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Computing R0 of dynamic models by a definition-based method
Infectious Disease Modelling Pub Date : 2022-05-24 , DOI: 10.1016/j.idm.2022.05.004
Xiaohao Guo 1 , Yichao Guo 1 , Zeyu Zhao 1, 2 , Shiting Yang 1 , Yanhua Su 1 , Benhua Zhao 1 , Tianmu Chen 1
Affiliation  

Objectives

Computing the basic reproduction number (R0) in deterministic dynamical models is a hot topic and is frequently demanded by researchers in public health. The next-generation methods (NGM) are widely used for such computation, however, the results of NGM are usually not to be the true R0 but only a threshold quantity with little interpretation. In this paper, a definition-based method (DBM) is proposed to solve such a problem.

Methods

Start with the definition of R0, consider different states that one infected individual may develop into, and take expectations. A comparison with NGM has proceeded. Numerical verification is performed using parameters fitted by data of COVID-19 in Hunan Province.

Results

DBM and NGM give identical expressions for single-host models with single-group and interactive Rij of single-host models with multi-groups, while difference arises for models partitioned into subgroups. Numerical verification showed the consistencies and differences between DBM and NGM, which supports the conclusion that R0 derived by DBM with true epidemiological interpretations are better.

Conclusions

DBM is more suitable for single-host models, especially for models partitioned into subgroups. However, for multi-host dynamic models where the true R0 is failed to define, we may turn to the NGM for the threshold R0.



中文翻译:

通过基于定义的方法计算动态模型的 R0

目标

在确定性动态模型中计算基本再生数 ( R 0 ) 是一个热门话题,并且经常受到公共卫生研究人员的要求。下一代方法(NGM)被广泛用于此类计算,然而,NGM的结果通常不是真正的R 0,而只是一个几乎没有解释的阈值量。在本文中,提出了一种基于定义的方法(DBM)来解决这样的问题。

方法

从R 0的定义开始,考虑一个感染者可能发展到的不同状态,并采取预期。已经进行了与 NGM 的比较。使用湖南省 COVID-19 数据拟合的参数进行数值验证。

结果

DBM 和 NGM 对具有单组的单主机模型和具有多组的单主机模型的交互式R ij给出相同的表达式,而对于划分为子组的模型则出现差异。数值验证显示了 DBM 和 NGM 之间的一致性和差异,这支持了DBM 推导出的具有真实流行病学解释的R 0更好的结论。

结论

DBM 更适用于单主机模型,尤其适用于划分为子组的模型。然而,对于真正的R 0无法定义的多主机动态模型,我们可以求助于 NGM 的阈值R 0

更新日期:2022-05-24
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