Wound healing is characterized by the re-epitheliation of a tissue through the activation of contractile forces concentrated mainly at the wound edge. While the formation of an actin purse string has been identified as one of the main mechanisms, far less is known about the effects of the viscoelastic properties of the surrounding cells, and the different contribution of the junctional and cytoplasmic

Fibre topography of the extracellular matrix governs local mechanical properties and cellular behaviour including migration and gene expression. While quantifying properties of the fibrous network provides valuable data that could be used across a breadth of biomedical disciplines, most available techniques are limited to two dimensions and, therefore, do not fully capture the architecture of three-dimensional

A novel method to locate the centre of keratoconus (KC) and the transition zone between the pathological area and the rest of the corneal tissue is proposed in this study. A spherical coordinate system was used to generate a spherical height map measured relative to the centre of the optimal sphere fit, and normal to the surface. The cone centre was defined as the point with the maximum height. Second

We introduce a novel methodology for predicting the time evolution of the number of individuals in a given country reported to be infected with SARS-CoV-2. This methodology, which is based on the synergy of explicit mathematical formulae and deep learning networks, yields algorithms whose input is only the existing data in the given country of the accumulative number of individuals who are reported

Many larger and more complex viruses deviate from the capsid layouts predicted in the seminal Caspar–Klug theory of icosahedral viruses. Instead of being built from one type of capsid protein (CP), they code for multiple distinct structural proteins that either break the local symmetry of the CP building blocks (capsomers) in specific positions or exhibit auxiliary proteins that stabilize the capsid

A mathematical model is developed to describe the dynamics of the spread of a waterborne disease among communities located along a flowing waterway. The model is formulated as a system of reaction–diffusion–advection partial differential equations in this spatial setting. The compartments of the model consist of susceptible, infected, and recovered individuals in the communities along the waterway

An approach to implementing variational Bayesian inference in biological systems is considered, under which the thermodynamic free energy of a system directly encodes its variational free energy. In the case of the brain, this assumption places constraints on the neuronal encoding of generative and recognition densities, in particular requiring a stochastic population code. The resulting relationship

Current research on systems and synthetic biology relies heavily on mathematical models of the systems under study. The usefulness of such models depends on the quantity and quality of biological data, and on the availability of appropriate modelling formalisms that can gather and accommodate such data so that they can be exploited properly. Given our incomplete knowledge of biological systems and

Circulating tumour cells (CTCs) have recently been identified as valuable biomarkers for diagnostic and prognostic evaluations, as well for monitoring therapeutic responses to treatments. CTCs are rare cells which may be present as one CTC surrounded by approximately 1 million white blood cells and 1 billion red blood cells per millilitre of peripheral blood. Despite the various challenges in CTC detection

Natural markers (δ13C and δ18O stable isotopes) in the cuttlebones of the European common cuttlefish (Sepia officinalis) were determined for individuals collected across a substantial portion of their range in the Northeast Atlantic Ocean (NEAO) and Mediterranean Sea. Cuttlebone δ13C and δ18O were quantified for core and edge material to characterize geochemical signatures associated with early (juvenile)

Taphonomists have long struggled with identifying carnivore agency in bone accumulation and modification. Now that several taphonomic techniques allow identifying carnivore modification of bones, a next step involves determining carnivore type. This is of utmost importance to determine which carnivores were preying on and competing with hominins and what types of interaction existed among them during

The flexibility of biological propulsors such as wings and fins is believed to contribute to the higher performance of flying and swimming animals compared with their engineered peers. Flexibility seems to follow a universal design rule that induces bending patterns at about one-third from the distal tip of the propulsor’s span. However, the aerodynamic mechanisms that shaped this convergent design

This paper introduces a linear operator for the purposes of quantifying the spectral properties of transport within resistive trees, such as airflow in lung airway networks. The operator, which we call the Maury matrix, acts only on the terminal nodes of the tree and is equivalent to the adjacency matrix of a complete graph summarizing the relationships between all pairs of terminal nodes. We show

The evolution of multidrug antibiotic resistance in commensal bacteria is an important public health concern. Commensal bacteria such as Escherichia coli, Streptococcus pneumoniae or Staphylococcus aureus, are also opportunistic pathogens causing a large fraction of the community-acquired and hospital-acquired bacterial infections. Multidrug resistance (MDR) makes these infections harder to treat with

We provide a theoretical analysis of some autocatalytic reaction networks exhibiting the phenomenon of discreteness-induced transitions. The family of networks that we address includes the celebrated Togashi and Kaneko model. We prove positive recurrence, finiteness of all moments and geometric ergodicity of the models in the family. For some parameter values, we find the analytic expression for the

The formation of multiple beads along an injured axon will lead to blockage of axonal transport and eventually neuron death, and this has been widely recognized as a hallmark of nervous system degeneration. Nevertheless, the underlying mechanisms remain poorly understood. Here, we report a combined experimental and theoretical study to reveal key factors governing axon beading. Specifically, by transecting

The inherent force–velocity trade-off of muscles and motors can be overcome by instead loading and releasing energy in springs to power extreme movements. A key component of this paradigm is the latch that mediates the release of spring energy to power the motion. Latches have traditionally been considered as switches; they maintain spring compression in one state and allow the spring to release energy

Dengue is hyper-endemic in Singapore and Malaysia, and daily movement rates between the two countries are consistently high, allowing inference on the role of local transmission and imported dengue cases. This paper describes a custom built sparse space–time autoregressive (SSTAR) model to infer and forecast contemporaneous and future dengue transmission patterns in Singapore and 16 administrative

Understanding the complex interactions of biochemical processes underlying human disease represents the holy grail of systems biology. When processes are modelled in ordinary differential equation (ODE) fashion, the most common tool for their analysis is linear stability analysis where the long-term behaviour of the model is determined by linearizing the system around its steady states. However, this

Stingless bees of the genus Tetragonula construct a brood comb with a spiral or a target pattern architecture in three dimensions. Crystals possess these same patterns on the molecular scale. Here, we show that the same excitable-medium dynamics governs both crystal nucleation and growth and comb construction in Tetragonula, so that a minimal coupled-map lattice model based on crystal growth explains

A novel coronavirus (SARS-CoV-2) emerged as a global threat in December 2019. As the epidemic progresses, disease modellers continue to focus on estimating the basic reproductive number R0—the average number of secondary cases caused by a primary case in an otherwise susceptible population. The modelling approaches and resulting estimates of R0 during the beginning of the outbreak vary widely, despite

We present a simple three-dimensional model to describe the autonomous expansion of a substrate whose growth is driven by the local mean curvature of its surface. The model aims to reproduce the nest construction process in arboreal Nasutitermes termites, whose cooperation may similarly be mediated by the shape of the structure they are walking on, for example focusing the building activity of termites

The recent availability of digital traces from information and communications technologies has facilitated the study of both individual- and population-level movement with unprecedented spatio-temporal resolution, enabling us to better understand a plethora of socio-economic processes such as urbanization, transportation, impact on the environment and epidemic spreading to name a few. Using empirical

Mutualistic networks, which describe the ecological interactions between multiple types of species such as plants and pollinators, play a paramount role in the generation of Earth’s biodiversity. The resilience of a mutualistic network denotes its ability to retain basic functionality when errors and failures threaten the persistence of the community. Under the disturbances of mass extinctions and

The progression of game theory from classical to evolutionary and spatial games provided a powerful means to study cooperation, and enabled a better understanding of general cooperation-promoting mechanisms. However, current standard models assume that at any given point players must choose either cooperation or defection, meaning that regardless of the spatial structure in which they exist, they cannot

Wheat is threatened by diseases such as leaf rust. One significant mechanism of disease spread is the liberation and dispersal of rust spores due to rainsplash. However, it is unclear to what extent the spore-laden splashed droplets can transmit the disease to neighbouring leaves. Here, we show that splashed droplets either bounce or stick, depending on the orientation of the leaf and whether the surface

The rigidity of the human foot is often described as a feature of our evolution for upright walking and is bolstered by a thick plantar aponeurosis that connects the heel to the toes. Previous descriptions of human foot function consider stretch of the plantar aponeurosis via toe extension (windlass mechanism) to stiffen the foot as it is levered against the ground for push-off during walking. In this

The exoskeleton of nearly all insects consists of a flexible core and a stiff shell. The transition between these two is often characterized by a gradual change in the stiffness. However, the functional significance of this stiffness gradient is unknown. Here by combining finite-element analysis and multi-objective optimization, we simulated the mechanical response of about 3000 unique gradients of

The Lyapunov exponent (LyE) is a trending measure for characterizing gait stability. Previous studies have shown that data length has an effect on the resultant LyE, but the origin of why it changes is unknown. This study investigates if data length affects the choice of time delay and embedding dimension when reconstructing the phase space, which is a requirement for calculating the LyE. The effect

Aligned cells provide direction-dependent mechanical properties that influence biological and mechanical function in native tissues. Alignment techniques such as casting and uniaxial stretching cannot fully replicate the complex fibre orientation of native tissue such as the heart. In this study, bioprinting is used to direct the orientation of cell alignment. A 0°–90° grid structure was printed to

Much remains unknown about how considerations such as stability and energy minimization shape the way humans walk. While active neuromotor control keeps humans upright, they also need to choose from multiple stepping regulation strategies to achieve one or more task goals, such as maintaining a desired speed or direction. Experiments on human treadmill walking motivate an important question: why do

The treatment of hydrocephalus often involves the placement of a shunt catheter into the cerebrospinal ventricular space, though such ventricular catheters often fail by tissue obstruction. While diverse cell types contribute to the obstruction, astrocytes are believed to contribute to late catheter failure that can occur months after shunt insertion. Using in vitro microfluidic cultures of astrocytes

Metazoans gather information from their environments and respond in predictable ways. These computational tasks are achieved with neural networks of varying complexity. Their performance must be reliable over an individual’s lifetime while dealing with the shorter lifespan of cells and connection failure—thus rendering ageing a relevant feature. How do computations degrade over an organism’s lifespan

Research into haptic perception typically concentrates on mechanoreceptors and their supporting neuronal processes. This focus risks ignoring crucial aspects of active perception. For instance, bodily movements influence the information available to mechanoreceptors, entailing that movement facilitates haptic perception. Effortful manual wielding of an object prompts feedback loops at multiple spatio-temporal

Some dialect words are shared among geographically distant groups of people without close interaction. Such a pattern may indicate the current or past presence of a cultural centre exerting a strong influence on peripheries. For example, concentric distributions of dialect variants in Japan may be explicable by repeated inventions of new variants at Kyoto, the ancient capital, with subsequent outward

Many models of gene expression do not explicitly incorporate a cell cycle description. Here, we derive a theory describing how messenger RNA (mRNA) fluctuations for constitutive and bursty gene expression are influenced by stochasticity in the duration of the cell cycle and the timing of DNA replication. Analytical expressions for the moments show that omitting cell cycle duration introduces an error

Antibiotic therapy has drastically reduced the mortality and sequelae of bacterial infections. From naturally occurring to chemically synthesized, different classes of antibiotics have been successfully used without detailed knowledge of how they affect bacterial dynamics in vivo. However, a proportion of patients receiving antimicrobial therapy develop recrudescent infections post-treatment. Relapsing

A key concern in public health is whether disparities exist between urban and rural areas. One dimension of potential variation is the transmission of infectious diseases. In addition to potential differences between urban and rural local dynamics, the question of whether urban and rural areas participate equally in national dynamics remains unanswered. Specifically, urban and rural areas may diverge

Pockets of susceptibility resulting from spatial or social heterogeneity in vaccine coverage can drive measles outbreaks, as cases imported into such pockets are likely to cause further transmission and lead to large transmission clusters. Characterizing the dynamics of transmission is essential for identifying which individuals and regions might be most at risk. As data from detailed contact-tracing

Haematophagous ectoparasites must ensure a reliable hold to their host during blood meals and, therefore, have evolved a broad spectrum of versatile and effective attachment mechanisms. The Mediterranean medicinal leech (Hirudo verbana), for example, uses suction on both smooth and textured air-tight substrates. However, preliminary studies showed that H. verbana is also capable of attaching itself

Foraging bumblebees are electrically charged. Charge accumulation has been proposed to enable their ability to detect and react to electrical cues. One mechanism suggested for bumblebee electro-sensing is the interaction between external electric fields and electric charges accumulating on fine hairs on the cuticular body. Such hairs exhibit several functional adaptations, for example, thermal insulation

Massive foam formation in aquatic environments is a seasonal event that has a significant impact on the stability of marine ecosystems. Liquid foams are known to filter passive solid particles, with large particles remaining trapped by confinement in the network of liquid channels and small particles being freely advected by the gravity-driven flow. By contrast, the potential role of a similar retention

Some species have a longer lifespan than others, but usually lifespan is correlated with typical body weight. Here, we study the lifetime evolution of the metabolic behaviour of Nothobranchius furzeri, a killifish with an extremely short lifespan with respect to other fishes, even when taking into account rescaling by body weight. Comparison of the gene expression patterns of N. furzeri with those