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Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology
Nature Genetics ( IF 30.8 ) Pub Date : 2021-12-06 , DOI: 10.1038/s41588-021-00973-1
Wouter van Rheenen 1 , Rick A A van der Spek 1 , Mark K Bakker 1 , Joke J F A van Vugt 1 , Paul J Hop 1 , Ramona A J Zwamborn 1 , Niek de Klein 2 , Harm-Jan Westra 2 , Olivier B Bakker 2 , Patrick Deelen 2, 3 , Gemma Shireby 4 , Eilis Hannon 4 , Matthieu Moisse 5, 6, 7 , Denis Baird 8, 9 , Restuadi Restuadi 10 , Egor Dolzhenko 11 , Annelot M Dekker 1 , Klara Gawor 1 , Henk-Jan Westeneng 1 , Gijs H P Tazelaar 1 , Kristel R van Eijk 1 , Maarten Kooyman 1 , Ross P Byrne 12 , Mark Doherty 12 , Mark Heverin 13 , Ahmad Al Khleifat 14 , Alfredo Iacoangeli 14, 15, 16 , Aleksey Shatunov 14 , Nicola Ticozzi 17, 18 , Johnathan Cooper-Knock 19 , Bradley N Smith 14 , Marta Gromicho 20 , Siddharthan Chandran 21, 22 , Suvankar Pal 21, 22 , Karen E Morrison 23 , Pamela J Shaw 19 , John Hardy 24 , Richard W Orrell 25 , Michael Sendtner 26 , Thomas Meyer 27 , Nazli Başak 28 , Anneke J van der Kooi 29 , Antonia Ratti 17, 30 , Isabella Fogh 14 , Cinzia Gellera 31 , Giuseppe Lauria 32, 33 , Stefania Corti 18, 34 , Cristina Cereda 35 , Daisy Sproviero 35 , Sandra D'Alfonso 36 , Gianni Sorarù 37 , Gabriele Siciliano 38 , Massimiliano Filosto 39 , Alessandro Padovani 39 , Adriano Chiò 40, 41 , Andrea Calvo 40, 41 , Cristina Moglia 40, 41 , Maura Brunetti 40 , Antonio Canosa 40, 41 , Maurizio Grassano 40 , Ettore Beghi 42 , Elisabetta Pupillo 42 , Giancarlo Logroscino 43 , Beatrice Nefussy 44 , Alma Osmanovic 45, 46 , Angelica Nordin 47 , Yossef Lerner 48, 49 , Michal Zabari 48, 49 , Marc Gotkine 48, 49 , Robert H Baloh 50, 51 , Shaughn Bell 50, 51 , Patrick Vourc'h 52, 53 , Philippe Corcia 53, 54 , Philippe Couratier 55, 56 , Stéphanie Millecamps 57 , Vincent Meininger 58 , François Salachas 57, 59 , Jesus S Mora Pardina 60 , Abdelilah Assialioui 61 , Ricardo Rojas-García 62 , Patrick A Dion 63, 64 , Jay P Ross 63, 65 , Albert C Ludolph 66 , Jochen H Weishaupt 67 , David Brenner 67 , Axel Freischmidt 66, 68 , Gilbert Bensimon 69, 70, 71, 72 , Alexis Brice 73 , Alexandra Durr 73 , Christine A M Payan 69 , Safa Saker-Delye 74 , Nicholas W Wood 75 , Simon Topp 14 , Rosa Rademakers 76 , Lukas Tittmann 77 , Wolfgang Lieb 77 , Andre Franke 78 , Stephan Ripke 79, 80, 81 , Alice Braun 81 , Julia Kraft 81 , David C Whiteman 82 , Catherine M Olsen 82 , Andre G Uitterlinden 83, 84 , Albert Hofman 84 , Marcella Rietschel 85, 86 , Sven Cichon 87, 88, 89, 90 , Markus M Nöthen 87, 88 , Philippe Amouyel 91 , , , , , Bryan J Traynor 92, 93 , Andrew B Singleton 94 , Miguel Mitne Neto 95 , Ruben J Cauchi 96 , Roel A Ophoff 97, 98, 99 , Martina Wiedau-Pazos 100 , Catherine Lomen-Hoerth 101 , Vivianna M van Deerlin 102 , Julian Grosskreutz 103, 104 , Annekathrin Roediger 103 , Nayana Gaur 103 , Alexander Jörk 103 , Tabea Barthel 103 , Erik Theele 103 , Benjamin Ilse 103 , Beatrice Stubendorff 103 , Otto W Witte 103 , Robert Steinbach 103 , Christian A Hübner 105 , Caroline Graff 106 , Lev Brylev 107, 108, 109 , Vera Fominykh 107, 109 , Vera Demeshonok 110 , Anastasia Ataulina 107 , Boris Rogelj 111, 112, 113 , Blaž Koritnik 114 , Janez Zidar 114 , Metka Ravnik-Glavač 115 , Damjan Glavač 116 , Zorica Stević 117 , Vivian Drory 44, 118 , Monica Povedano 61 , Ian P Blair 119 , Matthew C Kiernan 120 , Beben Benyamin 10, 121 , Robert D Henderson 122, 123 , Sarah Furlong 119 , Susan Mathers 124 , Pamela A McCombe 123, 125 , Merrilee Needham 126, 127, 128 , Shyuan T Ngo 122, 123, 125 , Garth A Nicholson 119, 129, 130 , Roger Pamphlett 131 , Dominic B Rowe 119 , Frederik J Steyn 123, 132 , Kelly L Williams 119 , Karen A Mather 133, 134 , Perminder S Sachdev 133, 135 , Anjali K Henders 10 , Leanne Wallace 10 , Mamede de Carvalho 20 , Susana Pinto 20 , Susanne Petri 45 , Markus Weber 136 , Guy A Rouleau 63, 64, 65 , Vincenzo Silani 17, 18 , Charles J Curtis 137, 138 , Gerome Breen 137, 138 , Jonathan D Glass 139 , Robert H Brown 140 , John E Landers 140 , Christopher E Shaw 14 , Peter M Andersen 47 , Ewout J N Groen 1 , Michael A van Es 1 , R Jeroen Pasterkamp 141 , Dongsheng Fan 142 , Fleur C Garton 10 , Allan F McRae 10 , George Davey Smith 9, 143 , Tom R Gaunt 9, 143 , Michael A Eberle 11 , Jonathan Mill 4 , Russell L McLaughlin 12 , Orla Hardiman 13 , Kevin P Kenna 1, 141 , Naomi R Wray 10, 125 , Ellen Tsai 8 , Heiko Runz 8 , Lude Franke 2 , Ammar Al-Chalabi 14, 144 , Philip Van Damme 5, 6, 7 , Leonard H van den Berg 1 , Jan H Veldink 1
Affiliation  

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease with a lifetime risk of one in 350 people and an unmet need for disease-modifying therapies. We conducted a cross-ancestry genome-wide association study (GWAS) including 29,612 patients with ALS and 122,656 controls, which identified 15 risk loci. When combined with 8,953 individuals with whole-genome sequencing (6,538 patients, 2,415 controls) and a large cortex-derived expression quantitative trait locus (eQTL) dataset (MetaBrain), analyses revealed locus-specific genetic architectures in which we prioritized genes either through rare variants, short tandem repeats or regulatory effects. ALS-associated risk loci were shared with multiple traits within the neurodegenerative spectrum but with distinct enrichment patterns across brain regions and cell types. Of the environmental and lifestyle risk factors obtained from the literature, Mendelian randomization analyses indicated a causal role for high cholesterol levels. The combination of all ALS-associated signals reveals a role for perturbations in vesicle-mediated transport and autophagy and provides evidence for cell-autonomous disease initiation in glutamatergic neurons.



中文翻译:

肌萎缩侧索硬化症的常见和罕见变异关联分析确定了具有不同遗传结构和神经元特异性生物学的 15 个风险位点

肌萎缩侧索硬化症 (ALS) 是一种致命的神经退行性疾病,一生中每 350 人中就有一人患病,并且对疾病缓解疗法的需求尚未得到满足。我们进行了一项跨祖先全基因组关联研究 (GWAS),纳入了 29,612 名 ALS 患者和 122,656 名对照者,确定了 15 个风险位点。当与 8,953 名个体的全基因组测序(6,538 名患者,2,415 名对照)和大型皮层衍生表达数量性状基因座 (eQTL) 数据集 (MetaBrain) 相结合时,分析揭示了基因座特异性遗传结构,在该结构中,我们通过罕见的基因优先顺序排列基因变异、短串联重复或调控效应。ALS 相关风险位点与神经退行性谱系中的多种特征相同,但在大脑区域和细胞类型之间具有不同的富集模式。在从文献中获得的环境和生活方式风险因素中,孟德尔随机分析表明高胆固醇水平具有因果作用。所有 ALS 相关信号的组合揭示了囊泡介导的运输和自噬中扰动的作用,并为谷氨酸能神经元中细胞自主疾病的起始提供了证据。

更新日期:2021-12-06
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