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Micro-scale interactions between Arabidopsis root hairs and soil particles influence soil erosion Commun. Biol. Pub Date : 2020-04-03 Sarah De Baets; Thomas D. G. Denbigh; Kevin M. Smyth; Bethany M. Eldridge; Laura Weldon; Benjamin Higgins; Antoni Matyjaszkiewicz; Jeroen Meersmans; Emily R. Larson; Isaac V. Chenchiah; Tanniemola B. Liverpool; Timothy A. Quine; Claire S. Grierson
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Transmembrane protein rotaxanes reveal kinetic traps in the refolding of translocated substrates Commun. Biol. Pub Date : 2020-04-03 Jianfei Feng; Pablo Martin-Baniandres; Michael J. Booth; Gianluca Veggiani; Mark Howarth; Hagan Bayley; David Rodriguez-Larrea
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Anti-HIV agent azidothymidine decreases Tet(X)-mediated bacterial resistance to tigecycline in Escherichia coli Commun. Biol. Pub Date : 2020-04-03 Yuan Liu; Yuqian Jia; Kangni Yang; Ruichao Li; Xia Xiao; Zhiqiang Wang
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Molecular bases for HOIPINs-mediated inhibition of LUBAC and innate immune responses Commun. Biol. Pub Date : 2020-04-03 Daisuke Oikawa; Yusuke Sato; Fumiaki Ohtake; Keidai Komakura; Kazuki Hanada; Koji Sugawara; Seigo Terawaki; Yukari Mizukami; Hoang T. Phuong; Kiyosei Iio; Shingo Obika; Masaya Fukushi; Takashi Irie; Daisuke Tsuruta; Shinji Sakamoto; Keiji Tanaka; Yasushi Saeki; Shuya Fukai; Fuminori Tokunaga
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Free-energy landscapes of membrane co-translocational protein unfolding Commun. Biol. Pub Date : 2020-04-03 Christian Bech Rosen; Hagan Bayley; David Rodriguez-Larrea
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Miro2 tethers the ER to mitochondria to promote mitochondrial fusion in tobacco leaf epidermal cells Commun. Biol. Pub Date : 2020-04-03 Rhiannon R. White; Congping Lin; Ian Leaves; Inês G. Castro; Jeremy Metz; Benji C. Bateman; Stanley W. Botchway; Andrew D. Ward; Peter Ashwin; Imogen Sparkes
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Distinct sensorimotor feedback loops for dynamic and static control of primate precision grip Commun. Biol. Pub Date : 2020-04-02 Tomomichi Oya; Tomohiko Takei; Kazuhiko Seki
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Author Correction: Constitutive alterations in vesicular trafficking increase the sensitivity of cells from celiac disease patients to gliadin Commun. Biol. Pub Date : 2020-04-02 Giuliana Lania; Merlin Nanayakkara; Mariantonia Maglio; Renata Auricchio; Monia Porpora; Mariangela Conte; Maria Antonietta De Matteis; Riccardo Rizzo; Alberto Luini; Valentina Discepolo; Riccardo Troncone; Salvatore Auricchio; Maria Vittoria Barone
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Hydrostatic pressure promotes endothelial tube formation through aquaporin 1 and Ras-ERK signaling Commun. Biol. Pub Date : 2020-04-02 Daisuke Yoshino; Kenichi Funamoto; Kakeru Sato; Kenry; Masaaki Sato; Chwee Teck Lim
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DNA copy number motifs are strong and independent predictors of survival in breast cancer Commun. Biol. Pub Date : 2020-04-02 Arne V. Pladsen; Gro Nilsen; Oscar M. Rueda; Miriam R. Aure; Ørnulf Borgan; Knut Liestøl; Valeria Vitelli; Arnoldo Frigessi; Anita Langerød; Anthony Mathelier; Olav Engebråten; Vessela Kristensen; David C. Wedge; Peter Van Loo; Carlos Caldas; Anne-Lise Børresen-Dale; Hege G. Russnes; Ole Christian Lingjærde
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The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children Commun. Biol. Pub Date : 2020-04-02 Derick N. M. Osakunor; Patrick Munk; Takafira Mduluza; Thomas N. Petersen; Christian Brinch; Alasdair Ivens; Theresa Chimponda; Seth A. Amanfo; Janice Murray; Mark E. J. Woolhouse; Frank M. Aarestrup; Francisca Mutapi
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Deep microbial proliferation at the basalt interface in 33.5–104 million-year-old oceanic crust Commun. Biol. Pub Date : 2020-04-02 Yohey Suzuki; Seiya Yamashita; Mariko Kouduka; Yutaro Ao; Hiroki Mukai; Satoshi Mitsunobu; Hiroyuki Kagi; Steven D’Hondt; Fumio Inagaki; Yuki Morono; Tatsuhiko Hoshino; Naotaka Tomioka; Motoo Ito
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Pan-cancer molecular analysis of the RB tumor suppressor pathway Commun. Biol. Pub Date : 2020-04-02 Erik S. Knudsen; Ram Nambiar; Spencer R. Rosario; Dominic J. Smiraglia; David W. Goodrich; Agnieszka K. Witkiewicz
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Lifestyle mediates the role of nutrient-sensing pathways in cognitive aging: cellular and epidemiological evidence Commun. Biol. Pub Date : 2020-04-02 Chiara de Lucia; Tytus Murphy; Claire J. Steves; Richard J. B. Dobson; Petroula Proitsi; Sandrine Thuret
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Single-cell analysis of a mutant library generated using CRISPR-guided deaminase in human melanoma cells Commun. Biol. Pub Date : 2020-04-02 Soyeong Jun; Hyeonseob Lim; Honggu Chun; Ji Hyun Lee; Duhee Bang
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Maize GOLDEN2-LIKE genes enhance biomass and grain yields in rice by improving photosynthesis and reducing photoinhibition Commun. Biol. Pub Date : 2020-04-01 Xia Li; Peng Wang; Jing Li; Shaobo Wei; Yanyan Yan; Jun Yang; Ming Zhao; Jane A. Langdale; Wenbin Zhou
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Bilateral and unilateral odor processing and odor perception Commun. Biol. Pub Date : 2020-04-01 Tal Dalal; Nitin Gupta; Rafi Haddad
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Heterospecific eavesdropping on an anti-parasitic referential alarm call Commun. Biol. Pub Date : 2020-03-31 Shelby L. Lawson; Janice K. Enos; Niko C. Mendes; Sharon A. Gill; Mark E. Hauber
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Freezing and piercing of in vitro asymmetric plasma membrane by α-synuclein Commun. Biol. Pub Date : 2020-03-31 Paul Heo; Frederic Pincet
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Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes Commun. Biol. Pub Date : 2020-03-27 Aminah Tasnim Ali; Youssef Idaghdour; Alan Hodgkinson
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Function-based high-throughput screening for antibody antagonists and agonists against G protein-coupled receptors Commun. Biol. Pub Date : 2020-03-26 Huanhuan Ren; Jian Li; Ning Zhang; Liaoyuan A. Hu; Yingli Ma; Philip Tagari; Jianqing Xu; Mei-Yun Zhang
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Author Correction: Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank Commun. Biol. Pub Date : 2020-03-26 Weihua Meng; Mark J. Adams; Colin N. A. Palmer; Jingchunzi Shi; Adam Auton; Kathleen A. Ryan; Joanne M. Jordan; Braxton D. Mitchell; Rebecca D. Jackson; Michelle S. Yau; Andrew M. McIntosh; Blair H. Smith
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response Commun. Biol. Pub Date : 2020-03-26 Carina Steliana Carianopol; Aaron Lorheed Chan; Shaowei Dong; Nicholas J. Provart; Shelley Lumba; Sonia Gazzarrini
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Combined deletions of IHH and NHEJ1 cause chondrodystrophy and embryonic lethality in the Creeper chicken Commun. Biol. Pub Date : 2020-03-25 Keiji Kinoshita; Takayuki Suzuki; Manabu Koike; Chizuko Nishida; Aki Koike; Mitsuo Nunome; Takeo Uemura; Kenji Ichiyanagi; Yoichi Matsuda
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In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli Commun. Biol. Pub Date : 2020-03-25 Masaru Shimojo; Kazuaki Amikura; Keiko Masuda; Takashi Kanamori; Takuya Ueda; Yoshihiro Shimizu
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The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P 2 facilitating unconventional secretion of Fibroblast Growth Factor 2 Commun. Biol. Pub Date : 2020-03-25 Cyril Legrand; Roberto Saleppico; Jana Sticht; Fabio Lolicato; Hans-Michael Müller; Sabine Wegehingel; Eleni Dimou; Julia P. Steringer; Helge Ewers; Ilpo Vattulainen; Christian Freund; Walter Nickel
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Ultrafast in-gel detection by fluorescent super-chelator probes with HisQuick-PAGE Commun. Biol. Pub Date : 2020-03-20 Stefan Brüchert; Eike F. Joest; Karl Gatterdam; Robert Tampé
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Extended pharmacodynamic responses observed upon PROTAC-mediated degradation of RIPK2 Commun. Biol. Pub Date : 2020-03-20 Alina Mares; Afjal H. Miah; Ian E. D. Smith; Mark Rackham; Aditya R. Thawani; Jenni Cryan; Pamela A. Haile; Bartholomew J. Votta; Allison M. Beal; Carol Capriotti; Michael A. Reilly; Don T. Fisher; Nico Zinn; Marcus Bantscheff; Thomas T. MacDonald; Anna Vossenkamper; Phoebe Dace; Ian Churcher; Andrew B. Benowitz; Gillian Watt; Jane Denyer; Paul Scott-Stevens; John D. Harling
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Glutamatergic basolateral amygdala to anterior insular cortex circuitry maintains rewarding contextual memory Commun. Biol. Pub Date : 2020-03-20 Elvi Gil-Lievana; Israela Balderas; Perla Moreno-Castilla; Jorge Luis-Islas; Ross A. McDevitt; Fatuel Tecuapetla; Ranier Gutierrez; Antonello Bonci; Federico Bermúdez-Rattoni
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Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform Commun. Biol. Pub Date : 2020-03-20 Judit Szarvas; Johanne Ahrenfeldt; Jose Luis Bellod Cisneros; Martin Christen Frølund Thomsen; Frank M. Aarestrup; Ole Lund
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Why does the Aβ peptide of Alzheimer share structural similarity with antimicrobial peptides? Commun. Biol. Pub Date : 2020-03-19 Annalisa Pastore; Francesco Raimondi; Lawrence Rajendran; Piero Andrea Temussi
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Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error Commun. Biol. Pub Date : 2020-03-19 Qiao Fan; Alfred Pozarickij; Nicholas Y. Q. Tan; Xiaobo Guo; Virginie J. M. Verhoeven; Veronique Vitart; Jeremy A. Guggenheim; Masahiro Miyake; J. Willem L. Tideman; Anthony P. Khawaja; Liang Zhang; Stuart MacGregor; René Höhn; Peng Chen; Ginevra Biino; Juho Wedenoja; Seyed Ehsan Saffari; Milly S. Tedja; Jing Xie; Carla Lanca; Ya Xing Wang; Srujana Sahebjada; Johanna Mazur; Alireza Mirshahi; Nicholas
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A miRNA-based diagnostic model predicts resectable lung cancer in humans with high accuracy Commun. Biol. Pub Date : 2020-03-19 Keisuke Asakura; Tsukasa Kadota; Juntaro Matsuzaki; Yukihiro Yoshida; Yusuke Yamamoto; Kazuo Nakagawa; Satoko Takizawa; Yoshiaki Aoki; Eiji Nakamura; Junichiro Miura; Hiromi Sakamoto; Ken Kato; Shun-ichi Watanabe; Takahiro Ochiya
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Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice Commun. Biol. Pub Date : 2020-03-18 Philipp Wuggenig; Berna Kaya; Hassan Melhem; C. Korcan Ayata; Petr Hruz; A. Emre Sayan; Hideki Tsumura; Morihiro Ito; Julien Roux; Jan Hendrik Niess
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The COX-2/PGE 2 pathway suppresses apical elimination of RasV12-transformed cells from epithelia Commun. Biol. Pub Date : 2020-03-18 Nanami Sato; Yuta Yako; Takeshi Maruyama; Susumu Ishikawa; Keisuke Kuromiya; Suzumi M. Tokuoka; Yoshihiro Kita; Yasuyuki Fujita
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NORFA , long intergenic noncoding RNA, maintains sow fertility by inhibiting granulosa cell death Commun. Biol. Pub Date : 2020-03-18 Xing Du; Lu Liu; Qiqi Li; Lifan Zhang; Zengxiang Pan; Qifa Li
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Interaction of SHP-2 SH2 domains with PD-1 ITSM induces PD-1 dimerization and SHP-2 activation Commun. Biol. Pub Date : 2020-03-17 Nikolaos Patsoukis; Jonathan S. Duke-Cohan; Apoorvi Chaudhri; Halil-Ibrahim Aksoylar; Qi Wang; Asia Council; Anders Berg; Gordon J. Freeman; Vassiliki A. Boussiotis
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Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank Commun. Biol. Pub Date : 2020-03-17 Thorhildur Olafsdottir; Gudmar Thorleifsson; Patrick Sulem; Olafur A. Stefansson; Helga Medek; Karl Olafsson; Orri Ingthorsson; Valur Gudmundsson; Ingileif Jonsdottir; Gisli H. Halldorsson; Ragnar P. Kristjansson; Michael L. Frigge; Lilja Stefansdottir; Jon K. Sigurdsson; Asmundur Oddsson; Asgeir Sigurdsson; Hannes P. Eggertsson; Pall Melsted; Bjarni V. Halldorsson; Sigrun H. Lund; Unnur Styrkarsdottir;
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Transcriptome signature analysis repurposes trifluoperazine for the treatment of fragile X syndrome in mouse model Commun. Biol. Pub Date : 2020-03-16 Qi Ding; Ferzin Sethna; Xue-Ting Wu; Zhuang Miao; Ping Chen; Yueqi Zhang; Hua Xiao; Wei Feng; Yue Feng; Xuan Li; Hongbing Wang
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Upregulation of large myelin protein zero leads to Charcot–Marie–Tooth disease-like neuropathy in mice Commun. Biol. Pub Date : 2020-03-13 Yoshinori Otani; Nobuhiko Ohno; Jingjing Cui; Yoshihide Yamaguchi; Hiroko Baba
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A learning based framework for diverse biomolecule relationship prediction in molecular association network Commun. Biol. Pub Date : 2020-03-13 Zhen-Hao Guo; Zhu-Hong You; De-Shuang Huang; Hai-Cheng Yi; Zhan-Heng Chen; Yan-Bin Wang
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Podosome formation promotes plasma membrane invagination and integrin-β3 endocytosis on a viscous RGD-membrane Commun. Biol. Pub Date : 2020-03-13 Fakun Cao; Yuhuan Zhou; Xiaoting Liu; Cheng-han Yu
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Deep splicing plasticity of the human adenovirus type 5 transcriptome drives virus evolution Commun. Biol. Pub Date : 2020-03-13 I’ah Donovan-Banfield; Andrew S. Turnell; Julian A. Hiscox; Keith N. Leppard; David A. Matthews
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Engineering of an enhanced synthetic Notch receptor by reducing ligand-independent activation Commun. Biol. Pub Date : 2020-03-13 Zi-jie Yang; Zi-yan Yu; Yi-ming Cai; Rong-rong Du; Liang Cai
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Cholesteryl α-D-glucoside 6-acyltransferase enhances the adhesion of Helicobacter pylori to gastric epithelium Commun. Biol. Pub Date : 2020-03-13 Hau-Ming Jan; Yi-Chi Chen; Tsai-Chen Yang; Lih-Lih Ong; Chia-Chen Chang; Sasikala Muthusamy; Andualem Bahiru Abera; Ming-Shiang Wu; Jacquelyn Gervay-Hague; Kwok-Kong Tony Mong; Chun-Hung Lin
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Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring Commun. Biol. Pub Date : 2020-03-13 Junjun Li; Lu Zhang; Leqian Yu; Itsunari Minami; Shigeru Miyagawa; Marcel Hörning; Ji Dong; Jing Qiao; Xiang Qu; Ying Hua; Nanae Fujimoto; Yuji Shiba; Yang Zhao; Fuchou Tang; Yong Chen; Yoshiki Sawa; Chao Tang; Li Liu
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Increasing atmospheric CO 2 concentrations correlate with declining nutritional status of European forests Commun. Biol. Pub Date : 2020-03-13 Josep Penuelas; Marcos Fernández-Martínez; Helena Vallicrosa; Joan Maspons; Paolo Zuccarini; Jofre Carnicer; Tanja G. M. Sanders; Inken Krüger; Michael Obersteiner; Ivan A. Janssens; Philippe Ciais; Jordi Sardans
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Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells Commun. Biol. Pub Date : 2020-03-13 Jackson A. Hoffman; Brian N. Papas; Kevin W. Trotter; Trevor K. Archer
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Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells Commun. Biol. Pub Date : 2020-03-13 Harmonie Perdreau-Dahl; Cinzia Progida; Stefan J. Barfeld; Hanne Guldsten; Bernd Thiede; Magnus Arntzen; Oddmund Bakke; Ian G. Mills; Stefan Krauss; J. Preben Morth
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Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes Commun. Biol. Pub Date : 2020-03-13 Johannes Alneberg; Christin Bennke; Sara Beier; Carina Bunse; Christopher Quince; Karolina Ininbergs; Lasse Riemann; Martin Ekman; Klaus Jürgens; Matthias Labrenz; Jarone Pinhassi; Anders F. Andersson
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Nuclear myosin 1 activates p21 gene transcription in response to DNA damage through a chromatin-based mechanism Commun. Biol. Pub Date : 2020-03-11 Tomas Venit; Khairunnisa Semesta; Sannia Farrukh; Martin Endara-Coll; Robert Havalda; Pavel Hozak; Piergiorgio Percipalle
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Spatial and temporal tracking of cardiac exosomes in mouse using a nano-luciferase-CD63 fusion protein Commun. Biol. Pub Date : 2020-03-10 Weijia Luo; Yuan Dai; Zhishi Chen; Xiaojing Yue; Kelsey C. Andrade-Powell; Jiang Chang
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An integrative analysis of 5HTT -mediated mechanism of hyperactivity to non-threatening voices Commun. Biol. Pub Date : 2020-03-10 Chenyi Chen; Róger M. Martínez; Tsai-Tsen Liao; Chin-Yau Chen; Chih-Yung Yang; Yawei Cheng
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Applying deep learning to single-trial EEG data provides evidence for complementary theories on action control Commun. Biol. Pub Date : 2020-03-09 Amirali Vahid; Moritz Mückschel; Sebastian Stober; Ann-Kathrin Stock; Christian Beste
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RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging Commun. Biol. Pub Date : 2020-03-09 Young Hwan Chang; Koei Chin; Guillaume Thibault; Jennifer Eng; Erik Burlingame; Joe W. Gray
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Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn. Commun. Biol. Pub Date : 2020-03-06 Magdalena J Mayr,Matthias Zimmermann,Jason Dey,Andreas Brand,Bernhard Wehrli,Helmut Bürgmann
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NDRG1 activates VEGF-A-induced angiogenesis through PLCγ1/ERK signaling in mouse vascular endothelial cells. Commun. Biol. Pub Date : 2020-03-06 Kosuke Watari,Tomohiro Shibata,Hideaki Fujita,Ai Shinoda,Yuichi Murakami,Hideyuki Abe,Akihiko Kawahara,Hiroshi Ito,Jun Akiba,Shigeo Yoshida,Michihiko Kuwano,Mayumi Ono
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Synaptamide activates the adhesion GPCR GPR110 (ADGRF1) through GAIN domain binding. Commun. Biol. Pub Date : 2020-03-06 Bill X Huang,Xin Hu,Heung-Sun Kwon,Cheng Fu,Ji-Won Lee,Noel Southall,Juan Marugan,Hee-Yong Kim
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Pathway-specific enzymes from bamboo and crop leaves biosynthesize anti-nociceptive C-glycosylated flavones. Commun. Biol. Pub Date : 2020-03-06 Yuwei Sun,Zhuo Chen,Jingya Yang,Ishmael Mutanda,Shiyi Li,Qian Zhang,Ying Zhang,Yulian Zhang,Yong Wang
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Uncovering diversity and metabolic spectrum of animals in dead zone sediments. Commun. Biol. Pub Date : 2020-03-06 Elias Broman,Stefano Bonaglia,Oleksandr Holovachov,Ugo Marzocchi,Per O J Hall,Francisco J A Nascimento
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