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Deep learning enables genetic analysis of the human thoracic aorta
Nature Genetics ( IF 30.8 ) Pub Date : 2021-11-26 , DOI: 10.1038/s41588-021-00962-4
James P Pirruccello 1, 2, 3, 4, 5 , Mark D Chaffin 3, 4 , Elizabeth L Chou 2, 6 , Stephen J Fleming 4, 7 , Honghuang Lin 8, 9 , Mahan Nekoui 3, 5 , Shaan Khurshid 1, 2, 3 , Samuel F Friedman 7 , Alexander G Bick 3, 10 , Alessandro Arduini 3, 4 , Lu-Chen Weng 2, 3 , Seung Hoan Choi 3 , Amer-Denis Akkad 4 , Puneet Batra 7 , Nathan R Tucker 11 , Amelia W Hall 3 , Carolina Roselli 3, 12 , Emelia J Benjamin 8, 13, 14 , Shamsudheen K Vellarikkal 3 , Rajat M Gupta 15 , Christian M Stegmann 4 , Dejan Juric 5, 16 , James R Stone 5, 17 , Ramachandran S Vasan 8, 13, 14 , Jennifer E Ho 1, 2, 5 , Udo Hoffmann 18, 19 , Steven A Lubitz 1, 2, 3, 5 , Anthony A Philippakis 7, 20 , Mark E Lindsay 1, 2, 3, 5, 21 , Patrick T Ellinor 1, 2, 3, 4, 5
Affiliation  

Enlargement or aneurysm of the aorta predisposes to dissection, an important cause of sudden death. We trained a deep learning model to evaluate the dimensions of the ascending and descending thoracic aorta in 4.6 million cardiac magnetic resonance images from the UK Biobank. We then conducted genome-wide association studies in 39,688 individuals, identifying 82 loci associated with ascending and 47 with descending thoracic aortic diameter, of which 14 loci overlapped. Transcriptome-wide analyses, rare-variant burden tests and human aortic single nucleus RNA sequencing prioritized genes including SVIL, which was strongly associated with descending aortic diameter. A polygenic score for ascending aortic diameter was associated with thoracic aortic aneurysm in 385,621 UK Biobank participants (hazard ratio = 1.43 per s.d., confidence interval 1.32–1.54, P = 3.3 × 10−20). Our results illustrate the potential for rapidly defining quantitative traits with deep learning, an approach that can be broadly applied to biomedical images.



中文翻译:

深度学习能够对人类胸主动脉进行遗传分析

主动脉扩大或动脉瘤容易发生夹层,这是猝死的一个重要原因。我们训练了一个深度学习模型来评估英国生物银行 460 万张心脏磁共振图像中胸主动脉升主动脉和降主动脉的尺寸。然后,我们对 39,688 名个体进行了全基因组关联研究,确定了 82 个与升主动脉直径相关的基因座和 47 个与降主动脉直径相关的基因座,其中 14 个基因座重叠。全转录组分析、罕见变异负荷测试和人主动脉单核 RNA 测序优先考虑了包括SVIL在内的基因,该基因与主动脉直径下降密切相关。在 385,621 名英国生物银行参与者中,升主动脉直径的多基因评分与胸主动脉瘤相关(风险比 = 1.43 per sd,置信区间 1.32–1.54,P = 3.3 × 10 -20)。我们的结果说明了通过深度学习快速定义数量特征的潜力,这种方法可以广泛应用于生物医学图像。

更新日期:2021-11-26
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