Lake carbon (C) cycling is a key component of the global C cycle and associated C source and sink processes. The partial pressure of carbon dioxide (pCO₂) and carbon dioxide (CO₂) exchange flux at the lake-air interface (F_c) are controlled by complex physical, chemical, and biological mechanisms. It would be instructively significant to determine whether hydrological processes drive conversion shifts between C sources and sinks in floodplain-lake systems. Findings from this study show that exogenous input and in situ metabolism related to photosynthesis, respiration, and organic matter degradation were the main driving mechanisms of CO₂ absorption and release in a large floodplain-lake system (i.e., Lake Poyang). Moreover, the intense and frequent water-level fluctuations inherent to floodplain-lakes may also have a direct or indirect impact on C cycling processes and CO₂ exchange rates in floodplain-lake systems via their effect on physical processes, inorganic C transport, in-situ metabolic processes. We confirmed the potential of C source and sink conversion in floodplain-lakes under hydrological fluctuations, and strengthen the understanding of driving mechanisms of C source and sink conversion in floodplain systems.