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Cytomolecular trends in Chamaecrista Moench (Caesalpinioideae, Leguminosae) diversification Genetica (IF 1.5) Pub Date : 2024-02-21 Guilherme Tomaz Braz, Brena Van-Lume, Kátia Ferreira Marques de Resende, Felipe Pereira Cardoso, Ludmila Oliveira, Maria José Gomes de Andrade, Gustavo Souza, Giovana Augusta Torres
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Nuclear gene introgressions in hybrid populations of water frog Pelophylax esculentus complex: geographical analysis of the phenomenon and its interpretation Genetica (IF 1.5) Pub Date : 2024-02-15 Sergey V. Mezhzherin, Svyatoslav Yu. Morozov-Leonov, Olga V. Rostovska
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Differential amplification of the subtelomeric satellite DNA JcSAT1 in the genus Jatropha L. (Euphorbiaceae) Genetica (IF 1.5) Pub Date : 2024-02-13 Tiago Ribeiro, Emanuelle Vasconcelos, José Roseno de Mendonça Filho, Shusei Sato, Daniela de Argollo Marques, Ana Christina Brasileiro-Vidal
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Genetic basis and repeatability for desiccation resistance in Drosophila melanogaster (Diptera: Drosophilidae) Genetica (IF 1.5) Pub Date : 2023-12-16
Abstract Dehydration is a stress factor for organisms inhabiting natural habitats where water is scarce. Thus, it may be expected that species facing arid environments will develop mechanisms that maximize resistance to desiccation. Insects are excellent models for studying the effects of dehydration as well as the mechanisms and processes that prevent water loss since the effect of desiccation is
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Insulin and circadian rhythm genes of the Nile rat (Arvicanthis niloticus) are conserved and orthologous to those in the rat, mouse and human Genetica (IF 1.5) Pub Date : 2023-12-15 Soon-Sen Leow, Jia-Shiun Khoo, Siuk-Mun Ng, Wei-Kang Lee, Chee-Choong Hoh, Syed Fairus, Ravigadevi Sambanthamurthi, K. C. Hayes
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Methods for two nonstandard problems arising from the Luria–Delbrück experiment Genetica (IF 1.5) Pub Date : 2023-11-27 Qi Zheng
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Forecasting effects of climate changes on the population genetic structure of Anacardium occidentale in the Cerrado biome, Brazil Genetica (IF 1.5) Pub Date : 2023-11-03 Jacqueline Souza Lima, Rosane Garcia Collevatti, Leciane Kárita de Oliveira, Lázaro José Chaves, Ronaldo Veloso Naves, Thannya Nascimento Soares, José Alexandre Felizola Diniz Filho, Mariana Pires de Campos Telles
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Comparative transcriptome analysis of eyes reveals the adaptive mechanism of mantis shrimp (oratosquilla oratoria) induced by a dark environment Genetica (IF 1.5) Pub Date : 2023-10-13 Xiaoli Sun, Ling He, Bujin Ayi, Yuyang Qiu, Jiayue Xu, Wei Yu, Tinghao Yan, Ge Ding, Boping Tang, Gang Wang, Daizhen Zhang
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Approaches to increase the validity of gene family identification using manual homology search tools Genetica (IF 1.5) Pub Date : 2023-10-10 Benjamin J. Nestor, Philipp E. Bayer, Cassandria G. Tay Fernandez, David Edwards, Patrick M. Finnegan
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The misregulation of mitochondria-associated genes caused by GAGA-factor lack promotes autophagic germ cell death in Drosophila testes Genetica (IF 1.5) Pub Date : 2023-10-11 Natalia V. Dorogova, Svetlana A. Fedorova, Elena U. Bolobolova, Elina M. Baricheva
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Chromosome evolution in Iberolacerta, a genus that deviates from the standard karyotype formula of Lacertidae Genetica (IF 1.5) Pub Date : 2023-09-01 Horacio Naveira, Verónica Rojo, Iván Gómez-Seoane, Malcolm A. Ferguson-Smith, Jorge C. Pereira, Andrés Martínez-Lage
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Genome-wide analysis of glutamate receptor gene family in allopolyploid Brassica napus and its diploid progenitors Genetica (IF 1.5) Pub Date : 2023-08-25 Bidhan Chandra Roy, Nikita Shukla, Ratan Gachhui, Ashutosh Mukherjee
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Patterns of cytonuclear discordance and divergence between subspecies of the scarlet macaw (Ara macao) in Central America Genetica (IF 1.5) Pub Date : 2023-08-23 Matthew L. Aardema, Kari L. Schmidt, George Amato
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Macroevolutionary consequences of karyotypic changes in the neotropical Serrasalmidae fishes (Ostariophysi, Characiformes) diversification Genetica (IF 1.5) Pub Date : 2023-08-11 Uedson Pereira Jacobina, Alany Itala Pontes, Lucas Costa, Gustavo Sousa
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Sequence and expression analysis of the spermatogenesis-specific gene cognates, wampa and Prosα6T, in Drosophila suzukii Genetica (IF 1.5) Pub Date : 2023-06-10 Qinwen Xia, Kaleem Tariq, Daniel A. Hahn, Alfred M. Handler
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Genome-wide identification and expression analysis of the Pisum sativum (L.) APETALA2/ethylene-responsive factor (AP2/ERF) gene family reveals functions in drought and cold stresses Genetica (IF 1.5) Pub Date : 2023-06-03 Trishna Jarambasa, Preetom Regon, Sabnoor Yeasrin Jyoti, Divya Gupta, Sanjib Kumar Panda, Bhaben Tanti
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Genomic survey of MYB gene family in six pearl millet (Pennisetum glaucum) varieties and their response to abiotic stresses Genetica (IF 1.5) Pub Date : 2023-06-02 Jinhang Lv, Yue Xu, Xuming Dan, Yuchen Yang, Chunli Mao, Xixi Ma, Jie Zhu, Min Sun, Yarong Jin, Linkai Huang
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Molecular evolution of the hemoglobin gene family across vertebrates Genetica (IF 1.5) Pub Date : 2023-04-17 Yang Mao, Taotao Peng, Feng Shao, Qingyuan Zhao, Zuogang Peng
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Genome wide identification and characterization of MATE family genes in mangrove plants Genetica (IF 1.5) Pub Date : 2023-04-04 M. Shijili, Ravisankar Valsalan, Deepu Mathew
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Integrative comparative analysis of avian chromosome evolution by in-silico mapping of the gene ontology of homologous synteny blocks and evolutionary breakpoint regions Genetica (IF 1.5) Pub Date : 2023-03-20 Jules Claeys, Michael N. Romanov, Darren K. Griffin
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The discovery of multiple active mys-related LTR-retroelements within the Neotominae subfamily of cricetid rodents Genetica (IF 1.5) Pub Date : 2023-03-04 David H. Kass, Sarah Beatty, Ashlee Smith, Megan Scott, Dishita Shah, Mary Czaplicki
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Genome-wide investigation of the WRKY transcription factor gene family in weeping forsythia: expression profile and cold and drought stress responses Genetica (IF 1.5) Pub Date : 2023-02-28 Ya-Lin Yang, Samuel A. Cushman, Shu-Chen Wang, Fan Wang, Qian Li, Hong-Li Liu, Yong Li
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Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert Genetica (IF 1.5) Pub Date : 2023-02-16 Afef Najjari, Ayoub Boussetta, Noha Youssef, Javier A. Linares-Pastén, Mouna Mahjoubi, Rahma Belloum, Haitham Sghaier, Ameur Cherif, Hadda Imene Ouzari
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Genome wide identification and evolutionary analysis of vat like NBS-LRR genes potentially associated with resistance to aphids in cotton Genetica (IF 1.5) Pub Date : 2023-01-30 U. Pirithiraj, M. Murugan, M. Jayakanthan, N. Manikanda Boopathi, V. Balasubramani, N. Premalatha, S. Hari Ramakrishnan, S. Selva babu
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Phylogenomics including the newly sequenced mitogenomes of two moths (Noctuoidea, Erebidae) reveals Ischyja manlia (incertae sedis) as a member of subfamily Erebinae Genetica (IF 1.5) Pub Date : 2023-01-28 Muzafar Riyaz, Rauf Ahmad Shah, Savarimuthu Ignacimuthu, Kuppusamy Sivasankaran
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An adaptive test based on principal components for detecting multiple phenotype associations using GWAS summary data Genetica (IF 1.5) Pub Date : 2023-01-19 Qianran Wei, Lili Chen, Yajing Zhou, Huiyi Wang
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Identification and expression of the CCO family during development, ripening and stress response in banana Genetica (IF 1.5) Pub Date : 2023-01-18 Liming Zeng, Liwang Zeng, Yu Wang, Zhengnan Xie, Minhua Zhao, Jie Chen, Xiaoxue Ye, Weiwei Tie, Meiying Li, Sang Shang, Libo Tian, Jian Zeng, Wei Hu
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New insights on the regulatory network of drought-responsive key genes in Arabidopsis thaliana Genetica (IF 1.5) Pub Date : 2022-12-06 Maryam Pasandideh Arjmand, Habibollah Samizadeh Lahiji, Mohammad Mohsenzadeh Golfazani, Mohammad Hassan Biglouei
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Comparative analysis of cold-responsive genes under short-term cold stimulation and cold-adaptive genes under long-term heterogeneous environments reveals a cold adaptation mechanism in weeping forsythia Genetica (IF 1.5) Pub Date : 2022-11-27 Yong Li, Shu-Chen Wang, Qian Li, Ming-Wan Li, Run-Li Mao, He-Chen Zhang, Wang-Jun Yuan, Jine Quan
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Easternmost distribution of Bufo bufo (Linnaeus, 1758) in Türkiye: implications for the putative contact zone between B. bufo and B. verrucosissimus Genetica (IF 1.5) Pub Date : 2022-11-24 Cantekin Dursun, Nurhayat Özdemir, Serkan Gül
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Dominance and inheritance patterns of mobility and death feigning in beetle strains selected for moving activity Genetica (IF 1.5) Pub Date : 2022-11-19 Kentarou Matsumura, Takahisa Miyatake
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The complete chloroplast genome of two Firmiana species and comparative analysis with other related species Genetica (IF 1.5) Pub Date : 2022-11-02 Qifeng Lu, Wenhua Luo
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Comparative analysis of microsatellites in coding regions provides insights into the adaptability of the giant panda, polar bear and brown bear Genetica (IF 1.5) Pub Date : 2022-10-26 Meiling Cheng, Daxin Xie, Megan Price, Chuang Zhou, Xiuyue Zhang
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The first assessment of the genetic diversity and structure of the endangered West Indian manatee in Cuba Genetica (IF 1.5) Pub Date : 2022-10-22 Anmari Alvarez-Aleman, Margaret E. Hunter, Thomas K. Frazer, James A. Powell, Eddy Garcia Alfonso, James D. Austin
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Characterization of the complete mitochondrial genome of Miamiensis avidus causing flatfish scuticociliatosis Genetica (IF 1.5) Pub Date : 2022-10-21 Na Young Kim, Sang Jung Ahn, Jung Soo Seo, Eun Ji Jeon, Mi Young Cho, Hye Sung Choi
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Long-term evolution of quantitative traits in the Drosophila melanogaster species subgroup Genetica (IF 1.5) Pub Date : 2022-10-15 Amir Yassin, Nelly Gidaszewski, Vincent Debat, Jean R. David
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Genetic structure of Enyalius capetinga (Squamata, Leiosauridae) in Central Cerrado and transitional areas between the Cerrado and the Atlantic forest, with updated geographic distribution Genetica (IF 1.5) Pub Date : 2022-10-13 M. A. Ishihara, F. M. C. B. Domingos, S. C. Gomides, I. A. Novelli, G. R. Colli, S. M. Vargas
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Variability of polyteny of giant chromosomes in Drosophila melanogaster salivary glands Genetica (IF 1.5) Pub Date : 2022-09-26 Volodymyr Yu. Strashnyuk, Lyubov A. Shakina, Daria A. Skorobagatko
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Identification, molecular characterization, and in silico structural analysis of larval salivary glands Netrin-A as a potent biomarker from Lucilia sericata (Diptera: Calliphoridae) Genetica (IF 1.5) Pub Date : 2022-09-22 Masoumeh Bagheri, Hamzeh Alipour, Tahereh Karamzadeh, Marzieh Shahriari-Namadi, Abbasali Raz, Kourosh Azizi, Javad Dadgar Pakdel, Mohammad Djaefar Moemenbellah-Fard
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Germline mutations directions are different between introns of the same gene: case study of the gene coding for amyloid-beta precursor protein Genetica (IF 1.5) Pub Date : 2022-09-21 Vladislav Victorovich Khrustalev, Tatyana Aleksandrovna Khrustaleva, Anna Vladimirovna Popinako
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Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia) Genetica (IF 1.5) Pub Date : 2022-09-09 Didier Aurelle, Marine Pratlong, Nicolas Oury, Anne Haguenauer, Pauline Gélin, Hélène Magalon, Mehdi Adjeroud, Pascal Romans, Jeremie Vidal-Dupiol, Michel Claereboudt, Camille Noûs, Lauric Reynes, Eve Toulza, François Bonhomme, Guillaume Mitta, Pierre Pontarotti
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The complete mitochondrial genome of Talpa martinorum (Mammalia: Talpidae), a mole species endemic to Thrace: genome content and phylogenetic considerations Genetica (IF 1.5) Pub Date : 2022-08-27 Sadık Demirtaş, Mahir Budak, Ertan M. Korkmaz, Jeremy B. Searle, David T. Bilton, İslam Gündüz
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Molecular phylogeny of Japanese marine Tanytarsini chironomids (Chironomidae: Chironominae) Genetica (IF 1.5) Pub Date : 2022-08-13 Atsuya Kodama, Rion Maruta, Hidetoshi Saito, Koichiro Kawai
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Recognition of functional genetic polymorphism using ESE motif definition: a conservative evolutionary approach to CYP2D6/CYP2C19 gene variants Genetica (IF 1.5) Pub Date : 2022-08-01 Mitra Samadi, Laleh Beigi, Fatemeh Yadegari, Alireza Madjid Ansari, Keivan Majidzadeh-A, Maryam Eskordi, Leila Farahmand
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The genotype–phenotype distinction: from Mendelian genetics to 21st century biology Genetica (IF 1.5) Pub Date : 2022-07-25 Gaëlle Pontarotti, Matteo Mossio, Arnaud Pocheville
The Genotype-Phenotype (G-P) distinction was proposed in the context of Mendelian genetics, in the wake of late nineteenth century studies about heredity. In this paper, we provide a conceptual analysis that highlights that the G-P distinction was grounded on three pillars: observability, transmissibility, and causality. Originally, the genotype is the non-observable and transmissible cause of its
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Special issue on "The relationship between genotype and phenotype: new insight into an old question". Genetica (IF 1.5) Pub Date : 2022-07-25 Dominique de Vienne,Pierre Capy
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Solving the grand challenge of phenotypic integration: allometry across scales Genetica (IF 1.5) Pub Date : 2022-07-20 François Vasseur, Adrianus Johannes Westgeest, Denis Vile, Cyrille Violle
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Genetics of yield component traits under salt stress at flowering stage and selection of salt tolerant pre-breeding lines for rice improvement Genetica (IF 1.5) Pub Date : 2022-07-15 Rajat Pruthi, Venkata Ramana Rao Puram, John Ontoy, Prasant K. Subudhi
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Chromosomal distribution of major rDNA and genome size variation in Belostoma angustum Lauck, B. nessimiani Ribeiro & Alecrim, and B. sanctulum Montandon (Insecta, Heteroptera, Belostomatidae) Genetica (IF 1.5) Pub Date : 2022-05-11 Cassiane Furlan Lopes, Alice Lemos Costa, Jaqueline Fernanda Dionísio, Andres Delgado Cañedo, Renata da Rosa, Analia Del Valle Garnero, José Ricardo Inacio Ribeiro, Ricardo José Gunski
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Identification of a 5-gene-risk score model for predicting luminal A-invasive lobular breast cancer survival Genetica (IF 1.5) Pub Date : 2022-05-10 Yi-Huan Chen, Tao-Feng Zhang, Yi-Yuan Liu, Jie-Hua Zheng, Wei-Xun Lin, Yao-Kun Chen, Jie-Hui Cai, Juan Zou, Zhi-Yang Li
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Comprehensive analysis of codon usage pattern in Withania somnifera and its associated pathogens: Meloidogyne incognita and Alternaria alternata Genetica (IF 1.5) Pub Date : 2022-04-13 Jyoti Chandan, Suruchi Gupta, Vikash Babu, Deepika Singh, Ravail Singh
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Human genes with codon usage bias similar to that of the nonstructural protein 1 gene of influenza A viruses are conjointly involved in the infectious pathogenesis of influenza A viruses Genetica (IF 1.5) Pub Date : 2022-04-08 Komi Nambou, Manawa Anakpa, Yin Selina Tong
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The species of Oxytropis DC. of section Gloeocephala Bunge (Fabaceae) from Northeast Asia: genetic diversity and relationships based on sequencing of the intergenic spacers of cpDNA and ITS nrDNA Genetica (IF 1.5) Pub Date : 2022-02-25 Alla Kholina, Marina Kozyrenko, Elena Artyukova, Valentin Yakubov, Mariya Khoreva, Elena Andrianova, Olga Mochalova, Denis Sandanov
Phylogenetic relationships within Oxytropis DC. sect. Gloeocephala Bunge from Northeast Asia were studied using plastid intergenic spacers (psbA–trnH + trnL–trnF + trnS–trnG) and ITS nrDNA. Populations of O. anadyrensis Vass., O. borealis DC., O. middendorffii Trautv., O. trautvetteri Meinsh., and O. vasskovskyi Jurtz. were monomorphic or characterised by a low level of chloroplast genetic diversity
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Mitochondrial DNA (CA)n dinucleotide repeat variations in Sinhalese and Vedda populations in Sri Lanka Genetica (IF 1.5) Pub Date : 2022-02-10 Anjana H. J. Welikala, Ruwandi Ranasinghe, Kamani H. Tennekoon, Joanne T. Kotelawala, Punsisi R. Weerasooriya
Sinhalese and Vedda people are respectively the major ethnic group and the descendants of the probably earliest inhabitants of Sri Lanka, both believed to have a long history of settlement on the island. However, very little information is available on the origin and possible migration patterns of the two populations. Some studies have focused on (CA) dinucleotide repeat variations located in the mitochondrial
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The Hedgehog pathway in penaeid shrimp: developmental expression and evolution of splice junctions in Pancrustacea Genetica (IF 1.5) Pub Date : 2022-02-07 Philip L. Hertzler, Emma J. Devries, Rachel A. DeBoer
Penaeid shrimp embryos undergo holoblastic division, gastrulation by invagination, and hatching as a nauplius larva. Posterior segments form and differentiate during larval development. Hedgehog (Hh) pathway genes from penaeid shrimp and other pancrustaceans were identified by in silico analysis of genomes and transcriptomes, and mapped onto a recent pancrustacean phylogeny to determine patterns of
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Heritability: What's the point? What is it not for? A human genetics perspective Genetica (IF 1.5) Pub Date : 2022-01-29 Nicolas Robette, Emmanuelle Génin, Françoise Clerget-Darpoux
In this paper, we explain the concept of heritability and describe the different methods and the genotype–phenotype correspondences used to estimate heritability in the specific field of human genetics. Heritability studies are conducted on extremely diverse human traits: quantitative traits (physical, biological, but also cognitive and behavioral measurements) and binary traits (as is the case of
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A comparative study of microsatellites among crocodiles and development of genomic resources for the critically endangered Indian gharial Genetica (IF 1.5) Pub Date : 2022-01-20 Sahil Mahfooz, Pallavi Singh, Yusuf Akhter
Next-generation sequencing has allowed us to explore new methods, where comparative and population genomics can be used simultaneously. Keeping this in mind, we surveyed and analyzed the frequency and distribution of microsatellites in the Indian gharial (Gavialis gangeticus) and compared it with American alligator (Alligator mississippiensis) and saltwater crocodile (Crocodylus porosus) to enrich
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Pathogen resistance in Sphagneticola trilobata (Singapore daisy): molecular associations and differentially expressed genes in response to disease from a widespread fungus Genetica (IF 1.5) Pub Date : 2022-01-15 Qi, Shan-Shan, Manoharan, Bharani, Dhandapani, Vignesh, Jegadeesan, Sridharan, Rutherford, Susan, Wan, Justin S. H., Huang, Ping, Dai, Zhi-Cong, Du, Dao-Lin
Understanding the molecular associations underlying pathogen resistance in invasive plant species is likely to provide useful insights into the effective control of alien plants, thereby facilitating the conservation of native biodiversity. In the current study, we investigated pathogen resistance in an invasive clonal plant, Sphagneticola trilobata, at the molecular level. Sphagneticola trilobata
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Applications of CRISPR/Cas9 technology for modification of the plant genome Genetica (IF 1.5) Pub Date : 2022-01-12 Deb, Sohini, Choudhury, Amrita, Kharbyngar, Banridor, Satyawada, Rama Rao
The CRISPR/Cas (Clustered regularly interspaced short palindromic repeats/ CRISPR associated protein 9) system was discovered in bacteria and archea as an acquired immune response to protect the cells from infection. This technology has now evolved to become an efficient genome editing tool, and is replacing older gene editing technologies. This technique uses programmable sgRNAs to guide the Cas9
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Comprehensive analysis of the LncRNAs, MiRNAs, and MRNAs acting within the competing endogenous RNA network of LGG Genetica (IF 1.5) Pub Date : 2022-01-07 Ding, Yiming, Liu, Hanjie, Zhang, Chuanbao, Bao, Zhaoshi, Yu, Shuqing
Messenger RNA (mRNA) and long noncoding RNA (lncRNA) targets interact via competitive microRNA (miRNA) binding. However, the roles of cancer-specific lncRNAs in the competing endogenous RNA (ceRNA) networks of low-grade glioma (LGG) remain unclear. This study obtained RNA sequencing data for normal solid tissue and LGG primary tumour tissue from The Cancer Genome Atlas database. We used a computational