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The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
Genome Research ( IF 7 ) Pub Date : 2023-02-01 , DOI: 10.1101/gr.276963.122
Simon Bray 1 , John Chilton 2 , Matthias Bernt 3 , Nicola Soranzo 4 , Marius van den Beek 2 , Bérénice Batut 1 , Helena Rasche 5 , Martin Čech 2 , Peter J A Cock 6 , Björn Grüning 1 , Anton Nekrutenko 7
Affiliation  

There are thousands of well-maintained high-quality open-source software utilities for all aspects of scientific data analysis. For more than a decade, the Galaxy Project has been providing computational infrastructure and a unified user interface for these tools to make them accessible to a wide range of researchers. To streamline the process of integrating tools and constructing workflows as much as possible, we have developed Planemo, a software development kit for tool and workflow developers and Galaxy power users. Here we outline Planemo's implementation and describe its broad range of functionality for designing, testing, and executing Galaxy tools, workflows, and training material. In addition, we discuss the philosophy underlying Galaxy tool and workflow development, and how Planemo encourages the use of development best practices, such as test-driven development, by its users, including those who are not professional software developers.

中文翻译:

用于在 Galaxy 及其他地方开发、部署和执行科学数据分析的 Planemo 工具包

有数以千计维护良好的高质量开源软件实用程序,适用于科学数据分析的各个方面。十多年来,Galaxy Project 一直在为这些工具提供计算基础设施和统一的用户界面,以便广大研究人员可以使用它们。为了尽可能简化集成工具和构建工作流的过程,我们开发了 Planemo,这是一个面向工具和工作流开发人员以及 Galaxy 高级用户的软件开发工具包。在这里,我们概述了 Planemo 的实施,并描述了其用于设计、测试和执行 Galaxy 工具、工作流和培训材料的广泛功能。此外,我们讨论了 Galaxy 工具和工作流开发的基本理念,以及 Planemo 如何鼓励使用开发最佳实践,
更新日期:2023-02-01
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