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Identification of chemical compounds regulating PD‐L1 by introducing HiBiT‐tagged cells FEBS Lett. (IF 3.057) Pub Date : 2021-01-09 Yutaro Uchida; Takahide Matsushima; Ryota Kurimoto; Tomoki Chiba; Yuki Inutani; Hiroshi Asahara
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Coding triplets in the tRNA acceptor‐TΨC arm and their role in present and past tRNA recognition FEBS Lett. (IF 3.057) Pub Date : 2021-01-18 Ilana Agmon; Itay Fayerverker; Tal Mor
The mechanism and evolution of the recognition scheme between key components of the translation system, i.e., tRNAs, synthetases and elongation factors, are fundamental issues in understanding the translation of genetic information into proteins. Statistical analysis of bacterial tRNA sequences reveals that for six amino acids, a string of 10 nucleotides preceding the tRNA 3’end, carries cognate coding
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Adhesion‐dependent Caveolin‐1 Tyrosine‐14 phosphorylation is regulated by FAK in response to changing matrix stiffness FEBS Lett. (IF 3.057) Pub Date : 2020-12-12 Natasha Buwa; Nivedhika Kannan; Shaunak Kanade; Nagaraj Balasubramanian
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15‐Deoxy‐Δ12,14‐prostaglandin J2 binds and inactivates STAT3 via covalent modification of cysteine 259 in H‐Ras transformed human breast epithelial cells FEBS Lett. (IF 3.057) Pub Date : 2021-01-16 Su‐Jung Kim; Nam‐Chul Cho; Bitnara Han; Kyeojin Kim; Young‐Il Hahn; Kwang Pyo Kim; Young Ger Suh; Bu‐Young Choi; Hye‐Kyung Na; Young‐Joon Surh
STAT3 has been considered as a potential target for development of anti‐cancer therapeutics. Here, we report a novel mechanism by which the cyclopentenone prostaglandin,15‐deoxy‐Δ12,14‐prostaglandin J2 (15d‐PGJ2) functions as an allosteric inhibitor of STAT3. 15d‐PGJ2 inhibits phosphorylation, dimerization, nuclear translocation, and transcriptional activity of STAT3 in H‐Ras‐transformed human mammary
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The endolysosomal adaptor PLEKHM1 is a direct target for both mTOR and MAPK pathways FEBS Lett. (IF 3.057) Pub Date : 2021-01-16 Andrea Gubas; Christina Karantanou; Doris Popovic; Georg Tascher; Marina E. Hoffmann; Anna Platzek; Nina Dawe; Ivan Dikic; Daniela S. Krause; David.G McEwan
The lysosome is a cellular signalling hub at the point of convergence of endocytic and autophagic pathways, where the contents are degraded and recycled. Pleckstrin homology domain‐containing family member 1 (PLEKHM1) acts as an adaptor to facilitate the fusion of endocytic and autophagic vesicles with the lysosome. However, it is unclear how PLEKHM1 function at the lysosome is controlled. Herein,
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Mitochondrial proteases in human diseases FEBS Lett. (IF 3.057) Pub Date : 2021-01-16 Maria Gomez‐Fabra Gala; F.‐Nora Vögtle
Mitochondria contain more than 1000 different proteins, including several proteolytic enzymes. These mitochondrial proteases form a complex system that performs limited and terminal proteolysis to build the mitochondrial proteome, maintain and control its functions or degrade mitochondrial proteins and peptides. During protein biogenesis presequence proteases cleave and degrade mitochondrial targeting
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Dynamics and electrostatics define an allosteric druggable site within the receptor‐binding domain of SARS‐CoV2 spike protein FEBS Lett. (IF 3.057) Pub Date : 2021-01-15 Sayan Bhattacharjee; Rajanya Bhattacharyya; Jayati Sengupta
The pathogenesis of the SARS‐CoV2 virus initiates through recognition of the angiotensin‐converting enzyme 2 (ACE2) receptor of the host cells by the receptor‐binding domain (RBD) located at the spikes of the virus. Here, using molecular dynamics (MD) simulations, we have demonstrated the allosteric crosstalk within the RBD in the apo‐ and the ACE2 receptor‐bound states, revealing the contribution
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Ring assembly of c subunits of F0F1‐ATP synthase in Propionigenium modestum requires YidC and UncI following MPIase‐dependent membrane insertion FEBS Lett. (IF 3.057) Pub Date : 2021-01-10 Hanako Nishikawa; Kotoka Kanno; Yuta Endo; Ken‐ichi Nishiyama
The c subunits of F0F1‐ATP synthase (F0c) assemble into a ring structure, following membrane insertion that is dependent on both glycolipid MPIase and protein YidC. We analyzed the insertion and assembly processes of Propionigenium modestum F0c (Pm‐F0c), of which the ring structure is resistant to SDS. Ring assembly of Pm‐F0c requires P. modestum UncI (Pm‐UncI). Ring assembly of in vitro synthesized
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Elf4 regulates lysosomal biogenesis and the mTOR pathway to promote clearance of Staphylococcus aureus in macrophages FEBS Lett. (IF 3.057) Pub Date : 2021-01-10 Yanhua Kang; Tingyue Wu; Yan He; Yunfan He; Dongjiu Zhao
Staphylococcus aureus (S. aureus) is a major cause of infectious disease. Macrophages can directly destroy most of the invading bacteria through the phagolysosomal pathway. E74‐like factor 4 (Elf4) is one of the important transcription factors that controls diverse pathogens, but the role of Elf4 in macrophage‐mediated S. aureus eradication is unknown. Our data show that Elf4 is induced by S. aureus
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Fanconi anemia and mTOR pathways functionally interact during stalled replication fork recovery FEBS Lett. (IF 3.057) Pub Date : 2021-01-10 Matthew Nolan; Kenneth Knudson; Marina K. Holz; Indrajit Chaudhury
We have previously demonstrated that Fanconi Anemia (FA) proteins work in concert with other FA and non‐FA proteins to mediate stalled replication fork restart. Previous studies suggest a connection between the FA protein FANCD2 and the non‐FA protein mechanistic target of rapamycin (mTOR). A recent study showed that mTOR is involved in actin‐dependent DNA replication fork restart, suggesting possible
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AP‐1 and NF‐κB synergize to transcriptionally activate latent HIV upon T‐cell receptor activation FEBS Lett. (IF 3.057) Pub Date : 2021-01-09 Joseph Hokello; Adhikarimayum Lakhikumar Sharma; Mudit Tyagi
Latent HIV‐1 proviruses are capable of reactivating productive lytic infection, but the precise molecular mechanisms underlying emergence from latency are poorly understood. In this study, we determined the contribution of the transcription factors NF‐κB, NFAT, and AP‐1 in the reactivation of latent HIV following T‐cell receptor (TCR) activation using Jurkat T‐cell clones harboring single latent HIV
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NRG/ErbB signaling regulates neonatal muscle growth but not neuromuscular contractures in neonatal brachial plexus injury FEBS Lett. (IF 3.057) Pub Date : 2021-01-09 Brendan L Ho; Qingnian Goh; Sia Nikolaou; Liangjun Hu; Kritton Shay‐Winkler; Roger Cornwall
Neonatal brachial plexus injury (NBPI) causes disabling and incurable muscle contractures that are driven by impaired growth of denervated muscles. A rare form of NBPI, which maintains afferent muscle innervation despite motor denervation, does not cause contractures. As afferent innervation regulates various aspects of skeletal muscle homeostasis through NRG/ErbB signaling, our current study investigated
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Ubiquitin‐independent proteasomal degradation of Spindlin‐1 by the E3 ligase HACE1 contributes to cell‐cell adhesion FEBS Lett. (IF 3.057) Pub Date : 2021-01-09 Vivek Reddy Palicharla; Devanshi Gupta; Debjani Bhattacharya; Subbareddy Maddika
HECT‐E3 ligases play an essential role in catalyzing the transfer of ubiquitin to protein substrates. The non‐catalytic roles of HECT‐E3 ligases in cells are unknown. Here, we report that a HECT‐E3 ligase, HACE1, functions as an adaptor independent of its E3 ligase activity. We identified Spindlin‐1, a histone reader, as a new HACE1‐associated protein. Interestingly, we found that HACE1 promotes Spindlin‐1
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Global Analysis of RNA–Protein Interactions in TNF‐α Induced Alternative Splicing in Metabolic Disorders FEBS Lett. (IF 3.057) Pub Date : 2021-01-08 Jiss Maria Louis; Arjun Agarwal; Raviprasad Aduri; Indrani Talukdar
In this report, using the database of RNA‐binding protein specificities (RBPDB) and our previously published RNA‐seq data, we analyzed RNA–RNA‐binding protein (RBP) interactions to decipher the role of alternative splicing in metabolic disorders induced by TNF‐α. We identified 13,395 unique RNA–RBP interactions, including 385 unique RNA motifs and 35 RBPs, some of which (including MBNL‐1 and 3, ZFP36
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The coordinated action of glucuronoyl esterase and α‐glucuronidase promotes the disassembly of lignin–carbohydrate complexes FEBS Lett. (IF 3.057) Pub Date : 2020-12-04 Olanrewaju Raji; Jenny Arnling Bååth; Thu V. Vuong; Johan Larsbrink; Lisbeth Olsson; Emma R. Master
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The high‐resolution X‐ray structure of vinca‐domain inhibitors of microtubules provides a rational approach for drug design FEBS Lett. (IF 3.057) Pub Date : 2020-11-21 Wu Chengyong; Xian Jinghong; Wang Yanyan; Xiao Qing‐Jie; Ma Lingling; Li Yuyan; Chen Hai; Lei Qian; Zhang Quan; Sun Bo; Wang Yuxi
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Single‐molecule studies of conformational states and dynamics in the ABC importer OpuA FEBS Lett. (IF 3.057) Pub Date : 2020-12-12 Konstantinos Tassis; Ruslan Vietrov; Matthijs de Koning; Marijn de Boer; Giorgos Gouridis; Thorben Cordes
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Cytosolic PINK1 orchestrates protein translation during proteasomal stress by phosphorylating the translation elongation factor eEF1A1 FEBS Lett. (IF 3.057) Pub Date : 2020-12-23 Siyue Qin; Ling Ye; Youshi Zheng; Ju Gao
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Identification and characterization of the hemoglobin‐binding domain of hemoglobin receptor in Leishmania FEBS Lett. (IF 3.057) Pub Date : 2020-12-14 Ruchir Rastogi; Jitender Kumar Verma; Vijay Singh; Ganga Krishnamurthy; Chandni Sood; Anjali Kapoor; Kamal Kumar; Irshad Ansari; Amitabha Mukhopadhyay
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Why do pathway methods work better than they should? FEBS Lett. (IF 3.057) Pub Date : 2020-12-03 Bence Szalai; Julio Saez‐Rodriguez
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G Protein‐Coupled receptors and heterotrimeric G proteins as cancer drivers FEBS Lett. (IF 3.057) Pub Date : 2020-12-03 Nadia Arang; J. Silvio Gutkind
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Negative feedback and modern anti‐cancer strategies targeting the ER stress response FEBS Lett. (IF 3.057) Pub Date : 2020-11-18 Yaofu Liu; Zhenzhi Tan; Yili Yang
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Mitochondrial DNA copy number in human disease: the more the better? FEBS Lett. (IF 3.057) Pub Date : 2020-12-12 Roberta Filograna; Mara Mennuni; David Alsina; Nils‐Göran Larsson
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Bone morphogenetic protein 9 (BMP9) directly induces Notch effector molecule Hes1 through the SMAD signaling pathway in osteoblasts FEBS Lett. (IF 3.057) Pub Date : 2020-12-02 Chang‐Hwan Seong; Norika Chiba; Joji Kusuyama; Muhammad Subhan Amir; Nahoko Eiraku; Sachiko Yamashita; Tomokazu Ohnishi; Norifumi Nakamura; Tetsuya Matsuguchi
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The Diseased Mitoribosome FEBS Lett. (IF 3.057) Pub Date : 2020-12-12 Alberto Ferrari; Samuel Del’Olio; Antoni Barrientos
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Chemical effects on dye efflux activity in live zebrafish embryos and on zebrafish Abcb4 ATPase activity FEBS Lett. (IF 3.057) Pub Date : 2020-12-03 Flavia Bieczynski; Kathleen Burkhardt‐Medicke; Carlos M. Luquet; Stefan Scholz; Till Luckenbach
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Different recognition modes of G‐quadruplex RNA between two ALS/FTLD‐linked proteins TDP‐43 and FUS FEBS Lett. (IF 3.057) Pub Date : 2020-12-02 Akira Ishiguro; Akira Katayama; Akira Ishihama
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Halophilic to mesophilic adaptation of ubiquitin‐like proteins FEBS Lett. (IF 3.057) Pub Date : 2020-12-10 Quan Li; Mengqing Li; Cong Li; Xinxin Li; Chenghui Lu; Xiaoming Tu; Zhiyong Zhang; Xuecheng Zhang
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Insertion loop‐mediated folding propagation governs efficient maturation of hyperthermophilic Tk‐subtilisin at high temperatures FEBS Lett. (IF 3.057) Pub Date : 2020-12-12 Ryo Uehara; Nanako Dan; Hiroshi Amesaka; Takuya Yoshizawa; Yuichi Koga; Shigenori Kanaya; Kazufumi Takano; Hiroyoshi Matsumura; Shun‐ichi Tanaka
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Mitochondrial disorders of the OXPHOS system FEBS Lett. (IF 3.057) Pub Date : 2020-11-07 Erika Fernandez‐Vizarra; Massimo Zeviani
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Cryo‐EM of ABC transporters: an ice‐cold solution to everything? FEBS Lett. (IF 3.057) Pub Date : 2020-11-06 Dovile Januliene; Arne Moeller
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Structures of ABC transporters: handle with care FEBS Lett. (IF 3.057) Pub Date : 2020-10-24 Oded Lewinson; Cédric Orelle; Markus A. Seeger
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The role of the degenerate nucleotide binding site in type I ABC exporters FEBS Lett. (IF 3.057) Pub Date : 2020-11-12 Thomas Stockner; Ralph Gradisch; Lutz Schmitt
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From in vitro towards in situ: structure‐based investigation of ABC exporters by electron paramagnetic resonance spectroscopy FEBS Lett. (IF 3.057) Pub Date : 2020-11-20 Enrica Bordignon; Markus A. Seeger; Laura Galazzo; Gianmarco Meier
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Evolutionary history of ATP‐binding cassette proteins FEBS Lett. (IF 3.057) Pub Date : 2020-11-03 Sriram Srikant
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Self‐immunity to antibacterial peptides by ABC transporters FEBS Lett. (IF 3.057) Pub Date : 2020-10-11 Sander H.J. Smits; Lutz Schmitt; Konstantinos Beis
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Transcription factors and ABC transporters: from pleiotropic drug resistance to cellular signaling in yeast FEBS Lett. (IF 3.057) Pub Date : 2020-10-22 Evan R. Buechel; Heather W. Pinkett
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An inventory of lysosomal ABC transporters FEBS Lett. (IF 3.057) Pub Date : 2020-10-24 Gergely Szakacs; Rupert Abele
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A twist in the ABC: regulation of ABC transporter trafficking and transport by FK506‐binding proteins FEBS Lett. (IF 3.057) Pub Date : 2020-10-30 Markus Geisler; Tamás Hegedűs
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Looking back at multidrug resistance (MDR) research and ten mistakes to be avoided when writing about ABC transporters in MDR FEBS Lett. (IF 3.057) Pub Date : 2020-10-28 Piet Borst
This paper presents a personal, selective, and sometimes critical retrospective of the history of ABC transporters in multidrug resistance (MDR) of cancer cells, overrepresenting discoveries of some early pioneers, long forgotten, and highlights of research in Amsterdam, mainly focussing on discoveries made with disruptions of ABC genes in mice (KO mice) and on the role of ABC transporters in causing
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The first intracellular loop is essential for the catalytic cycle of the human ABCG2 multidrug resistance transporter FEBS Lett. (IF 3.057) Pub Date : 2020-11-09 Narakorn Khunweeraphong; Karl Kuchler
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Strategies for cystic fibrosis transmembrane conductance regulator inhibition: from molecular mechanisms to treatment for secretory diarrhoeas FEBS Lett. (IF 3.057) Pub Date : 2020-10-28 Hugo R. de Jonge; Maria C. Ardelean; Marcel J. C. Bijvelds; Paola Vergani
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From membrane to mineralization: the curious case of the ABCC6 transporter FEBS Lett. (IF 3.057) Pub Date : 2020-11-01 Shana Verschuere; Matthias Van Gils; Lukas Nollet; Olivier M. Vanakker
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Mass spectrometry‐based abundance atlas of ABC transporters in human liver, gut, kidney, brain and skin FEBS Lett. (IF 3.057) Pub Date : 2020-10-31 Zubida M. Al‐Majdoub; Brahim Achour; Narciso Couto; Martyn Howard; Yasmine Elmorsi; Daniel Scotcher; Sarah Alrubia; Eman El‐Khateeb; Areti‐Maria Vasilogianni; Noura Alohali; Sibylle Neuhoff; Lutz Schmitt; Amin Rostami‐Hodjegan; Jill Barber
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Disruption of small molecule transporter systems by Transporter‐Interfering Chemicals (TICs) FEBS Lett. (IF 3.057) Pub Date : 2020-11-22 Sascha C.T. Nicklisch; Amro Hamdoun
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Mitochondrial Protein Import Dysfunction: Mitochondrial disease, Neurodegenerative Disease and Cancer FEBS Lett. (IF 3.057) Pub Date : 2020-12-14 Catherine S. Palmer; Alexander J. Anderson; Diana Stojanovski
The majority of proteins localised to mitochondria are encoded by the nuclear genome, with approximately 1500 proteins imported into mammalian mitochondria. Dysfunction in this fundamental cellular process is linked to a variety of pathologies including neuropathies, cardiovascular disorders, myopathies, neurodegenerative diseases and cancer, demonstrating the importance of mitochondrial protein import
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Identification of the fatty acid coenzyme‐A ligase FadD1 as an interacting partner of FptX in the Pseudomonas aeruginosa pyochelin pathway FEBS Lett. (IF 3.057) Pub Date : 2020-12-01 Béatrice Roche; Gaëtan L. A. Mislin; Isabelle J. Schalk
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A structural model of the PriB–DnaT complex in Escherichia coli replication restart FEBS Lett. (IF 3.057) Pub Date : 2020-12-04 Yoshito Abe; Yohei Ikeda; Saki Fujiyama; R. Manjunatha Kini; Tadashi Ueda
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The proteasome: friend and foe of mitochondrial biogenesis FEBS Lett. (IF 3.057) Pub Date : 2020-11-28 Lena Krämer; Carina Groh; Johannes M. Herrmann
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ABCB1/MDR1/P‐gp employs an ATP‐dependent twist‐and‐squeeze mechanism to export hydrophobic drugs FEBS Lett. (IF 3.057) Pub Date : 2020-12-04 Atsushi Kodan; Ryota Futamata; Yasuhisa Kimura; Noriyuki Kioka; Toru Nakatsu; Hiroaki Kato; Kazumitsu Ueda
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Circadian Rheb oscillation alters the dynamics of hepatic mTORC1 activity and mitochondrial morphology FEBS Lett. (IF 3.057) Pub Date : 2020-11-28 Qiuyun Yuan; Mina Chen; Wanchun Yang; Bo Xiao
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Identification of two subtilisin‐like serine proteases engaged in the degradation of recombinant proteins in Nicotiana benthamiana FEBS Lett. (IF 3.057) Pub Date : 2020-12-01 Alejandro A. Puchol Tarazona; Daniel Maresch; Annette Grill; Janet Bakalarz; Juan A. Torres Acosta; Alexandra Castilho; Herta Steinkellner; Lukas Mach
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Conformational changes in the nucleotide‐binding domains of P‐glycoprotein induced by ATP hydrolysis FEBS Lett. (IF 3.057) Pub Date : 2020-11-07 Sepehr Dehghani‐Ghahnaviyeh; Karan Kapoor; Emad Tajkhorshid
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mTORC1‐mediated amino acid signaling is critical for cell fate determination under transplant‐induced stress FEBS Lett. (IF 3.057) Pub Date : 2020-11-29 Xiaoyan Cheng; Maolin Ge; Shouhai Zhu; Dan Li; Ruiheng Wang; Qiongyu Xu; Zhihong Chen; Shufeng Xie; Han Liu
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The ubiquitin ligase RNF8 regulates Rho GTPases and promotes cytoskeletal changes and motility in triple‐negative breast cancer cells FEBS Lett. (IF 3.057) Pub Date : 2020-11-17 Bruno Pereira De Carvalho; Yi‐Jye Chern; Jiabei He; Chia‐Hsin Chan
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Munc13 binds and recruits SNAP25 to chaperone SNARE complex assembly FEBS Lett. (IF 3.057) Pub Date : 2020-11-22 Ramalingam Venkat Kalyana Sundaram; Huaizhou Jin; Feng Li; Tong Shu; Jeff Coleman; Jie Yang; Frederic Pincet; Yongli Zhang; James E. Rothman; Shyam S. Krishnakumar