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Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases.
Molecular Biology and Evolution ( IF 10.7 ) Pub Date : 2019-12-01 , DOI: 10.1093/molbev/msz185
Anurag Priyam 1 , Ben J Woodcroft 2 , Vivek Rai 3 , Ismail Moghul 1 , Alekhya Munagala 4 , Filip Ter 1 , Hiten Chowdhary 4 , Iwo Pieniak 1 , Lawrence J Maynard 1 , Mark Anthony Gibbins 5 , HongKee Moon 6 , Austin Davis-Richardson 7 , Mahmut Uludag 8 , Nathan S Watson-Haigh 9 , Richard Challis 10, 11 , Hiroyuki Nakamura 12 , Emeline Favreau 1 , Esteban A Gómez 1 , Tomás Pluskal 13 , Guy Leonard 14 , Wolfgang Rumpf 15 , Yannick Wurm 1, 16
Affiliation  

Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers.

中文翻译:

Sequenceserver:用于自定义BLAST数据库的现代图形用户界面。

比较新获得的和先前已知的核苷酸和氨基酸序列可支持现代生物学研究。BLAST是用于此类比较的成熟工具,但在新数据集上使用存在挑战。我们将以用户为中心的设计理念与可持续的软件开发方法相结合,创建了Sequenceserver,这是一种用于运行BLAST并在视觉上检查BLAST结果以进行生物学解释的工具。Sequenceserver使用简单的算法来防止潜在的分析错误,并提供基于文本和视觉的灵活输出,以支持研究人员的工作效率。我们的软件可以快速安装以供个人使用或在共享服务器上使用。
更新日期:2019-08-14
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