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A competitive precision CRISPR method to identify the fitness effects of transcription factor binding sites
Nature Biotechnology ( IF 46.9 ) Pub Date : 2022-09-26 , DOI: 10.1038/s41587-022-01444-6
Päivi Pihlajamaa 1, 2 , Otto Kauko 1, 2, 3 , Biswajyoti Sahu 1, 4 , Teemu Kivioja 1, 2 , Jussi Taipale 1, 2, 5
Affiliation  

Here we describe a competitive genome editing method that measures the effect of mutations on molecular functions, based on precision CRISPR editing using template libraries with either the original or altered sequence, and a sequence tag, enabling direct comparison between original and mutated cells. Using the example of the MYC oncogene, we identify important transcriptional targets and show that E-box mutations at MYC target gene promoters reduce cellular fitness.



中文翻译:

一种具有竞争力的精确 CRISPR 方法,用于识别转录因子结合位点的适应度效应

在这里,我们描述了一种竞争性基因组编辑方法,该方法基于精确的 CRISPR 编辑,使用具有原始或改变序列的模板库和序列标签,可以直接比较原始细胞和突变细胞。以 MYC 致癌基因为例,我们确定了重要的转录靶点,并表明 MYC 靶基因启动子的 E-box 突变会降低细胞适应性。

更新日期:2022-09-27
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