating system and inbreeding depression in Hymenaea stigonocarpa Tree Genet. Genomes (IF 2.4) Pub Date : 2024-01-30
Abstract In tree species, inbreeding due to selfing or biparental mating may decrease offspring adaptation and growth due to inbreeding depression (ID). Degenerative effects of ID, mainly reduction in productivity and survival, are undesirable for ex-situ conservation, improvement, and environmental and commercial reforestation of tree species. The effects of ID resulting from self-fertilization and
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Genetic diversity and population structure in Quercus suber L. revealed by nuclear microsatellite markers and generation of a core collection Tree Genet. Genomes (IF 2.4) Pub Date : 2024-01-27 Fatima Ezzahra Assemar, Mohammed Alami, Karim Rabeh, Leila Medraoui, Salwa El Antri, Abdelkarim Filali-Maltouf, Bouchra Belkadi
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Insights into the evolution of the eucalypt CER1 and CER3 genes involved in the synthesis of alkane waxes Tree Genet. Genomes (IF 2.4) Pub Date : 2024-01-15 Mariano A. Hernández, René E. Vaillancourt, Brad M. Potts, Jakob B. Butler
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Enviromic prediction enables the characterization and mapping of Eucalyptus globulus Labill breeding zones Tree Genet. Genomes (IF 2.4) Pub Date : 2024-01-08 Andrew N. Callister, Germano Costa-Neto, Ben P. Bradshaw, Stephen Elms, Jose Crossa, Jeremy T. Brawner
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Population genetic structure and demographic history of the timber tree Dicorynia guianensis in French Guiana Tree Genet. Genomes (IF 2.4) Pub Date : 2023-12-26 Julien Bonnier, Niklas Tysklind, Valérie Troispoux, Ivan Scotti, Stéphanie Barthe, Olivier Brunaux, Stéphane Guitet, Stéphane Traissac, Myriam Heuertz
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Preserving genetic diversity in Pinus tabuliformis breeding population through core collection development Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-28 Boning Yang, Huili Wang, Qijing Xia, Yousry A. El-Kassaby, Wei Li
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Genetic analysis of quantitative variation in almond nut traits Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-20 Shashi N. Goonetilleke, Michelle G. Wirthensohn, Diane E. Mather
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An improved reference genome and first organelle genomes of Quercus suber Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-18 Ana Usié, Octávio Serra, Pedro M. Barros, Pedro Barbosa, Célia Leão, Tiago Capote, Tânia Almeida, Leandra Rodrigues, Isabel Carrasquinho, Joana B. Guimarães, Diogo Mendoça, Filomena Nóbrega, Conceição Egas, Inês Chaves, Isabel A. Abreu, Nelson J. M. Saibo, Liliana Marum, Maria Carolina Varela, José Matos, Fernanda Simões, Célia M. Miguel, M. Margarida Oliveira, Cândido P. Ricardo, Sónia Gonçalves,
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Additive and non-additive genetic variance in juvenile Sitka spruce (Picea sitchensis Bong. Carr) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-08 J.J. Ilska, D.J. Tolhurst, H. Tumas, J. P. Maclean, J. Cottrell, S.J. Lee, J. Mackay, J.A. Woolliams
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Full-scale genetic pattern and environmental association of Actinidia chinensis populations across ten mountain systems in China, and its significance for conservation Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-06 Xue-Mei Lu, Yan-Chang Wang, Chuang Liu, Li Liao, Yongbo Liu, Jian-Wen Zhang, Cai-Hong Zhong, Zuo-Zhou Li
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Genome-wide identification of NRAMP family genes in Populus trichocarpa and their roles in transport of heavy metals Tree Genet. Genomes (IF 2.4) Pub Date : 2023-11-01 Siqin Liu, Tao Long, Zihao Chen, Jikai Liu, Wenli Cui, Haiqin Leng, Yuhang Xing, Lucas Gutierrez Rodriguez, Víctor Resco de Dios, Yongfeng Gao, Yinan Yao
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Identification and marker development of a moderate-effect fire blight resistance QTL in M. sieversii, the primary progenitor of domesticated apples Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-23 Richard Tegtmeier, Della Cobb-Smith, Gan-Yuan Zhong, Awais Khan
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Preliminary estimates of genetic parameters and familial selection for non-native poplars show good potential for genetic gains on growth, cold hardiness, trunk quality and Sphaerulina musiva susceptibility Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-19 Guillaume Otis-Prud’homme, Josianne DeBlois, Martin Perron
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Genetic variation and origin of mountain birch on a recently colonized glacial outwash plain by Vatnajökull glacier, southeast Iceland Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-16 Snæbjörn Pálsson, Þóra Ellen Þórhallsdóttir, Kristín Svavarsdóttir, Kristinn Pétur Magnússon
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Genome-wide identification of the Carya illinoinensis bZIP transcription factor and the potential function of S1-bZIPs in abiotic stresses Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-13 Nianqin Jiang, Linna Wang, Yangang Lan, Hongxia Liu, Xiaoyue Zhang, Wei He, Min Wu, Hanwei Yan, Yan Xiang
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Phenotyping and genotyping of Pistacia atlantica Desf. subsp. kurdica along an environmental gradient in the semi-arid forests of western and southern Iran Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-02 Mohammad-Shafie Rahmani, Mohammad-Reza Naghavi, Ali-Akbar Shahnejat Bushehri, Naghi Shabanian, Lars-Gernot Otto
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Long-distance dispersal drives the genetic variation and historical demography of Quercus magnoliifolia and Quercus resinosa (Fagaceae) in the Mexican highlands Tree Genet. Genomes (IF 2.4) Pub Date : 2023-10-02 Ana Albarrán-Lara, Maried Ochoa-Zavala, Andres Torres-Miranda, Ivan M. De-la-Cruz, Patricia Dávila-Aranda, Juan M. Peñaloza-Ramírez, Hernando Rodríguez-Correa, Ken Oyama
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The domestication and breeding history of Castanea crenata Siebold et Zucc. estimated by direction of gene flow and approximate Bayesian computation Tree Genet. Genomes (IF 2.4) Pub Date : 2023-09-28 Sogo Nishio, Norio Takada, Yukie Takeuchi, Atsushi Imai, Megumi K. Kimura, Hiroyuki Iketani
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Demographic history and conservation aspects of two relict shrubs (Daphnimorpha spp., Thymelaeaceae) showing disjunct and restricted distribution in the southern part of Japan Tree Genet. Genomes (IF 2.4) Pub Date : 2023-09-19 Daiki Takahashi, Yoshihisa Suyama
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Pleistocene-dated genomic divergence of avocado trees supports cryptic diversity in the Colombian germplasm Tree Genet. Genomes (IF 2.4) Pub Date : 2023-09-14 Jhon A. Berdugo-Cely, Andrés J. Cortés, Felipe López-Hernández, Paola Delgadillo-Durán, Ivania Cerón-Souza, Paula H. Reyes-Herrera, Alejandro A. Navas-Arboleda, Roxana Yockteng
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Range shift and introgression of three Japanese Abies species: insights from population genetic data and species distribution modeling Tree Genet. Genomes (IF 2.4) Pub Date : 2023-09-09 Kentaro Uchiyama, Sayaka Fujii, Ikutaro Tsuyama, Nobuyuki Tanaka, Suzuki Setsuko, Megumi K. Kimura, Yoshihisa Suyama, Yoshihiko Tsumura
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Recent advances in genomics, conservation, and breeding of pistachio Tree Genet. Genomes (IF 2.4) Pub Date : 2023-08-24 Sarra Choulak, Khaled Chatti, Soumaya Rhouma
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Genetic diversity and structure in wild and cultivated populations of an emblematic African tree species, Garcinia kola (Clusiaceae) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-08-14 Boniface Tientcheu Yogom, Marie-Louise Avana-Tientcheu, Franck K. Monthé, Pulchérie Bissiengou, Jean Joël Loumeto, Leïla Zekraoui, Catherine Hervouet, Théophile Fonkou, Cédric Mariac, Jérôme Duminil
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Association genetics of wood traits in European black poplar (Populus nigra L.) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-31 Zeki Kaya, Bircan Taşkıran, Asiye Uluğ, Aysun D. Güvendiren, Jill L. Wegrzyn, David B. Neale
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Construction of a high-density genetic linkage map and QTL analysis using an interspecific F1 population in pistachio Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-29 Md Rashedul Islam, Habibullah Tevfik, Hayat Topçu, Harun Karcı, Salih Kafkas
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Heterochromatic patterns of Citrus revisited: a new look at species origins and karyotype evolution Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-19 Claudio Montenegro, Fernando Roa, Walter dos Santos Soares Filho, Ana Emília Barros e Silva
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Breeding value predictive accuracy for scarcely recorded traits in a Eucalyptus grandis breeding population using genomic selection and data on predictor traits Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-18 Esteban J. Jurcic, Pamela V. Villalba, Joaquín Dutour, Carmelo Centurión, Sebastián Munilla, Eduardo P. Cappa
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Low-density AgriSeq targeted genotyping-by-sequencing markers are efficient for pedigree quality control in Pinus taeda L. breeding Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-11 Yu-Ming Lin, Mohammad Nasir Shalizi, Trevor D. Walker, Edwin Lauer, Claudio D. Carrasco, Krishna Reddy Gujjula, Haktan Suren, Fikret Isik
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Simulating deployment of genetic gain in a radiata pine breeding program with genomic selection Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-06 Duncan McLean, Luis Apiolaza, Mark Paget, Jaroslav Klápště
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Genomic selection: an effective tool for operational Eucalyptus globulus clonal selection Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-05 Claudio Balocchi, Ricardo Durán, Paulina Nuñez, José Ordoñez, Mauricio Ramírez, Jaime Zapata-Valenzuela
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Single nucleotide polymorphism analysis in Leptospermum scoparium (Myrtaceae) supports two highly differentiated endemic species in Aotearoa New Zealand and Australia Tree Genet. Genomes (IF 2.4) Pub Date : 2023-07-04 David Chagné, Sara Montanari, Chris Kirk, Caroline Mitchell, Peter Heenan, Emily Koot
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Re-annotation of the Liriodendron chinense genome identifies novel genes and improves genome annotation quality Tree Genet. Genomes (IF 2.4) Pub Date : 2023-06-15 Hainan Wu, Ziyuan Hao, Zhonghua Tu, Yaxian Zong, Lichun Yang, Chunfa Tong, Huogen Li
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An overview of teak genetic improvement towards conservation of genetic resources in a changing climate with special emphasis on India Tree Genet. Genomes (IF 2.4) Pub Date : 2023-05-30 Swathi Balakrishnan, Yasodha Ramasamy, Suma Arun Dev
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QTL mapping of the narrow-branch “Pendula” phenotype in Norway spruce (Picea abies L. Karst.) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-05-05 Francisco Gil-Muñoz, Carolina Bernhardsson, Sonali Sachin Ranade, Douglas G. Scofield, Pertti O. Pulkkinen, Pär K. Ingvarsson, M. Rosario García-Gil
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Genetic breaks caused by ancient forest fragmentation: phylogeography of Staudtia kamerunensis (Myristicaceae) reveals distinct clusters in the Congo Basin Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-26 Samuel Vanden Abeele, Katarina Matvijev, Olivier J. Hardy, Dieu-Merci Assumani, Bhély Angoboy Ilondea, Hans Beeckman, Gael U. D. Bouka, Clay Archange Boupoya, Victor Deklerck, Jean-François Flot, Jean-François Gillet, Narcisse Guy Kamdem, Janvier Lisingo, Franck Monthe, Bonaventure Sonké, Steven B. Janssens
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Managing forest genetic resources for an uncertain future: findings and perspectives from an international conference Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-22 Juliette Archambeau, Simone Bianchi, Joukje Buiteveld, Marta Callejas-Díaz, Stephen Cavers, Henrik Hallingbäck, Chedly Kastally, Marina de Miguel, Sven Mutke, Leopoldo Sánchez, Richard Whittet, Santiago C. González-Martínez, Catherine Bastien
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Evolutionary relationship of the NBS-LRR gene family in Melaleuca and Eucalyptus (Myrtaceae) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-21 Swapan Chakrabarty, Ji-Fan Hsieh, Panchali Chakraborty, William J. Foley, Carsten Külheim
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Genetic consequence of widespread plantations of Cryptomeria japonica var. sinensis in Southern China: implications for afforestation strategies under climate change Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-18 Mengying Cai, Kentaro Uchiyama, Xinyu Li, Xingtong Wu, Yafeng Wen, Yoshihiko Tsumura
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Genome-wide association study for morphological, physiological, and productive traits in Coffea arabica using structural equation models Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-12 Matheus Massariol Suela, Camila Ferreira Azevedo, Ana Carolina Campana Nascimento, Mehdi Momen, Antônio Carlos Baião de Oliveira, Eveline Teixeira Caixeta, Gota Morota, Moysés Nascimento
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Abiotic factors predict taxonomic composition and genetic admixture in populations of hybridizing white oak species (Quercus sect. Quercus) on regional scale Tree Genet. Genomes (IF 2.4) Pub Date : 2023-04-05 Oliver Reutimann, Benjamin Dauphin, Andri Baltensweiler, Felix Gugerli, Antoine Kremer, Christian Rellstab
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Modeling covariance structures and optimizing Jatropha curcas breeding Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-31 Jeniffer Santana Pinto Coelho Evangelista, Marco Antônio Peixoto, Igor Ferreira Coelho, Filipe Manoel Ferreira, Tiago de Souza Marçal, Rodrigo Silva Alves, Saulo Fabricio da Silva Chaves, Erina Vitório Rodrigues, Bruno Gâlveas Laviola, Marcos Deon Vilela de Resende, Kaio Olimpio das Graças Dias, Leonardo Lopes Bhering
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Pigment composition analysis of fruit pulp in the recombinant progenies reveals the polygenic nature of pulp color inheritance in guava (Psidium guajava L.) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-23 Madhubala Thakre, Hanamant S., Ramkumar M.K., Rutuparna Senapati, Shalini Gaur Rudra, Supradip Saha, A. Nagaraja, M. K. Verma, Gopala Krishnan S., Eldho Varghese, Amitha Mithra Sevanthi
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Diversity and structure of Coffea canephora from old seminal crops in Espírito Santo, Brazil: genetic resources for coffee breeding Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-13 Iasmine Ramos Zaidan, Adésio Ferreira, Luina Ribeiro Noia, Jônatas Gomes Santos, Valderson Cabral de Arruda, Diego Pereira do Couto, Ramon Azevedo Braz, João Felipe de Brites Senra, Fábio Luiz Partelli, Camila Ferreira Azevedo, Marcia Flores da Silva Ferreira
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QTL mapping of flavanone glycoside accumulation in citrus Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-11 Takehiro Kubo, Yomi Matsumoto, Takumi Yamashita, Satoshi Watanabe, Nobuhiro Kotoda
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Molecular marker studies on Balanites aegyptiaca and allied species for species delimitation, identification, and authentication Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-09 Jagdishchandra K. Monpara, Kiran S. Chudasama, Manish L. Vekaria, Virendra J. Patel, Vrinda S. Thaker
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Late Quaternary history of Siberian stone pine as revealed by genetic and paleoecological data Tree Genet. Genomes (IF 2.4) Pub Date : 2023-03-07 Denis N. Shuvaev, Vladimir L. Semerikov, Galina V. Kuznetsova, Yuliya A. Putintseva
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Continental-wide population genetics and post-Pleistocene range expansion in field maple (Acer campestre L.), a subdominant temperate broadleaved tree species Tree Genet. Genomes (IF 2.4) Pub Date : 2023-02-16 Eric Wahlsteen, Evangelia V. Avramidou, Gregor Bozic, Rida Mohammed Mediouni, Bernhard Schuldt, Halina Sobolewska
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Genome-wide SNP discovery in native American and Hungarian Robinia pseudoacacia genotypes using next-generation double-digest restriction-site-associated DNA sequencing (ddRAD-Seq) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-02-09 Zoltán A. Köbölkuti, Endre Gy. Tóth, Zsolt Keserű, John H. Fike, Bence Bolla, Tamás Ábri, Attila Borovics, Attila Benke, Klára Cseke
Robinia pseudoacacia L. (commonly known as black locust) is an economically and environmentally important plant, native to the eastern USA, and introduced into several European countries, including Hungary. An early successional leguminous tree, the black locust is characterized by tolerance to degraded sites, rapid growth rate, dense and rot-resistant wood, and heavy flowering. Due to its economic
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Genome-wide association analysis and validation with KASP markers for nut and shell traits in almond (Prunus dulcis [Mill.] D.A.Webb) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-02-07 Gina M. Sideli, Diane Mather, Michelle Wirthensohn, Federico Dicenta, Shashi N. Goonetilleke, Pedro José Martínez-García, Thomas M. Gradziel
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Parametric mapping of QTL for resistance to European canker in apple in ‘Aroma’ × ‘Discovery’ Tree Genet. Genomes (IF 2.4) Pub Date : 2023-02-06 Jonas Skytte af Sätra, Firuz Odilbekov, Pär K. Ingvarsson, Eric van de Weg, Larisa Garkava-Gustavsson
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On the accuracy of threshold genomic prediction models for leaf miner and leaf rust resistance in arabica coffee Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-27 Humberto Fanelli Carvalho, Luís Felipe Ventorim Ferrão, Giovanni Galli, Juliana Vieira Almeida Nonato, Lilian Padilha, Mirian Perez Maluf, Márcio Fernando Ribeiro de Resende, Roberto Fritsche-Neto, Oliveiro Guerreiro-Filho
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Genome-wide identification, expression analysis, and functional verification of the JMJ (Jumonji) histone demethylase gene family in pear (Pyrus bretchneideri) Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-18 Waqar Khan, Weijuan Liu, Zhe Liu, Xiaoxuan Zhu, Juyou Wu, Peng Wang
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Genetic diversity and structure of seed pools in an old planted Pinus thunbergii population and seed collection strategy for gene preservation Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-17 Masakazu G. Iwaizumi, Aziz Akbar Mukasyaf, Ichiro Tamaki, Jin’ya Nasu, Naoko Miyamoto, Miho Tamura, Atsushi Watanabe
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Genomic prediction in a multi-generation Eucalyptus globulus breeding population Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-16 Geoffrey Haristoy, Laurent Bouffier, Luis Fontes, Luis Leal, Jorge A. P. Paiva, João-Pedro Pina, Jean-Marc Gion
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Making headway toward enduring changes: perspectives on breeding tree crops through genome editing Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-13 Renan Terassi Pinto, Chanaka Roshan Abeyratne, Luciano Vilela Paiva, Vagner Augusto Benedito
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Correction to: A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia Tree Genet. Genomes (IF 2.4) Pub Date : 2023-01-12 Camilla Stefanini, Katalin Csilléry, Bartosz Ulaszewski, Jarosław Burczyk, Michael E. Schaepman, Meredith C. Schuman
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Elucidation and characterization of QTLs for Russet formation on apple fruit in ‘Honeycrisp’-derived breeding germplasm Tree Genet. Genomes (IF 2.4) Pub Date : 2022-12-21 Ashley A. Powell, Sarah A. Kostick, Nicholas P. Howard, James J. Luby