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Isolation and whole-genome sequence analysis of Balagodu virus in Japan Virus Genes (IF 1.6) Pub Date : 2024-03-16 Mayumi Honda, Hironori Setoyama, Ryosuke Nabekura, Katsunori Murota, Yuto Suda, Tohru Yanase
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Ovine adenoviruses infecting sheep and goats in Türkiye: detection and molecular characterization of three different types Virus Genes (IF 1.6) Pub Date : 2024-03-15 Ilke Karayel-Hacioglu, Buket Gul, Deniz Acun Yildiz, Feray Alkan
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MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions Virus Genes (IF 1.6) Pub Date : 2024-02-18 Cuifang Ye, Xinyan Cao, Jinliang Sheng, Yanming Sun, Guang Li, Wenbin Fang, Yanbing Zhang
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Molecular analysis of the env, LTR, and pX regions of bovine leukemia virus in dairy cattle of Türkiye Virus Genes (IF 1.6) Pub Date : 2024-02-14
Abstract Bovine leukemia virus is a retrovirus that causes enzootic bovine leukosis and is associated with global economic losses in the livestock industry. The aim of this study was to investigate the genotype determination of BLVs from cattle housed in 6 different farms in Türkiye and the characterization of their LTR and pX (tax, rex, R3, and G4 gene) regions. For this purpose, blood samples from
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Characterization of a breakthrough vaccine escape strain associated with overt hepatitis B virus infection Virus Genes (IF 1.6) Pub Date : 2024-02-13 Mohammed El-Mowafy, Mohamed Elegezy, Mohamed El-Mesery, Abdelaziz Elgaml
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Isolation and molecular characterization of lumpy skin disease virus from Tamil Nadu, India during the outbreaks from 2020 to 2022 Virus Genes (IF 1.6) Pub Date : 2024-02-12 Manimuthu Prabhu, Shanmugasamy Malmarugan, Sithanandam Rajagunalan, Balakrishnan Govindan, Lakshmi Prasanth Thangavelu, Ganapathi Palanisamy, Revanaiah Yogisharadhya, Kumaragurubaran Karthik
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Guinea pig herpes like virus is a gamma herpesvirus Virus Genes (IF 1.6) Pub Date : 2024-02-10 Brent A. Stanfield, Emmanuelle Ruiz, Vladimir N. Chouljenko, Konstantin G. Kousoulas
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Correction: Molecular characterization of a novel variant of infectious bronchitis virus from field outbreaks in backyard chicken population of North East India Virus Genes (IF 1.6) Pub Date : 2024-02-01 Tridib Kumar Rajkhowa, Doris Zodinpuii, Kiran Jayappa, Lalthapuii Hauhnar
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Comparison of HVT-ND recombinant and convection-based Newcastle disease vaccination programs in the protection against the genotype VII NDV challenges: an experimental study Virus Genes (IF 1.6) Pub Date : 2024-01-30
Abstract Newcastle disease virus (NDV) belongs to the Avulavirus genus and Paramyxoviridae family virus that causes acute, highly infectious Newcastle disease in poultry. The two proteins of haemagglutinin neuraminidase (HN) and fusion (F) are key virulence factors with an important role in its immunogenicity. Genotype VII NDV is still among the most serious viral hazards to the poultry industry worldwide
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Characterization and complete genome analysis of Klebsiella phage Kp109 with lytic activity against Klebsiella pneumoniae Virus Genes (IF 1.6) Pub Date : 2024-01-27
Abstract Klebsiella pneumonia is a serious pathogen involved in a range of infections. The increasing frequency of infection associated with K. pneumoniae and accelerated development of antimicrobial resistance has limited the available options of antibiotics for the treatment of infection. Bacteriophages are an attractive substitute to alleviate the problem of antibiotic resistance. In this study
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Determination of molecular epidemiologic pattern of human T-lymphotropic virus type 1 (HTLV-1) in Alborz province, Iran Virus Genes (IF 1.6) Pub Date : 2024-01-25
Abstract Human T-cell lymphotropic virus type 1 (HTLV-1) is linked to two debilitating diseases, adult T-cell leukemia/lymphoma (ATLL) and HTLV-1 associated myelopathy tropical spastic paraparesis (HAM/TSP), which are prevalent in various parts of the world, including the Alborz province in Iran. Understanding the prevalence and evolutionary relationships of HTLV-1 infections in these endemic areas
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Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, Indonesia Virus Genes (IF 1.6) Pub Date : 2024-01-20 Mohamad Saifudin Hakim, Gunadi, Ayu Rahayu, Hendra Wibawa, Laudria Stella Eryvinka, Endah Supriyati, Khanza Adzkia Vujira, Kristy Iskandar, Afiahayati, Edwin Widyanto Daniwijaya, Farida Nur Oktoviani, Luthvia Annisa, Fadila Dyah Trie Utami, Verrell Christopher Amadeus, Setiani Silvy Nurhidayah, Tiara Putri Leksono, Fiqih Vidiantoro Halim, Eggi Arguni, Titik Nuryastuti, Tri Wibawa
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Comparative genomics of the Neodiprion sertifer nucleopolyhedrovirus from Turkey with the fewest ORFs among baculoviruses Virus Genes (IF 1.6) Pub Date : 2024-01-19 Özgül Doğan, Mahir Budak, Melissa Şafak Salman, Ertan Mahir Korkmaz
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Two novel phages, Klebsiella phage GADU21 and Escherichia phage GADU22, from the urine samples of patients with urinary tract infection Virus Genes (IF 1.6) Pub Date : 2024-01-18 Hanife Salih Doğan, Abdulkerim Karaynir, Ülkü İrem Yilmaz, Bilgin Bahadır Başgöz, Tuğrul Hoşbul, Bülent Bozdoğan
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DsRNA sequencing revealed a previously missed terminal sequence of a +ssRNA virus that infects dinoflagellate Heterocapsa circularisquama Virus Genes (IF 1.6) Pub Date : 2024-01-10
Abstract Heterocapsa circularisquama RNA virus (HcRNAV) is the only dinoflagellate-infecting RNA virus cultured. However, only two strains of HcRNAV have been registered with complete genome sequences (strains 34 and 109 for UA and CY types, respectively). To extend the genomic information of HcRNAV, we performed full-genome sequencing of an unsequenced strain of HcRNAV (strain A8) using the fragmented
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Molecular characterization of a novel variant of infectious bronchitis virus from field outbreaks in backyard chicken population of North East India Virus Genes (IF 1.6) Pub Date : 2024-01-07 Tridib Kumar Rajkhowa, Doris Zodinpuii, Kiran Jayappa, Lalthapuii Hauhnar
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Virulence evaluation of Israeli Marek’s disease virus isolates from commercial poultry using their meq gene sequence Virus Genes (IF 1.6) Pub Date : 2024-01-06 Irit Davidson, Caterina Lupini, Elena Catelli, Giulia Quaglia, Luca Maddaloni, Giulia Mescolini
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A novel bluetongue virus serotype 2 strain isolated from a farmed Florida white-tailed deer (Odocoileus virginianus) arose from reassortment of gene segments derived from co-circulating serotypes in the Southeastern USA Virus Genes (IF 1.6) Pub Date : 2024-01-05 Pedro H. O. Viadanna, Austin Surphlis, An-Chi Cheng, Catherine E. Dixon, Sarah Meisner, Kristen N. Wilson, Zoe S. White, Emily DeRuyter, Tracey D. Logan, Juan M. C. Krauer, John A. Lednicky, Samantha M. Wisely, Kuttichantran Subramaniam
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Rapid detection of human adenovirus subgroup B using recombinase polymerase amplification assay Virus Genes (IF 1.6) Pub Date : 2024-01-04 Yongzhe Zhu, Binghui Xia, Haizhou Xu, Zengxin Liu, Ru Wang, Qingqing Cai, Ping Zhao, Zhongtian Qi
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A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses Virus Genes (IF 1.6) Pub Date : 2023-12-30 Tobias Lutz, Gitta Jutta Langer, Cornelia Heinze
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Full-length genome characterization of a novel mitovirus isolated from the root rot fungus Armillaria mellea Virus Genes (IF 1.6) Pub Date : 2023-12-16 Sıla Erkmen, Ergin Sahin, Ilgaz Akata
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First report of the whole-genome sequence analysis of avian rotavirus A from Japanese chickens Virus Genes (IF 1.6) Pub Date : 2023-12-15 Ayana Okamoto, Hitoshi Takemae, Makoto Nagai, Shinichiro Hashimoto, Tetsuya Mizutani, Tetsuya Furuya
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P4 protein of an Indian isolate of rice tungro bacilliform virus modulates gene silencing Virus Genes (IF 1.6) Pub Date : 2023-12-06 Madhvi Naresh, Arunima Purkayastha, Indranil Dasgupta
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Nucleotide at position 66 of NS2A in Japanese encephalitis virus is associated with the virulence and proliferation of virus Virus Genes (IF 1.6) Pub Date : 2023-11-08 Ning Tan, Chen Chen, Yang Ren, Rong Huang, Zhuang Zhu, Kui Xu, Xiaoyao Yang, Jian Yang, Lei Yuan
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Genetic analysis of human parainfluenza type 2 virus in Riyadh, Saudi Arabia Virus Genes (IF 1.6) Pub Date : 2023-10-31 Asma N. Alsaleh, Ibrahim M. Aziz, Noorah A. Alkubaisi, Fahad N. Almajhdi
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Characterization and genomic analysis of a novel bacteriophage BUCT_49532 lysing Klebsiella pneumoniae Virus Genes (IF 1.6) Pub Date : 2023-10-19 Guangye Zhang, Yucong Liu, Jinhong Wang, Nan Li, Pengjun Han, Yiming Chen, Weijian Xu, Changxia Liu
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The genome evolution of Marek’s disease viruses in chickens and turkeys in China Virus Genes (IF 1.6) Pub Date : 2023-10-18 Wen Li, Huifang Meng, Xianghui Liang, Jinyu Peng, David M. Irwin, Xuejuan Shen, Yongyi Shen
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Dispersion and diversification of Lyssavirus rabies transmitted from haematophagous bats Desmodus rotundus: a phylogeographycal study Virus Genes (IF 1.6) Pub Date : 2023-10-05 Helena Beatriz de Carvalho Ruthner Batista, Luiz Fernando Pereira Vieira, Juliana Galera Castilho Kawai, Willian de Oliveira Fahl, Camila Mosca Barboza, Samira Achkar, Rafael de Novaes Oliveira, Paulo Eduardo Brandão, Pedro Carnieli Junior
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Association of TREX1 polymorphism with disease progression in human immunodeficiency virus type-1 (HIV-1) infected patients Virus Genes (IF 1.6) Pub Date : 2023-09-20 Nastaran Tohidi, Seyed Ali Dehghan Manshadi, Mahboubeh Hajiabdolbaghi
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Aborted infection of human sodium taurocholate cotransporting polypeptide (hNTCP) expressing woodchuck hepatocytes with hepatitis B virus (HBV) Virus Genes (IF 1.6) Pub Date : 2023-09-20 Lu Yang, Di Zhou, Kächele Martin, Jun Wu, Mingfa Chen, Mengji Lu, Dongliang Yang, Ulrike Protzer, Michael Roggendorf, Jingjiao Song
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Isolation and genomic characterization of a cypovirus from Clanis bilineata Virus Genes (IF 1.6) Pub Date : 2023-09-12 Zhigao Zhan, Junhui Chen, Limei Guan, Wendong Kuang, Jian Yang, Jinchang Wang, Zhuorong Liu, Jianghuai Li, Zheng’an Deng, Liang Jin
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Complete genome sequence of Xanthomonas phage M29, a new member of Foxunavirus isolated in the Czech Republic Virus Genes (IF 1.6) Pub Date : 2023-09-04 Mária Neoralová, Sára Brázdová, Aleš Eichmeier, Karel Petrzik
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SCD1 inhibits HBV replication by regulating autophagy under high lipid conditions Virus Genes (IF 1.6) Pub Date : 2023-08-29 Xuan Du, Xiaoyi Shi, Mei Han, Xiaoyun Gao, Chuang Wang, Chunmeng Jiang, Chunwen Pu
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Design and validation of a laboratory-developed diagnostic assay for monkeypox virus Virus Genes (IF 1.6) Pub Date : 2023-08-17 Nikola Sklenovská, Mandy Bloemen, Valentijn Vergote, Anne-Sophie Logist, Bert Vanmechelen, Lies Laenen, Emmanuel André, Jean-Jacques Muyembe-Tamfum, Elke Wollants, Marc Van Ranst, Piet Maes, Tony Wawina-Bokalanga
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Novel genomic targets for proper subtyping of bovine viral diarrhea virus 1 (BVDV-1) and BVDV-2 Virus Genes (IF 1.6) Pub Date : 2023-08-17 Carolina Isabela Mucellini, José Valter Joaquim Silva Júnior, Pablo Sebastian Britto de Oliveira, Rudi Weiblen, Eduardo Furtado Flores
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Identification and characterization of Phaseolus vulgaris endornavirus 1, 2 and 3 in common bean cultivars of East Africa Virus Genes (IF 1.6) Pub Date : 2023-08-10 Thomas J. Brine, Sam Crawshaw, Alex M. Murphy, Adrienne E. Pate, John P. Carr, Francis O. Wamonje
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MiR-BART1-3p and BART18-5p inhibit cell migration, proliferation and activate autophagy in Epstein-Barr virus-associated gastric cancer by targeting erythropoietin-producing human hepatocellular 2 Virus Genes (IF 1.6) Pub Date : 2023-08-03 Duo Shi, Wen Liu, Xing Zhang, Yan Zhang, Bing Luo
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Genome sequence of a Sobemovirus from the feces of Northern Pintail (Anas acuta) Virus Genes (IF 1.6) Pub Date : 2023-08-02 Yu-Rong Wei, Xiao-Yun Mi, Jian-Yong Wu
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Importation of a novel Indian Ocean lineage carrying E1-K211E and E2-V264A of Chikungunya Virus in Zhejiang Province, China, in 2019 Virus Genes (IF 1.6) Pub Date : 2023-07-19 Lingxuan Su, Xiuyu Lou, Hao Yan, Zhangnv Yang, Haiyan Mao, Wenwu Yao, Yi Sun, Junhang Pan, Yanjun Zhang
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Jojan: a novel virus that lyses Stenotrophomonas maltophilia from dog Virus Genes (IF 1.6) Pub Date : 2023-07-17 Karel Petrzik, Sára Brázdová
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Characterization of two novel reassortant bluetongue virus serotype 1 strains isolated from farmed white-tailed deer (Odocoileus virginianus) in Florida, USA Virus Genes (IF 1.6) Pub Date : 2023-07-13 Pedro H. O. Viadanna, Savannah G. Grace, Tracey D. Logan, Emily DeRuyter, Julia C. Loeb, Kristen N. Wilson, Zoe S. White, Juan M. C. Krauer, John A. Lednicky, Thomas B. Waltzek, Samantha M. Wisely, Kuttichantran Subramaniam
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Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium Virus Genes (IF 1.6) Pub Date : 2023-07-09 Qianyu Qu, Tao Chen, Penggang He, Huaixin Geng, Peibin Zeng, Guangxin Luan
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Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan Virus Genes (IF 1.6) Pub Date : 2023-07-05 Tung Phan, Toshiyuki Hikita, Shoko Okitsu, Yuki Akari, Satoshi Komoto, Satoshi Hayakawa, Hiroshi Ushijima
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Peptide YY inhibits transcription and replication of hepatitis B virus by suppressing promoter/enhancer activity Virus Genes (IF 1.6) Pub Date : 2023-06-28 Xiaolun Xu, Weiping Zhou, Xing Tian, Zhongjia Jiang, Xuanhe Fu, Jun Cao, Ye Sun, Biao Yang, Xueqian Li, Yanting Li, Chunmeng Zhang, Guangyan Liu
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RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections Virus Genes (IF 1.6) Pub Date : 2023-07-01 Steven Van Borm, V. Roupie, A. Linden, D. Vangeluwe, V. De Waele, Bénédicte Lambrecht, Mieke Steensels
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Screening and identification of specific cluster miRNAs in N2a cells infected by H7N9 virus Virus Genes (IF 1.6) Pub Date : 2023-07-03 Yitong Yin, Zengzhao Qiu, Yuxuan Lei, Jia Huang, Ying Sun, Hui Liu, Weihua Wu, Xin Wang, Yuelong Shu, Qing Zheng, Shisong Fang
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Zika virus infection induces expression of NRF2 and antioxidant systems in trophoblast cells Virus Genes (IF 1.6) Pub Date : 2023-06-16 Manuel Adrián Velázquez Cervantes, Julio Angel Vázquez Martinez, Luis Didider Gonzalez García, Orestes Lopez Ortega, Haruki Arevalo Romero, Araceli Montoya Estrada, Macario Martínez Castillo, Arturo Flores Pliego, Guadalupe León Reyes, Addy Cecilia Helguera Repetto, Julio García Cordero, Moisés León Juárez
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Genomic characterization of three bacteriophages infecting donkey-derived Escherichia coli Virus Genes (IF 1.6) Pub Date : 2023-06-15 Jia-Qi Cui, Wen-Hua Liu, Can Zhang, Ling Zou, Hui-Ying Ren
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Preparation of monoclonal antibodies against Epstein-Barr virus glycoprotein 350 Virus Genes (IF 1.6) Pub Date : 2023-06-16 Jiao Zheng, Xuan Zeng, Linxiu Zeng, Ye Xu, Zhihong Zhong, Yi Wu, Yilan Qiu, Rushi Liu
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Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B Virus Genes (IF 1.6) Pub Date : 2023-06-12 Malihe Naderi, Seyed Masoud Hosseini, Naser Behnampour, Iraj Shahramian, Abdolvahab Moradi
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Intra-host mutation rate of acute SARS-CoV-2 infection during the initial pandemic wave Virus Genes (IF 1.6) Pub Date : 2023-06-13 Kim El-Haddad, Thamali M. Adhikari, Zheng Jin Tu, Yu-Wei Cheng, Xiaoyi Leng, Xiangyi Zhang, Daniel Rhoads, Jennifer S. Ko, Sarah Worley, Jing Li, Brian P. Rubin, Frank P. Esper
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Basic research on herpes simplex viruses: are mutants still needed? Virus Genes (IF 1.6) Pub Date : 2023-06-07 Bertfried Matz,Johannes Blümel,Oliver Schildgen,Anna Maria Eis-Hübinger,Hendrik Streeck
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Characterization of a reassortant H11N9 subtype avian influenza virus isolated from spot-billed duck in China Virus Genes (IF 1.6) Pub Date : 2023-06-02 Bo Wang, Yanyi Huang, Bin Hu, Heng Zhang, Shuyi Han, Ziwen Yang, Qianqian Su, Hongxuan He
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Approaches to identify canine distemper virus with neurological symptoms on the basis of molecular characterization of hemagglutinin and fusion genes Virus Genes (IF 1.6) Pub Date : 2023-06-01 Hasbi Sait Saltık, Kamil Atlı
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Is COVID-19 severity associated with telomere length? A systematic review and meta-analysis Virus Genes (IF 1.6) Pub Date : 2023-06-01 Madhumitha Haridoss, Lavanya Ayyasamy, Bhavani Shankara Bagepally
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Antibacterial effects of single phage and phage cocktail against multidrug-resistant Klebsiella pneumoniae isolated from diabetic foot ulcer Virus Genes (IF 1.6) Pub Date : 2023-05-31 Javad Jokar, Raed Obaid Saleh, Niloofar Rahimian, Abdolmajid Ghasemian, Ghazal Ghaznavi, Amirhossein Radfar, Elham Zarenezhad, Sohrab Najafipour
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Extensive ITR expansion of the 2022 Mpox virus genome through gene duplication and gene loss Virus Genes (IF 1.6) Pub Date : 2023-05-31 Annika Brinkmann, Claudia Kohl, Katharina Pape, Daniel Bourquain, Andrea Thürmer, Janine Michel, Lars Schaade, Andreas Nitsche
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Genetic variability and mutation of Epstein‒Barr virus (EBV)-encoded LMP-1 and BHRF-1 genes in EBV-infected patients: identification of precise targets for development of personalized EBV vaccines Virus Genes (IF 1.6) Pub Date : 2023-05-27 Yue Wang, Yuan Rong, Lijuan Yang, Zhiyan Lu
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Molecular characterization of Brazilian FeLV strains in São Luis, Maranhão Brazil Virus Genes (IF 1.6) Pub Date : 2023-05-17 Nathálya dos Santos Martins, Ana Paula Sousa Rodrigues, Juliana Marques Bicalho, Joanna Jéssica Albuquerque, Luana Luz Reis, Luciana Luz Alves, Renata Mondego de Oliveira, Larissa Sarmento dos Santos, Alcina Vieira de Carvalho Neta, Rudson Almeida de Oliveira, Rafael Cardoso Carvalho, Ferdinan Almeida Melo, Jenner Karlisson Pimenta dos Reis, Ana Lucia Abreu-Silva
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Identification of monoclonal antibody targeting epitope on p72 trimeric spike of African swine fever virus Virus Genes (IF 1.6) Pub Date : 2023-05-16 Xulai Duan, Yingnan Liu, Zongyan Chen, Zhenhua Xie, Chuanwen Tian, Yao Li, Lu Lv, Rongrong Wang, Jingyi Liu, Hongjun Chen