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Diaphorobacter nitroreducens synergize with oxaliplatin to reduce tumor burden in mice with lung adenocarcinoma mSystems (IF 6.4) Pub Date : 2024-03-14 Yalan NiRui LiXiaoyu ShenDeli YiYilin RenFudong WangYan GengQingjun You1Department of Oncology, Affiliated Children’s Hospital of Jiangnan University, Wuxi, Jiangsu, China2Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, Jiangsu, China3Affiliated Hospital of Jiangnan University, Wuxi, China4School of Life Science
mSystems, Ahead of Print.
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Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes mSystems (IF 6.4) Pub Date : 2024-03-12 Zhiguo ZhangLu ZhangLihan ZhangHaiyan ChuJizhong ZhouFeng Ju1College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, China2Key Laboratory of Coastal Environment and Resources Research of Zhejiang Province, School of Engineering, Westlake University, Hangzhou, Zhejiang, China3Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang
mSystems, Ahead of Print.
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Combined transcriptomic and ChIPseq analyses of the Bordetella pertussis RisA regulon mSystems (IF 6.4) Pub Date : 2024-03-12 Loïc CoutteRudy AntoineStephanie SlupekCamille Locht1U1019–UMR9017, University of Lille, CNRS, Inserm, CHU Lille, CIIL-Center for Infection and Immunity of Lille, Institut Pasteur de Lille, Lille, France, Mark J. Mandel
mSystems, Ahead of Print.
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Decoding the chemical language of Suillus fungi: genome mining and untargeted metabolomics uncover terpene chemical diversity mSystems (IF 6.4) Pub Date : 2024-03-12 Sameer MudbhariLotus LofgrenManasa R. AppidiRytas VilgalysRobert L. HettichPaul E. Abraham1UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA2Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA3Biology Department, Duke University, Durham, North Carolina, USA, Yu-Liang Yang, Kristina HaslingerEmile Gluck-Thaler
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Bioactive exometabolites drive maintenance competition in simple bacterial communities mSystems (IF 6.4) Pub Date : 2024-03-12 John L. ChodkowskiAshley Shade1Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA2Universite Claude Bernard Lyon 1, Laboratoire d'Ecologie Microbienne, UMR CNRS 5557, UMR INRAE 1418, VetAgro Sup, Villeurbanne, France, Kiran Patil
mSystems, Ahead of Print.
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Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence mSystems (IF 6.4) Pub Date : 2024-03-11 Hindra Marie A. Elliot1Institute of Infectious Disease Research and Department of Biology, McMaster University, Hamilton, Ontario, Canada, Ákos T. Kovács
mSystems, Ahead of Print.
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Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial interspecific competition mSystems (IF 6.4) Pub Date : 2024-03-12 Jia WangManasa R. AppidiLeah H. BurdickPaul E. AbrahamRobert L. HettichDale A. PelletierMitchel J. Doktycz1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA2UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA, Stephen R. Lindemann
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Comprehensive virulence profiling and evolutionary analysis of specificity determinants in Staphylococcus aureus two-component systems mSystems (IF 6.4) Pub Date : 2024-03-12 Stephen Dela AhatorKaroline WenzlKristin HegstadChristian S. LentzMona Johannessen1Research Group for Host-Microbe Interactions, Centre for New Antibacterial Strategies (CANS), Department of Medical Biology, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway2Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection
mSystems, Ahead of Print.
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A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria mSystems (IF 6.4) Pub Date : 2024-03-12 Geraldine J. SullivanLars BarquistAmy K. Cain1ARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, Australia2Faculty of Medicine, University of Würzburg, Würzburg, Germany3Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Center for Infection Research (HZI), Würzburg, Germany4Department of Biology, University of Toronto Mississauga
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Inhibition of inosine metabolism of the gut microbiota decreases testosterone secretion in the testis mSystems (IF 6.4) Pub Date : 2024-03-12 Lei TangXizhong YangMengting ZhouLingxin FengCuijie JiJie LiangBei ZhangRuowu ShenLuoyang Wang1Department of Special Medicine, School of Basic Medicine, Qingdao University, Qingdao, China2Department of Spine Surgery, Qingdao Haici Medical Group, Qingdao, China3Department of Immunology, School of Basic Medicine, Qingdao University, Qingdao, China4Department of Oncology, The Affiliated Hospital of Qingdao
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The host transcriptional response to superinfection by influenza A virus and Streptococcus pneumoniae mSystems (IF 6.4) Pub Date : 2024-03-06 Ofir CohnGal YankovitzMichal MandelboimNaama Peshes-YalozRachel BrandesEran BacharachIrit Gat-Viks1The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel2Central Virology Laboratory, Ministry of Health, Chaim Sheba Medical Center, Ramat Gan, Israel3Department of Epidemiology and Preventive Medicine, Sackler Faculty of Medicine
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Linking ecosystem multifunctionality to microbial community features in rivers along a latitudinal gradient mSystems (IF 6.4) Pub Date : 2024-03-06 Miaomiao CaiCaifang ZhangCaroline Njambi NdunguGuihua LiuWenzhi LiuQuanfa Zhang1CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China2Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan, China3College of Life Sciences, University of Chinese Academy
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Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables mSystems (IF 6.4) Pub Date : 2024-03-06 Min YapOrla O'SullivanPaul W. O'TooleJeremiah J. SheehanMark A. FenelonPaul D. Cotter1Teagasc Food Research Centre, Cork, Ireland2School of Microbiology, University College Cork, Cork, Ireland3APC Microbiome Ireland, Cork, Ireland4VistaMilk SFI Research Centre, Cork, Ireland5Dairy Processing Technology Centre (DPTC), Limerick, Ireland, Jessica L. Metcalf
mSystems, Ahead of Print.
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MbovP0725, a secreted serine/threonine phosphatase, inhibits the host inflammatory response and affects metabolism in Mycoplasma bovis mSystems (IF 6.4) Pub Date : 2024-03-05 Hui ZhangYiqiu ZhangDoukun LuXi ChenYingyu ChenChangmin HuAizhen Guo1College of Animal & Veterinary Sciences, Key Laboratory of Animal Medicine of Sichuan Province, Southwest Minzu University, Chengdu, China2The State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China3Key Laboratory of Development of
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Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses mSystems (IF 6.4) Pub Date : 2024-03-05 Hiroaki TakebeKento TominagaTatsuhiro IsozakiTetsuhiro WatanabeKeigo YamamotoRyoma KamikawaTakashi Yoshida1Graduate School of Agriculture, Kyoto University, Kyoto, Japan2Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan3Research Institute of Environment, Agriculture and Fisheries, Osaka Prefecture, Osaka, Japan, Hans C. Bernstein
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Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation mSystems (IF 6.4) Pub Date : 2024-03-05 Leonardo MancabelliChristian MilaniRosita De BiaseFabiana BocchioFederico FontanaGabriele Andrea LugliGiulia AlessandriChiara TarracchiniAlice ViappianiFlora De ContoAntonio NouvenneAndrea TicinesiOvidio BussolatiTiziana MeschiRossana CecchiFrancesca TurroniMarco Ventura1Department of Medicine and Surgery, University of Parma, Parma, Italy2Interdepartmental Research Centre "Microbiome Research Hub"
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In-depth characterization of a selection of gut commensal bacteria reveals their functional capacities to metabolize dietary carbohydrates with prebiotic potential mSystems (IF 6.4) Pub Date : 2024-03-05 Cassandre Bedu-FerrariPaul BiscarratFrederic PepkeSarah VatiCyril ChaudemancheFlorence CastelliCéline CholletOlivier RuéChristelle Hennequet-AntierPhilippe LangellaClaire Cherbuy1Micalis Institute, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France2General Mills France, Boulogne Billancourt, France3Service
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Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis mSystems (IF 6.4) Pub Date : 2024-03-05 Dominika KadlečkováMartina SalákováTomáš ErbanRuth Tachezy1Department of Genetics and Microbiology, Faculty of Science BIOCEV, Charles University, Vestec, Průmyslová, Czechia2Crop Research Institute, Drnovská, Prague, Czechia, Morgan G. I. Langille
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Distinct compositions and functions of circulating microbial DNA in the peripheral blood compared to fecal microbial DNA in healthy individuals mSystems (IF 6.4) Pub Date : 2024-03-01 Taiyu ZhaiWenbo RenXufeng JiYifei WangHaizhen ChenYuting JinQiao LiangNan ZhangJing Huang1Department of Clinical Laboratory, The First Hospital of Jilin University, Changchun, China2College of Medical Technology, Beihua University, Jilin, China, James R. Brown
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Bisphenol A exposure affects specific gut taxa and drives microbiota dynamics in childhood obesity mSystems (IF 6.4) Pub Date : 2024-03-01 Ana Lopez-MorenoKlara CerkLourdes RodrigoAntonio SuarezMargarita AguileraAlicia Ruiz-Rodriguez1Department of Microbiology, Faculty of Pharmacy, University of Granada, Campus of Cartuja, Granada, Spain2Institute of Nutrition and Food Technology "José Mataix" (INYTA), Centre of Biomedical Research, University of Granada, Granada, Spain3Instituto de Investigación Biosanitaria ibs, Granada, Spain4Quadram
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Seasonality and longer-term development generate temporal dynamics in the Populus microbiome mSystems (IF 6.4) Pub Date : 2024-02-29 William A. ArgiroffAlyssa A. CarrellDawn M. KlingemanNicholas C. DoveWellington MucheroAllison M. VeachToni WahlSteven J. LebreuxAmber B. WebbKellie PeytonChristopher W. SchadtMelissa A. Cregger1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA2Department of Integrative Biology, The University of Texas, San Antonio, Texas, USA3Department of Microbiology, University of Tennessee
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New aspects characterizing non-obese NAFLD by the analysis of the intestinal flora and metabolites using a mouse model mSystems (IF 6.4) Pub Date : 2024-02-29 Wenji ZhangWenli ChengJingHui LiZhenrui HuangHui LinWenjuan Zhang1Guangdong Provincial Engineering and Technology Research Center for Tobacco Breeding and Comprehensive Utilization, Key Laboratory of Crop Genetic Improvement of Guangdong Province, Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China2Department of Public Health and Preventive Medicine, School of Medicine
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration mSystems (IF 6.4) Pub Date : 2024-02-28 Rachel D. StewartKevin S. MyersCarly AmstadtMatt SeibKatherine D. McMahonDaniel R. Noguera1Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA2Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin, USA3Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA4Madison Metropolitan
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Erratum for Kujawinski et al., “Metabolite diversity among representatives of divergent Prochlorococcus ecotypes” mSystems (IF 6.4) Pub Date : 2024-02-27 Elizabeth B. KujawinskiRogier BraakmanKrista LongneckerJamie W. BeckerSallie W. ChisholmKeven DooleyMelissa C. Kido SouleGretchen J. SwarrKathryn Halloran
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Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success mSystems (IF 6.4) Pub Date : 2024-02-27 Carly M. MorenoMargaret BernishMeredith G. MeyerZuchuan LiNicole WaiteNatalie R. CohenOscar SchofieldAdrian Marchetti1Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA2Division of Natural and Applied Science, Duke Kunshan University, Suzhou, Jiangsu, China3Department of Marine and Coastal Sciences, Rutgers University
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Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants mSystems (IF 6.4) Pub Date : 2024-02-27 Yulin ZhangYu DengChunxiao WangShuxian LiFrankie T. K. LauJizhong ZhouTong Zhang1Environmental Microbiome Engineering and Biotechnology Lab, Department of Civil Engineering, The University of Hong Kong, Hong Kong, China2Drainage Services Department, The Government of the Hong Kong Special Administrative Region of the People’s Republic of China, Wanchai, Hong Kong, China3Institute for Environmental
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Metagenomic assembled genomes indicated the potential application of hypersaline microbiome for plant growth promotion and stress alleviation in salinized soils mSystems (IF 6.4) Pub Date : 2024-02-20 Kiran DindhoriaRaghawendra KumarBhavya BhargavaRakshak Kumar1Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India2Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India, Rup Lal, Shashi Kant BhatiaMukesh Kumar Awasthi
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A novel Bartonella-like bacterium forms an interdependent mutualistic symbiosis with its host, the stored-product mite Tyrophagus putrescentiae mSystems (IF 6.4) Pub Date : 2024-02-21 Qing XiongBruno SopkoPavel B. KlimovJan Hubert1School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong, China2Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, China3Crop Research Institute, Prague, Czechia4Purdue University, Lilly Hall of Life Sciences, West Lafayette, Indiana, USA5Department of Microbiology, Nutrition and Dietetics
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Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle mSystems (IF 6.4) Pub Date : 2024-02-21 Juntao ZhongTroy OsbornThais Del Rosario HernándezOleksandr KyrysyukBenjamin J. TullyRika E. Anderson1Carleton College, Northfield, Minnesota, USA2Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, USA3Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA4Yale School of Medicine, Yale University, New Haven, Connecticut
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Massively parallel mutant selection identifies genetic determinants of Pseudomonas aeruginosa colonization of Drosophila melanogaster mSystems (IF 6.4) Pub Date : 2024-02-21 Jessica MilesGabriel L. LozanoJeyaprakash RajendhranEric V. StabbJo HandelsmanNichole A. Broderick1Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA2Graduate Program in Microbiology, Yale University, New Haven, Connecticut, USA3Department of Biological Sciences, University of Illinois Chicago, Chicago, Illinois, USA4Department of Biology, Johns
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A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer mSystems (IF 6.4) Pub Date : 2024-02-20 Jürgen TomaschKarel KopejtkaTomáš BílýAlastair T. GardinerZdenko GardianSahana ShivaramuMichal KoblížekDavid Kaftan1Laboratory of Anoxygenic Phototrophs, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czechia2Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czechia3Department Chemistry, Faculty of Science, University of South Bohemia, České
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Nanopore adaptive sampling effectively enriches bacterial plasmids mSystems (IF 6.4) Pub Date : 2024-02-20 Jens-Uwe UlrichLennard EppingTanja PilzBirgit WaltherKerstin StinglTorsten SemmlerBernhard Y. Renard1Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany2Department of Mathematics and Computer Science, Free University of Berlin, Berlin, Germany3Phylogenomics Unit, Center for Artificial Intelligence in Public Health Research, Robert Koch Institute, Wildau, Germany4Genome
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Extreme environments simplify reassembly of communities of arbuscular mycorrhizal fungi mSystems (IF 6.4) Pub Date : 2024-02-20 Nataša ŠibancDave R. ClarkThorunn HelgasonAlex J. DumbrellIrena Maček1Department of Agronomy, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia2Department of forest physiology and genetics, Slovenian Forestry Institute, Ljubljana, Slovenia3School of Life Sciences, University of Essex, Colchester, United Kingdom4Institute for Analytics and Data Science, University of Essex, Colchester
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Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli mSystems (IF 6.4) Pub Date : 2024-02-20 Rebecca J. HallAnn E. SnaithMatthew J. N. ThomasMichael A. BrockhurstAlan McNally1Institute of Microbiology and Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom2Division of Evolution and Genomic Sciences, University of Manchester, Manchester, United Kingdom, Alejandra Rodríguez-Verdugo
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A CRISPR interference system for engineering biological nitrogen fixation mSystems (IF 6.4) Pub Date : 2024-02-20 Steven J. RussellAmanda K. GarciaBetül Kaçar1Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA, Jack A. Gilbert
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Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods mSystems (IF 6.4) Pub Date : 2024-02-20 Bridget HegartyJames Riddell VEric BastienKathryn LangenfeldMorgan LindbackJaspreet S. SainiAnthony WingJessica ZhangMelissa Duhaime1Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio, USA2Department of Microbiology, The Ohio State University, Columbus, Ohio, USA3Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan
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Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia mSystems (IF 6.4) Pub Date : 2024-02-20 Ana Paula SchaanAmanda VidalAn-Ni ZhangMathilde PoyetEric J. AlmMathieu GroussinÂndrea Ribeiro-dos-Santos1Genetics and Molecular Biology Program, Universidade Federal do Pará, Belém, Pará, Brazil2Institute of Clinical Molecular Biology, Christian-Albrecht University of Kiel, Kiel, Germany3Schleswig-Holstein University Clinic, Kiel, Germany4Instituto Tecnológico Vale, Belém, Pará, Brazil5Department
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Bacteriophage specificity is impacted by interactions between bacteria mSystems (IF 6.4) Pub Date : 2024-02-20 Ave T. BisesiWolfram MöbiusCarey D. NadellEleanore G. HansenSteven D. BowdenWilliam R. Harcombe1Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota, USA2Living Systems Institute, University of Exeter, Exeter, United Kingdom3Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom4Department of Biological Sciences, Dartmouth College, Hanover
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Annotating microbial functions with ProkFunFind mSystems (IF 6.4) Pub Date : 2024-02-16 Keith Dufault-ThompsonXiaofang Jiang1National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA, Samuel Chaffron
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Interpretation of vaginal metagenomic characteristics in different types of vaginitis mSystems (IF 6.4) Pub Date : 2024-02-16 Jiarong SongXue DongYue LanYunwei LuXu LiuXuena KangZhonglu HuangBisong YueYu LiuWenjin MaLibo ZhangHaijun YanMiao HeZhenxin FanTao Guo1Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu, China2Department of Gynecology and Obstetrics, West China Second Hospital, Sichuan University, Chengdu, China3Meishan Women and Children’s
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Intestinal lysozyme1 deficiency alters microbiota composition and impacts host metabolism through the emergence of NAD+-secreting ASTB Qing110 bacteria mSystems (IF 6.4) Pub Date : 2024-02-16 Chengye ZhangChen XiangKaichen ZhouXingchen LiuGuofeng QiaoYabo ZhaoKemeng DongKe SunZhihua Liu1Institute for Immunology, School of Medicine, Tsinghua University, Beijing, China2Beijing Institute of Genomics, Chinese Academy of Sciences, China National Center for Bioinformation, Beijing, China3University of Chinese Academy of Sciences, Beijing, China4Tsinghua-Peking Center for Life Sciences, Tsinghua
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Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture mSystems (IF 6.4) Pub Date : 2024-02-16 Marina Marcet-HoubenFernando CruzJéssica Gómez-GarridoTyler S. AliotoJuan Carlos Nunez-RodriguezNebai MesanzaMarta GutEugenia IturritxaToni Gabaldon1Barcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain2Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain3Centro de Investigación Biomédica En Red de Enfermedades Infecciosas
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Genome-scale metabolic modeling of the human milk oligosaccharide utilization by Bifidobacterium longum subsp. infantis mSystems (IF 6.4) Pub Date : 2024-02-16 Loreto RománFelipe Melis-ArcosTomás PröschlePedro A. SaaDaniel Garrido1Department of Chemical and Bioprocess Engineering, School of Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile2Institute for Mathematical and Computational Engineering, Pontificia Universidad Católica de Chile, Vicuña Mackenna, Santiago, Chile, Jack A. Gilbert
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Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning mSystems (IF 6.4) Pub Date : 2024-02-13 Jonathan Josephs-SpauldingAkanksha RajputYing HefnerRichard SzubinArchana BalasubramanianGaoyuan LiDaniel C. ZielinskiLeonie JahnMorten SommerPatrick PhaneufBernhard O. Palsson1The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Copenhagen, Denmark2Department of Bioengineering, University of California, San Diego, California, USA, Danilo Ercolini
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Use of a combined antibacterial synergy approach and the ANNOgesic tool to identify novel targets within the gene networks of multidrug-resistant Klebsiella pneumoniae mSystems (IF 6.4) Pub Date : 2024-02-13 Hyunsook LeeSung-Huan YuJung Eun ShimDongeun Yong1Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, South Korea2Brain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, South Korea3Institute of Precision Medicine, College of Medicine, National Sun Yat-sen University, Kaohsiung, Taiwan4School
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Serial passage of PDCoV in cell culture reduces its pathogenicity and its damage of gut microbiota homeostasis in piglets mSystems (IF 6.4) Pub Date : 2024-02-13 Yunfei ZhangLulu SiJunlong GaoXiangli ShuCongrui QiuYue ZhangShaopo ZuHui Hu1The College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan, China2Key Laboratory for Animal-derived Food Safety of Henan Province, Zhengzhou, Henan, China3Ministry of Education Key Laboratory for Animal Pathogens and Biosafety, Zhengzhou, Henan, China, Shi Huang
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Alcohol-induced gut microbiome dysbiosis enhances the colonization of Klebsiella pneumoniae on the mouse intestinal tract mSystems (IF 6.4) Pub Date : 2024-02-12 Mengke ShenHuajie ZhaoMeiqing HanLin SuXiaojian CuiDuan LiLiang LiuChuansheng WangFan Yang1Department of Pathogenic Biology, School of Basic Medical Science, Xinxiang Medical University, Xinxiang, China2Department of Pathogenic Biology and Immunology, Sanquan College of Xinxiang Medical University, Xinxiang, China3The Second Affiliated Hospital of Xinxiang Medical University, Henan Key Laboratory of
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The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome mSystems (IF 6.4) Pub Date : 2024-02-08 Kai Zhan Haomeng Wu Yongyin Xu Kehan Rao Huan Zheng Shumin Qin Yuanming Yang Rui Jia Weihuan Chen Shaogang Huang 1 Dongguan Hospital of Guangzhou University of Chinese Medicine , Dongguan, China 2 The Second Clinical College of Guangzhou University of Chinese Medicine , Guangzhou, China 3 State Key Laboratory of Dampness Syndrome of Chinese Medicine, The Second Affiliated Hospital of Guangzhou University
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Snowball: a novel gene family required for developmental patterning of fruiting bodies of mushroom-forming fungi (Agaricomycetes) mSystems (IF 6.4) Pub Date : 2024-02-09 Csenge FöldiZsolt MerényiBálint BalázsÁrpád CserneticsNikolett MiklovicsHongli WuBotond HegedüsMáté VirághZhihao HouXiao-Bin LiuLászló GalgóczyLászló G. Nagy1Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Center, Szeged, Hungary2Doctoral School of Biology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary3Department of Biotechnology
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The adaptation of bumblebees to extremely high elevation associated with their gut microbiota mSystems (IF 6.4) Pub Date : 2024-02-08 Jiu-Hong DongXin XuZong-Xin RenYan-Hui ZhaoYaran ZhangLi ChenYou WuGuotao ChenRuiqing CaoQi WuHong Wang1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China2CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China3University of Chinese Academy of Sciences, Beijing
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A novel mechanism for dissimilatory nitrate reduction to ammonium in Acididesulfobacillus acetoxydans mSystems (IF 6.4) Pub Date : 2024-02-07 Reinier A. EgasJulia M. KurthSjef BoerenDiana Z. SousaCornelia U. WelteIrene Sánchez-Andrea1Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands2Microcosm Earth Centre, Philipps-Universität Marburg & Max Planck Institute for Terrestrial Microbiology, Marburg, Germany3Laboratory of Biochemistry, Wageningen University & Research, Wageningen, The Netherlands4Centre
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A Porphyromonas gingivalis hypothetical protein controlled by the type I-C CRISPR-Cas system is a novel adhesin important in virulence mSystems (IF 6.4) Pub Date : 2024-02-07 Muhammad IrfanJose SolbiatiAna Duran-PinedoFernanda Godoy RochaFrank C. GibsonJorge Frias-Lopez1Department of Oral Biology, College of Dentistry, University of Florida, Gainesville, Florida, USA2Department of Periodontology, College of Dentistry, University of Florida, Gainesville, Florida, USA, Tricia A. Van Laar
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Multi-omics analysis reveals the associations between altered gut microbiota, metabolites, and cytokines during pregnancy mSystems (IF 6.4) Pub Date : 2024-02-07 Ting HuangXinyuan LiangHan BaoGuangyu MaXiaomei TangHuijuan LuoXiaomin Xiao1Department of Obstetrics and Gynecology, The First Affiliated Hospital of Jinan University, Guangzhou, China2Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China, Vanni Bucci
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Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440 mSystems (IF 6.4) Pub Date : 2024-02-07 Andrew J. BorchertAlissa C. BleemHyun Gyu LimKevin RychelKeven D. DooleyZoe A. KellermyerTracy L. HodgesBernhard O. PalssonGregg T. Beckham1Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA2Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA3Agile BioFoundry, Emeryville, California, USA4Department of Bioengineering
mSystems, Ahead of Print.
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Model-guided metabolic rewiring to bypass pyruvate oxidation for pyruvate derivative synthesis by minimizing carbon loss mSystems (IF 6.4) Pub Date : 2024-02-05 Yun ZhangXueliang WangChristianah OdesanmiQitiao HuDandan LiYuan TangZhe LiuJie MiShuwen LiuTingyi Wen1State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China2College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China3Savaid Medical School, University of Chinese Academy of Sciences, Beijing, China, Jack A. Gilbert
mSystems, Ahead of Print.
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Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing mSystems (IF 6.4) Pub Date : 2024-02-06 Dmitry GrinevichLyndy HardenSiddhartha ThakurBenjamin Callahan1Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, USA2Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, USA, Morgan G. I. Langille
mSystems, Ahead of Print.
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Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis mSystems (IF 6.4) Pub Date : 2024-02-06 Paulo Wender P. GomesHelena Mannochio-RussoJunhong MaoHaoqi Nina ZhaoJacob AnciraCraig D. TiptonPieter C. DorresteinMin Li1Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA2Colgate−Palmolive Company, Piscataway, New Jersey, USA3RTL Genomics, MicroGenDX, Lubbock, Texas, USA4Department
mSystems, Ahead of Print.
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High-fat diet feeding exacerbates HIV-1 rectal transmission mSystems (IF 6.4) Pub Date : 2024-02-02 Saroj Chandra LohaniAmanda E. Ramer-TaitQingsheng Li1School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA2Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA3Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA4Nebraska Food for Health Center, University of Nebraska-Lincoln, Lincoln, Nebraska
mSystems, Ahead of Print.
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Multi-omics analyses reveal rumen microbes and secondary metabolites that are unique to livestock species mSystems (IF 6.4) Pub Date : 2024-01-31 Victor O. OmondiGeoffrey O. BosireJohn M. OnyariCaleb KibetSamuel MwasyaVanessa N. OnyonyiMerid N. Getahun1Animal Health Theme and Behavioural and Chemical Ecology Unit, International Centre of Insect Physiology and Ecology (icipe), Nairobi, Kenya2Department of Chemistry, University of Nairobi (U.o.N), Nairobi, Kenya, James R. Brown
mSystems, Ahead of Print.
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Utilization of nanopore direct RNA sequencing to analyze viral RNA modifications mSystems (IF 6.4) Pub Date : 2024-01-31 Lu TanZhihao GuoXiaoming WangDal Young KimRunsheng Li1Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong, China2College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, China3Tung Biomedical Sciences Centre, City University of Hong Kong, Hong Kong, China, Pedro H. Oliveira
mSystems, Ahead of Print.