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A signal transmission strategy driven by gap-regulated exonuclease hydrolysis for hierarchical molecular networks Commun. Biol. (IF 5.9) Pub Date : 2024-03-16 Xin Liu, Xun Zhang, Shuang Cui, Shujuan Xu, Rongming Liu, Bin Wang, Xiaopeng Wei, Qiang Zhang
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Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes Commun. Biol. (IF 5.9) Pub Date : 2024-03-16 Kevin S. Blake, Hirdesh Kumar, Anisha Loganathan, Emily E. Williford, Luke Diorio-Toth, Yao-Peng Xue, Wai Kwan Tang, Tayte P. Campbell, David D. Chong, Steven Angtuaco, Timothy A. Wencewicz, Niraj H. Tolia, Gautam Dantas
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Acoustic monitoring reveals a diel rhythm of an arctic seabird colony (little auk, Alle alle) Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Evgeny A. Podolskiy, Monica Ogawa, Jean-Baptiste Thiebot, Kasper L. Johansen, Anders Mosbech
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Identification of membrane curvature sensing motifs essential for VPS37A phagophore recruitment and autophagosome closure Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Yansheng Ye, Xinwen Liang, Guifang Wang, Maria C. Bewley, Kouta Hamamoto, Xiaoming Liu, John M. Flanagan, Hong-Gang Wang, Yoshinori Takahashi, Fang Tian
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Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Shaoheng Liang, Jinzhuang Dou, Ramiz Iqbal, Ken Chen
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Glutamine suppresses senescence and promotes autophagy through glycolysis inhibition-mediated AMPKα lactylation in intervertebral disc degeneration Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Yangyang Zhang, Zhengqi Huang, Weitao Han, Jiajun Wu, Shuangxing Li, Tianyu Qin, Chao Zhang, Ming Shi, Shun Han, Bo Gao, Song Jin, Yin Xiao, Kang Xu, Wei Ye
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Ca2+ oscillation in vascular smooth muscle cells control myogenic spontaneous vasomotion and counteract post-ischemic no-reflow Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Jinze Li, Yiyi Zhang, Dongdong Zhang, Wentao Wang, Huiqi Xie, Jiayu Ruan, Yuxiao Jin, Tingbo Li, Xuzhao Li, Bingrui Zhao, Xiaoxuan Zhang, Jiayi Lin, Hongjun Shi, Jie-Min Jia
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Characterization of Omicron BA.4.6, XBB, and BQ.1.1 subvariants in hamsters Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Peter J. Halfmann, Kiyoko Iwatsuki-Horimoto, Makoto Kuroda, Yuichiro Hirata, Seiya Yamayoshi, Shun Iida, Ryuta Uraki, Mutsumi Ito, Hiroshi Ueki, Yuri Furusawa, Yuko Sakai-Tagawa, Maki Kiso, Tammy Armbrust, Sam Spyra, Ken Maeda, Zhongde Wang, Masaki Imai, Tadaki Suzuki, Yoshihiro Kawaoka
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Anterior cingulate cross-hemispheric inhibition via the claustrum resolves painful sensory conflict Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Keisuke Koga, Kenta Kobayashi, Makoto Tsuda, Anthony E. Pickering, Hidemasa Furue
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Linking diet switching to reproductive performance across populations of two critically endangered mammalian herbivores Commun. Biol. (IF 5.9) Pub Date : 2024-03-15 Nick Harvey Sky, Jake Britnell, Rachael Antwis, Tyler Kartzinel, Daniel Rubenstein, Phil Toye, Benedict Karani, Regina Njeru, Jamie Gaymer, Samuel Mutisya, Susanne Shultz
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Disparity of cycad leaves dispels the living fossil metaphor Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Mario Coiro, Leyla Jean Seyfullah
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An optrode array for spatiotemporally-precise large-scale optogenetic stimulation of deep cortical layers in non-human primates Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Andrew M. Clark, Alexander Ingold, Christopher F. Reiche, Donald Cundy, Justin L. Balsor, Frederick Federer, Niall McAlinden, Yunzhou Cheng, John D. Rolston, Loren Rieth, Martin D. Dawson, Keith Mathieson, Steve Blair, Alessandra Angelucci
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The landscape of immune checkpoint-related long non-coding RNAs core regulatory circuitry reveals implications for immunoregulation and immunotherapy responses Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Changfan Qu, Hao Cui, Song Xiao, Longlong Dong, Qianyi Lu, Lei Zhang, Peng Wang, Mengyu Xin, Hui Zhi, Chenyu Liu, Shangwei Ning, Yue Gao
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One-pot method for preparing DNA, RNA, and protein for multiomics analysis Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Stephanie Biedka, Duah Alkam, Charity L. Washam, Svitlana Yablonska, Aaron Storey, Stephanie D. Byrum, Jonathan S. Minden
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OrgaSegment: deep-learning based organoid segmentation to quantify CFTR dependent fluid secretion Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Juliet W. Lefferts, Suzanne Kroes, Matthew B. Smith, Paul J. Niemöller, Natascha D. A. Nieuwenhuijze, Heleen N. Sonneveld van Kooten, Cornelis K. van der Ent, Jeffrey M. Beekman, Sam F. B. van Beuningen
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A neural network-based model framework for cell-fate decisions and development Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Mátyás Paczkó, Dániel Vörös, Péter Szabó, Gáspár Jékely, Eörs Szathmáry, András Szilágyi
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Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance Commun. Biol. (IF 5.9) Pub Date : 2024-03-14 Xiaohui He, Yoko Kusuya, Daisuke Hagiwara, Takahito Toyotome, Teppei Arai, Cai Bian, Masaki Nagayama, Saho Shibata, Akira Watanabe, Hiroki Takahashi
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Classification of likely functional class for ligand binding sites identified from fragment screening Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Javier S. Utgés, Stuart A. MacGowan, Callum M. Ives, Geoffrey J. Barton
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Post-ischemic ubiquitination at the postsynaptic density reversibly influences the activity of ischemia-relevant kinases Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Luvna Dhawka, Victoria Palfini, Emma Hambright, Ismary Blanco, Carrie Poon, Anja Kahl, Ulrike Resch, Ruchika Bhawal, Corinne Benakis, Vaishali Balachandran, Alana Holder, Sheng Zhang, Costantino Iadecola, Karin Hochrainer
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Mapping of facial and vocal processing in common marmosets with ultra-high field fMRI Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Audrey Dureux, Alessandro Zanini, Stefan Everling
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Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Michelle C. Jackson, Nikolai Friberg, Luis Moliner Cachazo, David R. Clark, Petra Thea Mutinova, Eoin J. O’Gorman, Rebecca L. Kordas, Bruno Gallo, Doris E. Pichler, Yulia Bespalaya, Olga V. Aksenova, Alexander Milner, Stephen J. Brooks, Nicholas Dunn, K.W.K. Lee, Jón S. Ólafsson, Gísli M. Gíslason, Lucia Millan, Thomas Bell, Alex J. Dumbrell, Guy Woodward
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Cell-particles interaction – selective uptake and transport of microdiamonds Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Armin M. Ebrahimi, Wojciech Gawlik, Adam M. Wojciechowski, Zenon Rajfur
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A platform-independent AI tumor lineage and site (ATLAS) classifier Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Nicholas R. Rydzewski, Yue Shi, Chenxuan Li, Matthew R. Chrostek, Hamza Bakhtiar, Kyle T. Helzer, Matthew L. Bootsma, Tracy J. Berg, Paul M. Harari, John M. Floberg, Grace C. Blitzer, David Kosoff, Amy K. Taylor, Marina N. Sharifi, Menggang Yu, Joshua M. Lang, Krishnan R. Patel, Deborah E. Citrin, Kaitlin E. Sundling, Shuang G. Zhao
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Endothelial SMAD1/5 signaling couples angiogenesis to osteogenesis in juvenile bone Commun. Biol. (IF 5.9) Pub Date : 2024-03-13 Annemarie Lang, Andreas Benn, Joseph M. Collins, Angelique Wolter, Tim Balcaen, Greet Kerckhofs, An Zwijsen, Joel D. Boerckel
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Cumulative nitrogen enrichment alters the drivers of grassland overyielding Commun. Biol. (IF 5.9) Pub Date : 2024-03-11 Miao He, Kathryn E. Barry, Merel B. Soons, Eric Allan, Seraina L. Cappelli, Dylan Craven, Jiří Doležal, Forest Isbell, Vojtěch Lanta, Jan Lepš, Maowei Liang, Norman Mason, Cecilia Palmborg, Noémie A. Pichon, Laíse da Silveira Pontes, Peter B. Reich, Christiane Roscher, Yann Hautier
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The eukaryotic-like characteristics of small GTPase, roadblock and TRAPPC3 proteins from Asgard archaea Commun. Biol. (IF 5.9) Pub Date : 2024-03-12 Linh T. Tran, Caner Akıl, Yosuke Senju, Robert C. Robinson
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A new method to experimentally quantify dynamics of initial protein–protein interactions Commun. Biol. (IF 5.9) Pub Date : 2024-03-12 Babu Reddy Janakaloti Narayanareddy, Nathan Reddy Allipeta, Jun Allard, Steven P. Gross
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The consequences of viral infection on protists Commun. Biol. (IF 5.9) Pub Date : 2024-03-11 Victoria Fulgencio Queiroz, Juliana Miranda Tatara, Bruna Barbosa Botelho, Rodrigo Araújo Lima Rodrigues, Gabriel Magno de Freitas Almeida, Jonatas Santos Abrahao
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Molecular architecture and platelet-activating properties of small immune complexes assembled on heparin and platelet factor 4 Commun. Biol. (IF 5.9) Pub Date : 2024-03-11 Yang Yang, Yi Du, Daniil Ivanov, Chendi Niu, Rumi Clare, James W. Smith, Ishac Nazy, Igor A. Kaltashov
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Dietary restriction modulates ultradian rhythms and autocorrelation properties in mice behavior Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Jackelyn Melissa Kembro, Ana Georgina Flesia, Victoria América Acosta-Rodríguez, Joseph S. Takahashi, Paula Sofía Nieto
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Bacteriophage therapy for the treatment of Mycobacterium tuberculosis infections in humanized mice Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Fan Yang, Alireza Labani-Motlagh, Jose Alejandro Bohorquez, Josimar Dornelas Moreira, Danish Ansari, Sahil Patel, Fabrizio Spagnolo, Jon Florence, Abhinav Vankayalapati, Tsuyoshi Sakai, Osamu Sato, Mitsuo Ikebe, Ramakrishna Vankayalapati, John J. Dennehy, Buka Samten, Guohua Yi
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An ex vivo animal model to study the effect of transverse mechanical loading on skeletal muscle Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Marisa Sargent, Alastair W. Wark, Sarah Day, Arjan Buis
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A single-agent fusion of human IL-2 and anti-IL-2 antibody that selectively expands regulatory T cells Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Yuan Lin, Xue Wang, Yuhao Qin, Chengpan Wang, Tang Zhou, Long Zhang, Lu Su, Wenming Ren, Cheng Liao
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A genome-wide association study based on the China Kadoorie Biobank identifies genetic associations between snoring and cardiometabolic traits Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Yunqing Zhu, Zhenhuang Zhuang, Jun Lv, Dianjianyi Sun, Pei Pei, Ling Yang, Iona Y. Millwood, Robin G. Walters, Yiping Chen, Huaidong Du, Fang Liu, Rebecca Stevens, Junshi Chen, Zhengming Chen, Liming Li, Canqing Yu
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Crosstalk of cell death pathways unveils an autophagy-related gene AOC3 as a critical prognostic marker in colorectal cancer Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Hui Xu, Haiyang Cui, Siyuan Weng, Yuyuan Zhang, Libo Wang, Zhe Xing, Xinwei Han, Zaoqu Liu
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ADAMTS4 is a crucial proteolytic enzyme for versican cleavage in the amnion at parturition Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Meng-Die Li, Jiang-Wen Lu, Fan Zhang, Wen-Jia Lei, Fan Pan, Yi-Kai Lin, Li-Jun Ling, Leslie Myatt, Wang-Sheng Wang, Kang Sun
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Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Tiansu Gong, Fusong Ju, Dongbo Bu
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Transcranial direct current stimulation suggests a causal role of the medial prefrontal cortex in learning social hierarchy Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Chen Qu, Yulong Huang, Rémi Philippe, Shenggang Cai, Edmund Derrington, Frédéric Moisan, Mengke Shi, Jean-Claude Dreher
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Molecular mechanism of siderophore regulation by the Pseudomonas aeruginosa BfmRS two-component system in response to osmotic stress Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Yingjie Song, Xiyu Wu, Ze Li, Qin qin Ma, Rui Bao
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MicroRNA-221-3p inhibits the inflammatory response of keratinocytes by regulating the DYRK1A/STAT3 signaling pathway to promote wound healing in diabetes Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Keyan Hu, Lei Liu, Songtao Tang, Xin Zhang, Hongfeng Chang, Wenyang Chen, Taotao Fan, Lesha Zhang, Bing Shen, Qiu Zhang
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FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries Commun. Biol. (IF 5.9) Pub Date : 2024-03-09 Daniele Montepietra, Giulio Tesei, João M. Martins, Micha B. A. Kunze, Robert B. Best, Kresten Lindorff-Larsen
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A two-sample Mendelian randomization study explores metabolic profiling of different glycemic traits Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Tommy H. T. Wong, Jacky M. Y. Mo, Mingqi Zhou, Jie V. Zhao, C. Mary Schooling, Baoting He, Shan Luo, Shiu Lun Au Yeung
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Memory reactivation in slow wave sleep enhances relational learning in humans Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Lorena Santamaria, Ibad Kashif, Niall McGinley, Penelope A. Lewis
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Orexin neurons play contrasting roles in itch and pain neural processing via projecting to the periaqueductal gray Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Tatsuroh Kaneko, Asuka Oura, Yoshiki Imai, Ikue Kusumoto-Yoshida, Takuro Kanekura, Hiroyuki Okuno, Tomoyuki Kuwaki, Hideki Kashiwadani
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Human cytomegalovirus infection triggers a paracrine senescence loop in renal epithelial cells Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Stefano Raviola, Gloria Griffante, Andrea Iannucci, Shikha Chandel, Irene Lo Cigno, Davide Lacarbonara, Valeria Caneparo, Selina Pasquero, Francesco Favero, Davide Corà, Elena Trisolini, Renzo Boldorini, Vincenzo Cantaluppi, Santo Landolfo, Marisa Gariglio, Marco De Andrea
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Speech-induced suppression during natural dialogues Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Joaquin E. Gonzalez, Nicolás Nieto, Pablo Brusco, Agustín Gravano, Juan E. Kamienkowski
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Diversity of sugar-diphospholipid-utilizing glycosyltransferase families Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Ida K. S. Meitil, Garry P. Gippert, Kristian Barrett, Cameron J. Hunt, Bernard Henrissat
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ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3Gal1) synthesis of Siglec ligands mediates anti-tumour immunity in prostate cancer Commun. Biol. (IF 5.9) Pub Date : 2024-03-06 Rebecca Garnham, Daniel Geh, Ryan Nelson, Erik Ramon-Gil, Laura Wilson, Edward N. Schmidt, Laura Walker, Beth Adamson, Adriana Buskin, Anastasia C. Hepburn, Kirsty Hodgson, Hannah Kendall, Fiona M. Frame, Norman Maitland, Kelly Coffey, Douglas W. Strand, Craig N. Robson, David J. Elliott, Rakesh Heer, Matthew Macauley, Jennifer Munkley, Luke Gaughan, Jack Leslie, Emma Scott
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The long noncoding RNA LAL contributes to salinity tolerance by modulating LHCB1s’ expression in Medicago truncatula Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Yang Zhao, Yafei Liu, Feiran Zhang, Zeng-Yu Wang, Kirankumar S. Mysore, Jiangqi Wen, Chuanen Zhou
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Modulatory effects of noradrenergic and serotonergic signaling pathway on neurovascular coupling Commun. Biol. (IF 5.9) Pub Date : 2024-03-08 Robert B. Renden, Adam Institoris, Kushal Sharma, Cam Ha T. Tran
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The cortical representation of language timescales is shared between reading and listening Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Catherine Chen, Tom Dupré la Tour, Jack L. Gallant, Daniel Klein, Fatma Deniz
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SAM68 directs STING signaling to apoptosis in macrophages Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Demi van der Horst, Naziia Kurmasheva, Mikkel H. S. Marqvorsen, Sonia Assil, Anna H. F. Rahimic, Christoph F. Kollmann, Leandro Silva da Costa, Qi Wu, Jian Zhao, Eleonora Cesari, Marie B. Iversen, Fanghui Ren, Trine I. Jensen, Ryo Narita, Vivien R. Schack, Bao-cun Zhang, Rasmus O. Bak, Claudio Sette, Robert A. Fenton, Jacob G. Mikkelsen, Søren R. Paludan, David Olagnier
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Repeat DNA methylation is modulated by adherens junction signaling Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Lisa-Marie Brenner, Florian Meyer, Haiqian Yang, Anja R. Köhler, Pavel Bashtrykov, Ming Guo, Albert Jeltsch, Cristiana Lungu, Monilola A. Olayioye
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Building trust in deep learning-based immune response predictors with interpretable explanations Commun. Biol. (IF 5.9) Pub Date : 2024-03-06 Piyush Borole, Ajitha Rajan
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Colonic in vitro fermentation of mycoprotein promotes shifts in gut microbiota, with enrichment of Bacteroides species Commun. Biol. (IF 5.9) Pub Date : 2024-03-05 Raffaele Colosimo, Hannah C. Harris, Jennifer Ahn-Jarvis, Perla Troncoso-Rey, Tim J. A. Finnigan, Pete J. Wilde, Frederick J. Warren
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Identification and characterization of CIM-1, a carbapenemase that adds to the family of resistance factors against last resort antibiotics Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Yu Wang, Sylvia A. Sapula, Jonathan J. Whittall, Jack M. Blaikie, Olga Lomovskaya, Henrietta Venter
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Exploring the limitations of mitochondrial dye as a genuine horizontal mitochondrial transfer surrogate Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Chuanfang Chen, Haige Li, Jia Zhang, Shih-Chin Cheng
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Correlative single-cell hard X-ray computed tomography and X-ray fluorescence imaging Commun. Biol. (IF 5.9) Pub Date : 2024-03-07 Zihan Lin, Xiao Zhang, Purbasha Nandi, Yuewei Lin, Liguo Wang, Yong S. Chu, Timothy Paape, Yang Yang, Xianghui Xiao, Qun Liu
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Cytotoxic Tph subset with low B-cell helper functions and its involvement in systemic lupus erythematosus Commun. Biol. (IF 5.9) Pub Date : 2024-03-06 Noriyasu Seki, Hideto Tsujimoto, Shuhei Tanemura, Shinji Kojima, Fumihiko Miyoshi, Jun Kikuchi, Shuntaro Saito, Mitsuhiro Akiyama, Kunio Sugahara, Keiko Yoshimoto, Yuko Kaneko, Kenji Chiba, Tsutomu Takeuchi
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Dynamic contrast optical coherence tomography (DyC-OCT) for label-free live cell imaging Commun. Biol. (IF 5.9) Pub Date : 2024-03-06 Chao Ren, Senyue Hao, Fei Wang, Abigail Matt, Marcello Magri Amaral, Daniel Yang, Leyao Wang, Chao Zhou