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Folding of class IIa HDAC derived peptides into α-helices upon binding to myocyte enhancer factor-2 in complex with DNA J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-16 Monica Chinellato, Stefano Perin, Alberto Carli, Luana Lastella, Barbara Biondi, Giuseppe Borsato, Eros Di Giorgio, Claudio Brancolini, Laura Cendron, Alessandro Angelini
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CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-16 Keeley W. Collins, Matthew M. Copeland, Guillaume Brysbaert, Shoshana J. Wodak, Alexandre M.J.J. Bonvin, Petras J. Kundrotas, Ilya A. Vakser, Marc F. Lensink
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PrimPol variant V102A with altered primase and polymerase activities J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-15 O. Boldinova Elizaveta, G. Baranovskiy Andrey, V. Filina Yulia, R. Miftakhova Regina, F. Shamsutdinova Yana, H. Tahirov Tahir, Alena V. Makarova
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Membrane atg8ylation in Canonical and Noncanonical Autophagy J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-12 Vojo Deretic, Thabata Duque, Einar Trosdal, Masroor Paddar, Ruheena Javed, Prithvi Akepati
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ModFOLD9: A Web Server for Independent Estimates of 3D Protein Model Quality J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-11 Liam J. McGuffin, Shuaa M.A. Alharbi
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Leaf Senescence Database v5.0: A Comprehensive Repository for Facilitating Plant Senescence Research J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-09 Yaning Zhao, Yang Zhang, Shichun Li, Shuya Tan, Jie Cao, Hou-Ling Wang, Jingchu Luo, Hongwei Guo, Zhang Zhang, Zhonghai Li
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A Commentary on Multi-omics Data Integration in Systems Vaccinology J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-07 Casey P Shannon, Amy HY Lee, Scott J Tebbutt, Amrit Singh
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Anthrax Toxin: Model System for Studying Protein Translocation J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-07 Bryan A. Krantz
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BeetleAtlas: An Ontogenetic and Tissue-specific Transcriptomic Atlas of the Red Flour Beetle Tribolium castaneum J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-06 David P. Leader, Muhammad T. Naseem, Kenneth V. Halberg
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TPPU_DSF: A Web Application to Calculate Thermodynamic Parameters Using DSF Data J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-06 Pau Martin-Malpartida, Carles Torner, Aurora Martinez, Maria J. Macias
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MVAR: A Mouse Variation Registry J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-06 Bahá El Kassaby, Francisco Castellanos, Matthew Gerring, Govindarajan Kunde-Ramamoorthy, Carol J. Bult
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Highly Reactive Group I Introns Ubiquitous in Pathogenic Fungi J. Mol. Biol. (IF 5.6) Pub Date : 2024-03-05 Tianshuo Liu, Anna Marie Pyle
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Control of Munc13-1 Activity by Autoinhibitory Interactions Involving the Variable N-terminal Region J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-28 Junjie Xu, Victoria Esser, Katarzyna Gołębiowska-Mendroch, Agnieszka A. Bolembach, Josep Rizo
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The Protein Scaffolding Functions of Polyphosphate J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-27 Jian Guan, Ursula Jakob
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Skp2-Cyclin A Interaction Is Necessary for Mitotic Entry and Maintenance of Diploidy J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-27 Biju Vasavan, Nilanjana Das, Paria Kahnamouei, Chantelle Trombley, Andrew Swan
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The α-crystallin chaperones undergo a quasi-ordered co-aggregation process in response to saturating client interaction J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-23 Adam P. Miller, Susan E. O'Neill, Kirsten J. Lampi, Steve L. Reichow
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Deciphering Cholesterol's Role in PD-L2 Stability: a Distinct Regulatory Mechanism from PD-L1 J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-22 Yu Zhang, Taoran Xiao, Maorong Wen, Lijuan Shen, Lingyu Du, Shukun Wei, Bin Wu, Yang Yu, Shuqing Wang, Bo OuYang
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Interpreting Combinatorial Epigenetic Modifications for Biological Meaning J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-22 Shannon M Lauberth, Tatiana G Kutateladze, Joshua C Black
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Troponin Structural Dynamics in the Native Cardiac Thin Filament Revealed by Cryo Electron Microscopy J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-20 Cristina M. Risi, Betty Belknap, Jennifer Atherton, Isabella Leite Coscarella, Howard D. White, P. Bryant Chase, Jose R. Pinto, Vitold E. Galkin
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Corrigendum to “Novel LRR-ROC Motif That Links the N- and C-terminal Domains in LRRK2 Undergoes an Order–Disorder Transition Upon Activation” [J. Mol. Biol. 435(12) (2023) 1–17] J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-17 Jui-Hung Weng, Chiara R. Trilling, Pallavi Kaila Sharma, Eliza Störmer, Jian Wu, Friedrich W. Herberg, Susan S. Taylor
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E-pRSA: Embeddings improve the prediction of residue Relative Solvent Accessibility in protein sequence J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-15 Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
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Mechanisms of Translation-coupled Quality Control J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-15 Toshifumi Inada, Roland Beckmann
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Loss of Preproinsulin Interaction with Signal Recognition Particle Activates Protein Quality Control, Decreasing mRNA Stability J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-14 Sarah C. Miller, Elena B. Tikhonova, Sarah M. Hernandez, Jannette M. Dufour, Andrey L. Karamyshev
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Short Peptide Amyloids Are a Potential Sequence Pool for the Emergence of Proteins J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-14 Witek Kwiatkowski, Jason Greenwald, Laura Murzakhmetov, Robert C. Robinson, Roland Riek
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Rapid Long-distance Migration of RPA on Single Stranded DNA Occurs Through Intersegmental Transfer Utilizing Multivalent Interactions J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-14 Sushil Pangeni, Gargi Biswas, Vikas Kaushik, Sahiti Kuppa, Olivia Yang, Chang-Ting Lin, Garima Mishra, Yaakov Levy, Edwin Antony, Taekjip Ha
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Molecular insights into aggrephagy: Their cellular functions in the context of neurodegenerative diseases J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-14 Valentín Cóppola Segovia, Fulvio Reggiori
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Folded Alpha Helical Putative New Proteins from Apilactobacillus kunkeei J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-13 Weihua Ye, Phani Rama Krishna Behra, Karl Dyrhage, Christian Seeger, Joe D. Joiner, Elin Karlsson, Eva Andersson, Celestine N. Chi, Siv G.E. Andersson, Per Jemth
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Synonymous Mutations Can Alter Protein Dimerization Through Localized Interface Misfolding Involving Self-entanglements J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-09 Pham Dang Lan, Daniel Allen Nissley, Ian Sitarik, Quyen V. Vu, Yang Jiang, Philip To, Yingzi Xia, Stephen D. Fried, Mai Suan Li, Edward P. O'Brien
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Photosensory Receptors – Mechanisms and Effects J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-09 Volha U. Chukhutsina, John T.M. Kennis
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Assembly of Protein Complexes in and on the Membrane with Predicted Spatial Arrangement Constraints J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-08 Charles Christoffer, Kannan Harini, Gupta Archit, Daisuke Kihara
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Cryo-EM Structures of CRAF2/14-3-32 and CRAF2/14-3-32/MEK12 Complexes J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-07 Dirk Dedden, Julius Nitsche, Elisabeth V. Schneider, Maren Thomsen, Daniel Schwarz, Birgitta Leuthner, Ulrich Grädler
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Role of J-domain Proteins in Yeast Physiology and Protein Quality Control J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-07 Carmen Ruger-Herreros, Lucia Svoboda, Axel Mogk, Bernd Bukau
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Chi hotspot Control of RecBCD Helicase-nuclease: Enzymatic Tests Support the Intramolecular Signal-transduction Model J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-07 Susan K. Amundsen, Gerald R. Smith
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Establishing Order through Disorder by the Hsp90 Molecular Chaperone J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-30 Neethu Babu, Brian C. Freeman
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Supersaturation, a Critical Factor Underlying Proteostasis of Amyloid Fibril Formation J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-03 Yuji Goto, Kichitaro Nakajima, Suguru Yamamoto, Keiichi Yamaguchi
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Impact of Membrane Phospholipids and Exosomes on the Kinetics of Amyloid-β Fibril Assembly J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-03 Anum Khursheed, John H Viles
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Physiological functions of ULK1/2 J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-02 Gautam Pareek, Mondira Kundu
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Structural Basis for Coronaviral Main Proteases Inhibition by the 3CLpro Inhibitor GC376 J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-02 Cheng Lin, Zhimin Zhu, Haihai Jiang, Xiaofang Zou, Xiangyi Zeng, Jie Wang, Pei Zeng, Wenwen Li, Xuelan Zhou, Jin Zhang, Qisheng Wang, Jian Li
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Regulation and Functions of Autophagy During Animal Development J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-02 Lucas J. Restrepo, Eric H. Baehrecke
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The Carbonyl Group in β2 of the Carotenoid Tunes the Photocycle Kinetics in Orange Carotenoid Protein J. Mol. Biol. (IF 5.6) Pub Date : 2024-02-02 Volha U. Chukhutsina, Christopher D.M. Hutchison, Jasper J. van Thor
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Mechanistic Modeling of Amyloid Oligomer and Protofibril Formation in Bovine Insulin J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-30 Keisuke Yuzu, Hiroshi Imamura, Takuro Nozaki, Yuki Fujii, Shaymaa Mohamed Mohamed Badawy, Ken Morishima, Aya Okuda, Rintaro Inoue, Masaaki Sugiyama, Eri Chatani
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The Bacterial Proteasome Inter-domain Is a Selectivity Barrier for Degradation-tag Binding J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-30 Zohar Mor-Rashti, Roni Levin, Jerry Eichler, Eyal Gur
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Non-covalent Lasso Entanglements in Folded Proteins: Prevalence, Functional Implications, and Evolutionary Significance J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-30 Viraj Rana, Ian Sitarik, Justin Petucci, Yang Jiang, Hyebin Song, Edward P. O'Brien
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Conserved signal transduction mechanisms and dark recovery kinetic tuning in the Pseudomonadaceae short light, oxygen, voltage (LOV) protein family J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-26 Vladimir Arinkin, Joachim Granzin, Karl-Erich Jaeger, Dieter Willbold, Ulrich Krauss, Renu Batra-Safferling
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Mechanisms of PAS domain signalling, from sensing varied small molecules and peptides to approved pharmaceuticals and use in optogenetics J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-24 Sepideh Khorasanizadeh, Kevin H. Gardner
Abstract not available
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Phase Variation of Flagella and Toxins in Clostridioides difficile is Mediated by Selective Rho-dependent Termination J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-24 Mercedes A.H. Warren Norris, Dylan M. Plaskon, Rita Tamayo
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Serotonin transporter-dependent histone serotonylation in placenta contributes to the neurodevelopmental transcriptome J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-23 Jennifer C Chan, Natalia Alenina, Ashley M Cunningham, Aarthi Ramakrishnan, Li Shen, Michael Bader, Ian Maze
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KMT2 family of H3K4 methyltransferases: enzymatic activity-dependent and -independent functions J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-22 Hieu T. Van, Guojia Xie, Peng Dong, Zhe Liu, Kai Ge
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Discovery of a trefoil knot in the RydC RNA: Challenging previous notions of RNA topology J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-23 Wanda Niemyska, Sunandan Mukherjee, Bartosz A. Gren, Szymon Niewieczerzal, Janusz M. Bujnicki, Joanna I. Sulkowska
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Interference Requirements of Type III CRISPR-Cas Systems from Thermus thermophilus J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-23 Karyna Karneyeva, Matvey Kolesnik, Alexei Livenskyi, Viktor Zgoda, Vasiliy Zubarev, Anna Trofimova, Daria Artamonova, Yaroslav Ispolatov, Konstantin Severinov
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Rapid optogenetic clustering in the cytoplasm with BcLOVclust J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-20 Zikang Huang, William Benman, Liang Dong, Lukasz J. Bugaj
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Crucial residue for tuning thermal relaxation kinetics in the biliverdin-binding cyanobacteriochrome photoreceptor revealed by site-saturation mutagenesis J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-19 Takahisa Suzuki, Masataka Yoshimura, Munehito Arai, Rei Narikawa
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Vibrational study of the inward proton pump Xenorhodopsin NsXeR: switch order determines vectoriality J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-18 Marvin Asido, Chokri Boumrifak, Juliane Weissbecker, Ernst Bamberg, Josef Wachtveitl
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A Practical Site-specific Method for the Detection of Bulky DNA Damages J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-20 Hiba Hassanain, Dana Tseitline, Tamar Hacohen, Adi Yifrach, Ayala Kirshenbaum, Bar Lavi, Avital Parnas, Sheera Adar
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Mechanisms of Allosteric Inhibition of Insulin-Regulated Aminopeptidase J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-18 Anastasia Mpakali, Ioanna Barla, Liying Lu, Karthik M. Ramesh, Nikolaos Thomaidis, Lawrence J. Stern, Petros Giastas, Efstratios Stratikos
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Human In vitro Modeling Identifies Adjuvant Combinations that Unlock Antigen Cross-presentation and Promote T-helper 1 Development in Newborns, Adults and Elders J. Mol. Biol. (IF 5.6) Pub Date : 2024-01-17 Sanya Thomas, Jensen Pak, Simon Doss-Gollin, Kevin Ryff, Elisabeth Beijnen, Gabriel K. Pedersen, Dennis Christensen, Ofer Levy, Simon D. van Haren