-
Optimal 3D angular sampling with applications to cryo-EM problems J. Struct. Biol. (IF 3.0) Pub Date : 2024-03-14 Valeriy Titarenko, Alan M. Roseman
[Display omitted]
-
Tooth acellular extrinsic fibre cementum incremental lines in humans are formed by parallel branched Sharpey’s fibres and not by its mineral phase J. Struct. Biol. (IF 3.0) Pub Date : 2024-03-11 Lourdes R. Couoh, Lauro Bucio, José Luis Ruvalcaba, Britta Manoel, Tengteng Tang, Aurélien Gourrier, Kathryn Grandfield
[Display omitted]
-
Effects of Xylanase A double mutation on substrate specificity and structural dynamics J. Struct. Biol. (IF 3.0) Pub Date : 2024-03-02 Meagan E. MacDonald, Nicholas G.M. Wells, Bakar A. Hassan, Joshua A. Dudley, Kylie J. Walters, Dmitry M. Korzhnev, James M. Aramini, Colin A. Smith
[Display omitted]
-
Deep generative priors for biomolecular 3D heterogeneous reconstruction from cryo-EM projections J. Struct. Biol. (IF 3.0) Pub Date : 2024-03-02 Bin Shi, Kevin Zhang, David J. Fleet, Robert A. McLeod, R.J. Dwayne Miller, Jane Y. Howe
[Display omitted]
-
Magnesium-containing calcite synthesis by tropomyosin determined from sea urchin spines J. Struct. Biol. (IF 3.0) Pub Date : 2024-03-01 Yugo Kato, Woosuk Ha, Zehua Zheng, Lumi Negishi, Jun Kawano, Yoshihisa Kurita, Hitoshi Kurumizaka, Michio Suzuki
[Display omitted]
-
Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-29 Da Xu, Nozomi Ando
[Display omitted]
-
Comprehensive structural overview of the C-terminal ligand-binding domains of the TetR family regulators J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-22 Jakub Filipek, Katarzyna Chalaskiewicz, Aleksandra Kosmider, Maciej Nielipinski, Agnieszka Michalak, Maria Bednarkiewicz, Mieszko Goslawski-Zeligowski, Filip Prucnal, Bartosz Sekula, Agnieszka J. Pietrzyk-Brzezinska
-
The structural biology of type III CRISPR-Cas systems J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-22 Xuzichao Li, Jie Han, Jie Yang, Heng Zhang
[Display omitted]
-
Obituary Luis Bachmann: An early pioneer of cryo-electron microscopy J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-20 Helmut Plattner, Wolfgang Baumeister
-
A strategic approach for efficient cryo-EM grid optimization using design of experiments J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-15 Rose Marie Haynes, Janette Myers, Claudia S. López, James Evans, Omar Davulcu, Craig Yoshioka
[Display omitted]
-
ColabSeg: An interactive tool for editing, processing, and visualizing membrane segmentations from cryo-ET data J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-15 Marc Siggel, Rasmus K. Jensen, Valentin J. Maurer, Julia Mahamid, Jan Kosinski
[Display omitted]
-
Control of crystal growth during coccolith formation by the coccolithophore Gephyrocapsa oceanica J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-11 Alexander Triccas, Fraser Laidlaw, Martin R. Singleton, Fabio Nudelman
[Display omitted]
-
Crystal structures of the fatty acid biosynthesis initiation enzymes in Bacillus subtilis J. Struct. Biol. (IF 3.0) Pub Date : 2024-02-03 Christopher D. Radka, Charles O. Rock
-
Characterization of a new extra-axonemal structure in the Giardia intestinalis flagella J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-26 Raphael Verdan, Beatriz Patricio, Gilberto Weismuller, Kildare Miranda, Wanderley de Souza, Marlene Benchimol, Ana Paula Gadelha
-
A strained N-capping motif in α-helices of βαβ-units J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-19 A, n, t, o, n, , M, ., , K, a, r, g, a, t, o, v
-
Focused ion beam-SEM 3D study of osteodentin in the teeth of the Atlantic wolfish Anarhichas lupus J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-13 Senthil Thangadurai, Marta Majkut, Joshua Milgram, Paul Zaslansky, Ron Shahar, Emeline Raguin
-
Solid-state NMR MAS CryoProbe enables structural studies of human blood protein vitronectin bound to hydroxyapatite J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-05 T. Gopinath, Kyungsoo Shin, Ye Tian, Wonpil Im, Jochem Struppe, Barbara Perrone, Alia Hassan, Francesca M. Marassi
-
Structure of the prenyltransferase in bifunctional copalyl diphosphate synthase from Penicillium fellutanum reveals an open hexamer conformation J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-05 Matthew N. Gaynes, Trey A. Ronnebaum, Kollin Schultz, Jacque L. Faylo, Ronen Marmorstein, David W. Christianson
-
Accurate, automatic determination of astigmatism and phase with Ctfplotter in IMOD J. Struct. Biol. (IF 3.0) Pub Date : 2024-01-04 D, a, v, i, d, , N, ., , M, a, s, t, r, o, n, a, r, d, e
-
Cryo-forum: A framework for orientation recovery with uncertainty measure with the application in cryo-EM image analysis J. Struct. Biol. (IF 3.0) Pub Date : 2023-12-30 S, z, u, -, C, h, i, , C, h, u, n, g
-
DeepQs: Local quality assessment of cryo-EM density map by deep learning map-model fit score J. Struct. Biol. (IF 3.0) Pub Date : 2023-12-30 Ming-Feng Feng, Yu-Xuan Chen, Hong-Bin Shen
-
A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions J. Struct. Biol. (IF 3.0) Pub Date : 2023-12-14 F.P. de Isidro-Gómez, J.L. Vilas, P. Losana, J.M. Carazo, C.O.S. Sorzano
-
Computational structural biology: Evolution of the field J. Struct. Biol. (IF 3.0) Pub Date : 2023-12-12 Jodi A. Hadden-Perilla, Juan R. Perilla
Abstract not available
-
Exploring the folding landscape of leptin: Insights into threading pathways J. Struct. Biol. (IF 3.0) Pub Date : 2023-12-06 Fernando Bruno da Silva, Jennifer M. Simien, Rafael G. Viegas, Ellinor Haglund, Vitor Barbanti Pereira Leite
-
-
-
The 3D organization of the mineralized scales of the sturgeon has structures reminiscent of dentin and bone: A FIB-SEM study J. Struct. Biol. (IF 3.0) Pub Date : 2023-11-15 Joshua Milgram, Katya Rehav, Jamal Ibrahim, Ron Shahar, Stephen Weiner
-
MarkerDetector: A method for robust fiducial marker detection in electron micrographs using wavelet-based template J. Struct. Biol. (IF 3.0) Pub Date : 2023-11-14 Gaoxin Hou, Zhidong Yang, Dawei Zang, Jose-Jesus Fernández, Fa Zhang, Renmin Han
-
Classification of helical polymers with deep-learning language models J. Struct. Biol. (IF 3.0) Pub Date : 2023-11-07 Daoyi Li, Wen Jiang
-
From in-silico screening to in-vitro evaluation: Enhancing the detection of Microcystins with engineered PP1 mutant variants J. Struct. Biol. (IF 3.0) Pub Date : 2023-11-05 Ezequiel J. Alba-Posse, Carlos David Bruque, Yamila Gándola, Javier Gasulla, Alejandro D. Nadra
-
Predicting virus Fitness: Towards a structure-based computational model J. Struct. Biol. (IF 3.0) Pub Date : 2023-11-04 Shivani Thakur, Kasper Planeta Kepp, Rukmankesh Mehra
-
Super-resolution fluorescence imaging of cryosamples does not limit achievable resolution in cryoEM J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-31 Mart G.F. Last, Willem E.M. Noteborn, Lenard M. Voortman, Thomas H. Sharp
-
Biochemical, structural and dynamical characterizations of the lactate dehydrogenase from Selenomonas ruminantium provide information about an intermediate evolutionary step prior to complete allosteric regulation acquisition in the super family of lactate and malate dehydrogenases J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-24 Quentin Bertrand, Sandrine Coquille, Antonio Iorio, Fabio Sterpone, Dominique Madern
-
Crystal structures of Streptomyces tsukubaensis sigma factor SigG1 and anti-sigma RsfG J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-18 José P. Leite, Frederico Lourenço, Rute Oliveira, Sérgio F. Sousa, Marta V. Mendes, Luís Gales
-
Announcement: Journal of Structural Biology – Paper of the Year 2022 J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-11 Martin Pilhofer
Abstract not available
-
Morphological and genetic mechanisms underlying the plasticity of the coral Porites astreoides across depths in Bermuda J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-11 Federica Scucchia, Kevin Wong, Paul Zaslansky, Hollie M. Putnam, Gretchen Goodbody-Gringley, Tali Mass
-
Beyond the surface: Investigation of tumorsphere morphology using volume electron microscopy J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-05 Nickhil Jadav, Sailakshmi Velamoor, Daniel Huang, Léna Cassin, Niki Hazelton, Alice-Roza Eruera, Laura N. Burga, Mihnea Bostina
The advent of volume electron microscopy (vEM) has provided unprecedented insights into cellular and subcellular organization, revolutionizing our understanding of cancer biology. This study presents a previously unexplored comparative analysis of the ultrastructural disparities between cancer cells cultured as monolayers and tumorspheres. By integrating a robust workflow that incorporates high-pressure
-
Sulisobenzone is a potent inhibitor of the global transcription factor Cra J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-05 Neetu Neetu, Jai Krishna Mahto, Monica Sharma, Madhusudhanarao Katiki, Preeti Dhaka, Partha Roy, Shailly Tomar, Anoop Narayan, Dinesh Yernool, Pravindra Kumar
Transcription is carried out by the RNA polymerase and is regulated through a series of interactions with transcription factors. Catabolite activator repressor (Cra), a LacI family transcription factor regulates the virulence gene expression in Enterohaemorrhagic Escherichia coli (EHEC) and thus is a promising drug target for the discovery of antivirulence molecules. Here, we report the crystal structure
-
Daisy: An integrated repeat protein curation service J. Struct. Biol. (IF 3.0) Pub Date : 2023-10-03 Manuel Bezerra-Brandao, Ronaldo Romario Tunque Cahui, Layla Hirsh
-
Journal of Structural Biology – Paper of the Year 2022 J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-26 Xinzheng Zhang
Abstract not available
-
Contribution of a surface salt bridge to the protein stability of deep-sea Shewanella benthica cytochrome c' J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-25 Sotaro Fujii, Riku Sakaguchi, Hiroya Oki, Kazuki Kawahara, Tadayasu Ohkubo, So Fujiyoshi, Yoshihiro Sambongi
-
Local defocus estimation in single particle analysis in cryo-electron microscopy J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-25 E. Fernandez-Gimenez, J.M. Carazo, C.O.S. Sorzano
-
Insight into structural biophysics from solution X-ray scattering J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-22 Uri Raviv, Roi Asor, Asaf Shemesh, Avi Ginsburg, Tal Ben-Nun, Yaelle Schilt, Yehonatan Levartovsky, Israel Ringel
The current challenges of structural biophysics include determining the structure of large self-assembled complexes, resolving the structure of ensembles of complex structures and their mass fraction, and unraveling the dynamic pathways and mechanisms leading to the formation of complex structures from their subunits. Modern synchrotron solution X-ray scattering data enable simultaneous high-spatial
-
Domain crossover in the reductase subunit of NADPH-dependent assimilatory sulfite reductase J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-12 Nidhi Walia, Daniel T. Murray, Yashika Garg, Huan He, Kevin L. Weiss, Gergely Nagy, M. Elizabeth Stroupe
-
A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-11 E. Fernández-Giménez, M.M. Martínez, R. Marabini, D. Strelak, R. Sánchez-García, J.M. Carazo, C.O.S. Sorzano
-
Selective labeling of phosphatidylserine for cryo-TEM by a two-step immunogold method J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-09 Na'ama Koifman, Maayan Nir-Shapira, Yeshayahu Talmon
-
Focused classifications and refinements in high-resolution single particle cryo-EM analysis J. Struct. Biol. (IF 3.0) Pub Date : 2023-09-01 Charles Barchet, Léo Fréchin, Samuel Holvec, Isabelle Hazemann, Ottilie von Loeffelholz, Bruno P. Klaholz
-
A STRP-ed definition of Structured Tandem Repeats in Proteins J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-29 Alexander Miguel Monzon, Paula Nazarena Arrías, Arne Elofsson, Pablo Mier, Miguel A. Andrade-Navarro, Martina Bevilacqua, Damiano Clementel, Alex Bateman, Layla Hirsh, Maria Silvina Fornasari, Gustavo Parisi, Damiano Piovesan, Andrey V. Kajava, Silvio C.E. Tosatto
-
Structure and heterogeneity of a highly cargo-loaded encapsulin shell J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-30 Seokmu Kwon, Michael P. Andreas, Tobias W. Giessen
-
Lipid composition modulates interactions of p7 viroporin during membrane insertion J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-15 Oluwatoyin Campbell, Viviana Monje-Galvan
-
Unusual structural and functional features of TpLRR/BspA-like LRR proteins J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-09 Abraham Takkouche, Xinru Qiu, Mayya Sedova, Lukasz Jaroszewski, Adam Godzik
-
Why does the first protein repeat often become the only one? J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-09 Simona Manasra, Andrey V. Kajava
-
Engineering of brick and staple components for ordered assembly of synthetic repeat proteins J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-09 Jessalyn Miller, Agathe Urvoas, Benoit Gigant, Malika Ouldali, Ana Arteni, Agnes Mesneau, Marie Valerio-Lepiniec, Franck Artzner, Erik Dujardin, Philippe Minard
-
Deep Learning-based structure modelling illuminates structure and function in uncharted regions of β-solenoid fold space J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-06 Shahram Mesdaghi, Rebecca M. Price, Jillian Madine, Daniel J. Rigden
-
Structure determination and analysis of titin A-band fibronectin type III domains provides insights for disease-linked variants and protein oligomerisation J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-05 Martin Rees, Roksana Nikoopour, Alexander Alexandrovich, Mark Pfuhl, Luis R. Lopes, Mohammed M. Akhtar, Petros Syrris, Perry Elliott, Gerry Carr-White, Mathias Gautel
-
Structure and dynamics of the mitochondrial DNA-compaction factor Abf2 from S. cerevisiae J. Struct. Biol. (IF 3.0) Pub Date : 2023-08-03 Jens Lidman, Ylber Sallova, Irena Matečko-Burmann, Björn M. Burmann
-
New protein families with hendecad coiled coils in the proteome of life J. Struct. Biol. (IF 3.0) Pub Date : 2023-07-29 Mikel Martinez-Goikoetxea, Andrei N. Lupas
-
Binding of human Cdc123 to eIF2γ J. Struct. Biol. (IF 3.0) Pub Date : 2023-07-27 Cristina Cardenal Peralta, Paul Vandroux, Lea Neumann-Arnold, Michel Panvert, Jérôme Fagart, Wolfgang Seufert, Yves Mechulam, Emmanuelle Schmitt
-
NMR structure verifies the eponymous zinc finger domain of transcription factor ZNF750 J. Struct. Biol. (IF 3.0) Pub Date : 2023-07-23 Antonio J. Rua, Richard D. Whitehead III, Andrei T. Alexandrescu
-
Identification of structural determinants of nicotinamide phosphoribosyl transferase (NAMPT) activity and substrate selectivity J. Struct. Biol. (IF 3.0) Pub Date : 2023-07-24 Dorothée Houry, Arne Raasakka, Eugenio Ferrario, Marc Niere, Ersilia Bifulco, Petri Kursula, Mathias Ziegler