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Metagenomic strategies identify diverse integron-integrase and antibiotic resistance genes in the Antarctic environment Microbiologyopen (IF 3.139) Pub Date : 2021-09-12 Verónica Antelo, Matías Giménez, Gastón Azziz, Patricia Valdespino-Castillo, Luisa I. Falcón, Lucas A. M. Ruberto, Walter P. Mac Cormack, Didier Mazel, Silvia Batista
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Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor Microbiologyopen (IF 3.139) Pub Date : 2021-08-28 Takashi Okubo, Hideto Takami
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Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance Microbiologyopen (IF 3.139) Pub Date : 2021-08-24 Maria Papadatou, Samuel C. Robson, Sergey Dobretsov, Joy E. M. Watts, Jennifer Longyear, Maria Salta
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Efficiency of the synthetic self-splicing RiboJ ribozyme is robust to cis- and trans-changes in genetic background Microbiologyopen (IF 3.139) Pub Date : 2021-08-24 Markéta Vlková, Bhargava Reddy Morampalli, Olin K. Silander
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Non-ribosomal insights from the ribosomal P2 protein in Plasmodium falciparum-infected erythrocytes Microbiologyopen (IF 3.139) Pub Date : 2021-08-22 Sudipta Das, Bhaskar Roy, Saswata Chakrabarty
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Nitrite as a causal factor for nitrate-dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains Microbiologyopen (IF 3.139) Pub Date : 2021-08-16 Takao Iino, Nobuaki Shono, Kimio Ito, Ryuhei Nakamura, Kazuo Sueoka, Shigeaki Harayama, Moriya Ohkuma
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Analysis of N-glycosylation in fungal l-amino acid oxidases expressed in the methylotrophic yeast Pichia pastoris Microbiologyopen (IF 3.139) Pub Date : 2021-08-15 Marc Christian Heß, Marvin Grollius, Valentin Duhay, Simon Koopmeiners, Svenja Bloess, Gabriele Fischer von Mollard
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Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds Microbiologyopen (IF 3.139) Pub Date : 2021-08-15 Aoi Ishida, Toshiki Furuya
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Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake Microbiologyopen (IF 3.139) Pub Date : 2021-08-03 Kaleigh R. Block, Joy M. O'Brien, William J. Edwards, Cassandra L. Marnocha
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Patterns of protist distribution and diversification in alpine lakes across Europe Microbiologyopen (IF 3.139) Pub Date : 2021-07-26 Janina C. Vogt, Jana L. Olefeld, Christina Bock, Jens Boenigk, Dirk C. Albach
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Schiff bases of sulphonamides as a new class of antifungal agent against multidrug-resistant Candida auris Microbiologyopen (IF 3.139) Pub Date : 2021-07-23 Asad Hamad, Yiyuan Chen, Mohsin A. Khan, Shirin Jamshidi, Naima Saeed, Melanie Clifford, Charlotte Hind, J. Mark Sutton, Khondaker Miraz Rahman
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Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii) Microbiologyopen (IF 3.139) Pub Date : 2021-07-23 Constanza Toro-Valdivieso, Frederick Toro, Samuel Stubbs, Eduardo Castro-Nallar, Barbara Blacklaws
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Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes Microbiologyopen (IF 3.139) Pub Date : 2021-07-23 Sara Fareed Mohamed Wahdan, Benjawan Tanunchai, Yu-Ting Wu, Chakriya Sansupa, Martin Schädler, Turki M. Dawoud, François Buscot, Witoon Purahong
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Measuring the absolute abundance of the microbiome by adding yeast containing 16S rRNA gene from a hyperthermophile Microbiologyopen (IF 3.139) Pub Date : 2021-07-23 Ju Yeong Kim, Myung-hee Yi, Myungjun Kim, Seogwon Lee, Hye Su Moon, Dongeun Yong, Tai-Soon Yong
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Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf-5 Microbiologyopen (IF 3.139) Pub Date : 2021-07-19 Boyd A. McKew, Richard Johnson, Lindsay Clothier, Karl Skeels, Matthew S. Ross, Metodi Metodiev, Max Frenzel, Lisa M. Gieg, Jonathan W. Martin, Michael A. Hough, Corinne Whitby
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Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution-derived hydrogen Microbiologyopen (IF 3.139) Pub Date : 2021-07-19 Mario Toubes-Rodrigo, Sanja Potgieter-Vermaak, Robin Sen, Edda S. Oddsdóttir, David Elliott, Simon Cook
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The bacterial and fungal community composition in time and space in the nest mounds of the ant Formica exsecta (Hymenoptera: Formicidae) Microbiologyopen (IF 3.139) Pub Date : 2021-07-19 Stafva Lindström, Sari Timonen, Liselotte Sundström
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The c-di-AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis Microbiologyopen (IF 3.139) Pub Date : 2021-07-19 Gro Herredsvela Rørvik, Ali-Oddin Naemi, Per Kristian Thorén Edvardsen, Roger Simm
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Deletion of Rap-Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization Microbiologyopen (IF 3.139) Pub Date : 2021-06-27 Mathilde Nordgaard, Rasmus Møller Rosenbek Mortensen, Nikolaj Kaae Kirk, Ramses Gallegos-Monterrosa, Ákos T. Kovács
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Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources Microbiologyopen (IF 3.139) Pub Date : 2021-06-27 Fang Huang, Roya R. R. Sardari, Andrius Jasilionis, Olof Böök, Rickard Öste, Ana Rascón, Lovisa Heyman-Lindén, Olle Holst, Eva Nordberg Karlsson
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Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli Microbiologyopen (IF 3.139) Pub Date : 2021-06-28 Seiga Tachibana, Tai-Ying Chiou, Masaaki Konishi
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Niche partitioning of bacterial communities along the stratified water column in the Black Sea Microbiologyopen (IF 3.139) Pub Date : 2021-06-21 Mariia Pavlovska, Ievgeniia Prekrasna, Evgen Dykyi, Andrii Zotov, Artem Dzhulai, Alina Frolova, Jaroslav Slobodnik, Elena Stoica
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Optimized bacterial DNA isolation method for microbiome analysis of human tissues Microbiologyopen (IF 3.139) Pub Date : 2021-06-16 Carlijn E. Bruggeling, Daniel R. Garza, Soumia Achouiti, Wouter Mes, Bas E. Dutilh, Annemarie Boleij
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Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis Microbiologyopen (IF 3.139) Pub Date : 2021-06-16 Pavel Drevinek, Jakub Hurych, Milena Antuskova, Jan Tkadlec, Jan Berousek, Zuzana Prikrylova, Jiri Bures, Jaromir Vajter, Martin Soucek, Jan Masopust, Vendula Martinkova, Jaroslava Adamkova, Veronika Hysperska, Eliska Bebrova
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Assessing a transmission network of Mycobacterium tuberculosis in an African city using single nucleotide polymorphism threshold analysis Microbiologyopen (IF 3.139) Pub Date : 2021-06-16 Edriss Yassine, Ronald Galiwango, Willy Ssengooba, Fred Ashaba, Moses L. Joloba, Sarah Zalwango, Christopher C. Whalen, Frederick Quinn
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Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora Microbiologyopen (IF 3.139) Pub Date : 2021-06-07 Fadi Dagher, Arvin Nickzad, Jie Zheng, Maria Hoffmann, Eric Déziel
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Primary antibiotic resistance of Helicobacter pylori isolates is twofold more frequent in HIV-positive than HIV-negative individuals: A descriptive observational study Microbiologyopen (IF 3.139) Pub Date : 2021-05-31 Marcel Nkuize, Jean Vanderpas, Michel Buset, Maria Gomez-Galdon, Marc Delforge, Véronique Yvette Miendje-Deyi, Vinciane Muls, Stéphane De Wit
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Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses Microbiologyopen (IF 3.139) Pub Date : 2021-05-24 Dandan Tian, Xiupeng Song, Chaosheng Li, Wei Zhou, Liuyan Qin, Liping Wei, Wei Di, Sumei Huang, Baoshen Li, Quyan Huang, Shengfeng Long, Zhangfei He, Shaolong Wei
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Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii Microbiologyopen (IF 3.139) Pub Date : 2021-05-25 Jiao Liu, Yongfei Liu, Jie Wu, Huan Fang, Zhaoxia Jin, Dawei Zhang
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Environmental hotspots for antibiotic resistance genes Microbiologyopen (IF 3.139) Pub Date : 2021-05-15 Shalini Kunhikannan, Colleen J. Thomas, Ashley E. Franks, Sumana Mahadevaiah, Sumana Kumar, Steve Petrovski
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The effect of calcium palmitate on bacteria associated with infant gut microbiota Microbiologyopen (IF 3.139) Pub Date : 2021-05-15 Lu Wang, Gabriela Bravo‐Ruiseco, Randolph Happe, Tao He, Jan Maarten van Dijl, Hermie J. M. Harmsen
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Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach Microbiologyopen (IF 3.139) Pub Date : 2021-05-15 Marcel Suleiman, Yves Choffat, Uriah Daugaard, Owen L. Petchey
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Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota Microbiologyopen (IF 3.139) Pub Date : 2021-05-15 Madis Jaagura, Ene Viiard, Kätrin Karu‐Lavits, Kaarel Adamberg
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Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice Microbiologyopen (IF 3.139) Pub Date : 2021-05-15 Li He, Yan‐Xia Zhou, Yuqing Zhang, Bo Hang, Hang Chang, Suzaynn F. Schick, Susan E. Celniker, Yankai Xia, Antoine M. Snijders, Jian‐Hua Mao
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Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples Microbiologyopen (IF 3.139) Pub Date : 2021-05-09 Cristianne Sousa Bezerra, Moyra Machado Portilho, Cristiane Cunha Frota, Lívia Melo Villar
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Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples Microbiologyopen (IF 3.139) Pub Date : 2021-05-07 Silvia Tenorio‐Salgado, Hugo G. Castelán‐Sánchez, Sonia Dávila‐Ramos, Alejandro Huerta‐Saquero, Sergio Rodríguez‐Morales, Enrique Merino‐Pérez, Luis Fernando Roa de la Fuente, Sara E. Solis‐Pereira, Ernesto Pérez‐Rueda, Gabriel Lizama‐Uc
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Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism Microbiologyopen (IF 3.139) Pub Date : 2021-05-07 Jiashen Tian, Jing Du, Shengjiu Zhang, Yanqiu Li, Xianggang Gao, Jiabo Han, Zhichuang Lu
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The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Marjolein J. G. Hooykaas, Paul J. J. Hooykaas
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Magnesium depletion extends fission yeast lifespan via general amino acid control activation Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Hokuto Ohtsuka, Mikuto Kobayashi, Takafumi Shimasaki, Teppei Sato, Genki Akanuma, Yasuyuki Kitaura, Yoko Otsubo, Akira Yamashita, Hirofumi Aiba
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Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Haiyang Wang, Chongxing Zhang, Peng Cheng, Yang Wang, Hongmei Liu, Haifang Wang, Huaiwei Wang, Maoqing Gong
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Staphylococcus aureus ST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Dafne Bongiorno, Nicolò Musso, Giuseppe Caruso, Lorenzo Mattia Lazzaro, Filippo Caraci, Stefania Stefani, Floriana Campanile
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Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Elina Apine, Praveen Rai, Madhu K. Mani, Vikram Subramanian, Indrani Karunasagar, Anna Godhe, Lucy M. Turner
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Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Brenda Maldonado‐Arriaga, Sergio Sandoval‐Jiménez, Juan Rodríguez‐Silverio, Sofía Lizeth Alcaráz‐Estrada, Tomás Cortés‐Espinosa, Rebeca Pérez‐Cabeza de Vaca, Cuauhtémoc Licona‐Cassani, July Stephany Gámez‐Valdez, Jonathan Shaw, Paul Mondragón‐Terán, Cecilia Hernández‐Cortez, Juan Antonio Suárez‐Cuenca, Graciela Castro‐Escarpulli
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Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Irina Lascu, Ioana Mereuță, Iulia Chiciudean, Hilde Hansen, Sorin Marius Avramescu, Ana‐Maria Tănase, Ileana Stoica
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Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Reagan Badger, Ken Aho, Kinta Serve
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Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging Microbiologyopen (IF 3.139) Pub Date : 2021-05-01 Xunmin Tan, Tingjia Chai, Jiajia Duan, Jing Wu, Hanping Zhang, Yifan Li, Yu Huang, Xi Hu, Peng Zheng, Jinlin Song, Ping Ji, Xin Jin, Hongmei Zhang, Peng Xie
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Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens Microbiologyopen (IF 3.139) Pub Date : 2021-04-09 Marina Scillato, Ambra Spitale, Gino Mongelli, Grete Francesca Privitera, Katia Mangano, Antonio Cianci, Stefania Stefani, Maria Santagati
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Inhibition of microbial production of the malodorous substance isovaleric acid by 4,4ʹ dichloro 2‐hydroxydiphenyl ether (DCPP) Microbiologyopen (IF 3.139) Pub Date : 2021-04-09 Sonja Mayer, Menno Hazenkamp, Martin Kluttig, Dietmar Ochs
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A study of innate immune kinetics reveals a role for a chloride transporter in a virulent Francisella tularensis type B strain Microbiologyopen (IF 3.139) Pub Date : 2021-03-24 Lisa M. Matz, Joseph F. Petrosino
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Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation Microbiologyopen (IF 3.139) Pub Date : 2021-03-24 Fang Liu, Zhiyong Wu, Xiaoping Zhang, Gaolei Xi, Zhe Zhao, Miao Lai, Mingqin Zhao
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Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance Microbiologyopen (IF 3.139) Pub Date : 2021-02-28 Joseph S. Palmer, Linda A. Lawton, Rocky Kindt, Christine Edwards
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Characterization of the microbiota and chemical properties of pork loins during dry aging Microbiologyopen (IF 3.139) Pub Date : 2021-01-07 Akihito Endo, Ryosuke Koizumi, Yozo Nakazawa, Yuh Shiwa, Shintaro Maeno, Yoshihiko Kido, Tomohiro Irisawa, Yoshiki Muramatsu, Kotaro Tada, Masao Yamazaki, Takao Myoda
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Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments Microbiologyopen (IF 3.139) Pub Date : 2021-02-27 Paula Dalcin Martins, Anniek de Jong, Wytze K. Lenstra, Niels A. G. M. van Helmond, Caroline P. Slomp, Mike S. M. Jetten, Cornelia U. Welte, Olivia Rasigraf
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Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides Microbiologyopen (IF 3.139) Pub Date : 2021-02-18 Luis Romero Soto, Habib Thabet, Reuben Maghembe, Denise Gameiro, Doan Van‐Thuoc, Tarek Dishisha, Rajni Hatti‐Kaul
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Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial Microbiologyopen (IF 3.139) Pub Date : 2021-02-17 Yao Chen, Hongxun Yuan, Hui Ye, Zongming Shi, Xin Deng, Xuezhi Zhang, Xikang Hou
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Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica Microbiologyopen (IF 3.139) Pub Date : 2020-12-29 Margarita Smirnova, Uladzislau Miamin, Achim Kohler, Leonid Valentovich, Artur Akhremchuk, Anastasiya Sidarenka, Andrey Dolgikh, Volha Shapaval
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Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine Microbiologyopen (IF 3.139) Pub Date : 2021-02-16 Simone Scherrer, Roger Stephan
A novel TaqMan 5‐plex real‐time PCR using a combination of locked nucleic acid‐modified (LNA)‐ and minor groove binding (MGB)‐conjugated DNA probes was developed for identification and differentiation between the four main pathogenic Brachyspira species in swine. B. hyodysenteriae, B. pilosicoli, and B. suanatina are identified using three hydrolysis probes targeting cpn60, while B. hampsonii is recognized
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Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates Microbiologyopen (IF 3.139) Pub Date : 2020-12-25 Márton Szoboszlay, Christoph C. Tebbe
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Identification of a conserved N‐terminal domain in the first module of ACV synthetases Microbiologyopen (IF 3.139) Pub Date : 2021-01-15 Riccardo Iacovelli, László Mózsik, Roel A.L. Bovenberg, Arnold J.M. Driessen
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Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock Microbiologyopen (IF 3.139) Pub Date : 2020-12-14 Petra Patakova, Jan Kolek, Katerina Jureckova, Barbora Branska, Karel Sedlar, Maryna Vasylkivska, Ivo Provaznik
更新日期：2021-09-13
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