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Macroscopic Theory for Evolving Biological Systems Akin to Thermodynamics
Annual Review of Biophysics ( IF 12.4 ) Pub Date : 2018-05-24 00:00:00 , DOI: 10.1146/annurev-biophys-070317-033155
Kunihiko Kaneko 1 , Chikara Furusawa 2, 3
Affiliation  

We present a macroscopic theory to characterize the plasticity, robustness, and evolvability of biological responses and their fluctuations. First, linear approximation in intracellular reaction dynamics is used to demonstrate proportional changes in the expression of all cellular components in response to a given environmental stress, with the proportion coefficient determined by the change in growth rate as a consequence of the steady growth of cells. We further demonstrate that this relationship is supported through adaptation experiments of bacteria, perhaps too well as this proportionality is held even across cultures of different types of conditions. On the basis of simulations of cell models, we further show that this global proportionality is a consequence of evolution in which expression changes in response to environmental or genetic perturbations are constrained along a unique one-dimensional curve, which is a result of evolutionary robustness. It then follows that the expression changes induced by environmental changes are proportionally reduced across different components of a cell by evolution, which is akin to the Le Chatelier thermodynamics principle. Finally, with the aid of a fluctuation-response relationship, this proportionality is shown to hold between fluctuations caused by genetic changes and those caused by noise. Overall, these results and support from the theoretical and experimental literature suggest a formulation of cellular systems akin to thermodynamics, in which a macroscopic potential is given by the growth rate (or fitness) represented as a function of environmental and evolutionary changes.

中文翻译:


类似于热力学的进化生物学系统的宏观理论

我们提出了一种宏观理论来表征生物反应及其波动的可塑性,健壮性和可进化性。首先,细胞内反应动力学的线性近似被用于证明响应给定的环境压力,所有细胞成分表达的成比例变化,比例系数由细胞稳定生长的增长率决定。我们进一步证明了这种关系通过细菌的适应性实验得到了支持,也许即使在不同类型条件下的培养中也能保持这种比例性。根据细胞模型的模拟,我们进一步表明,这种全局比例性是进化的结果,其中响应于环境或遗传微扰的表达变化沿唯一的一维曲线受到约束,这是进化鲁棒性的结果。然后可以得出结论,环境的变化引起的表达变化通过进化在细胞的不同成分之间成比例地减少,这类似于勒查特利尔热力学原理。最终,借助于波动-响应关系,这种比例被证明在遗传变化引起的波动与噪声引起的波动之间保持不变。总体而言,这些结果以及理论和实验文献的支持表明,细胞系统类似于热力学,

更新日期:2018-05-24
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