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Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence
Nature Genetics ( IF 30.8 ) Pub Date : 2021-10-18 , DOI: 10.1038/s41588-021-00928-6
Sarah Moody 1 , Sergey Senkin 2 , S M Ashiqul Islam 3, 4, 5 , Jingwei Wang 1 , Dariush Nasrollahzadeh 2, 6 , Ricardo Cortez Cardoso Penha 2 , Stephen Fitzgerald 1 , Erik N Bergstrom 3, 4, 5 , Joshua Atkins 2 , Yudou He 3, 4, 5 , Azhar Khandekar 3, 4, 5 , Karl Smith-Byrne 2 , Christine Carreira 7 , Valerie Gaborieau 2 , Calli Latimer 1 , Emily Thomas 1 , Irina Abnizova 1 , Pauline E Bucciarelli 1 , David Jones 1 , Jon W Teague 1 , Behnoush Abedi-Ardekani 2 , Stefano Serra 8 , Jean-Yves Scoazec 9 , Hiva Saffar 10 , Farid Azmoudeh-Ardalan 11 , Masoud Sotoudeh 6 , Arash Nikmanesh 6 , Hossein Poustchi 6 , Ahmadreza Niavarani 6 , Samad Gharavi 6 , Michael Eden 12 , Paul Richman 13 , Lia S Campos 14 , Rebecca C Fitzgerald 15 , Luis Felipe Ribeiro 16 , Sheila Coelho Soares-Lima 16 , Charles Dzamalala 17 , Blandina Theophil Mmbaga 18 , Tatsuhiro Shibata 19 , Diana Menya 20 , Alisa M Goldstein 21 , Nan Hu 21 , Reza Malekzadeh 6 , Abdolreza Fazel 22 , Valerie McCormack 23 , James McKay 2 , Sandra Perdomo 2 , Ghislaine Scelo 2, 24 , Estelle Chanudet 2 , Laura Humphreys 1 , Ludmil B Alexandrov 3, 4, 5 , Paul Brennan 2 , Michael R Stratton 1
Affiliation  

Esophageal squamous cell carcinoma (ESCC) shows remarkable variation in incidence that is not fully explained by known lifestyle and environmental risk factors. It has been speculated that an unknown exogenous exposure(s) could be responsible. Here we combine the fields of mutational signature analysis with cancer epidemiology to study 552 ESCC genomes from eight countries with varying incidence rates. Mutational profiles were similar across all countries studied. Associations between specific mutational signatures and ESCC risk factors were identified for tobacco, alcohol, opium and germline variants, with modest impacts on mutation burden. We find no evidence of a mutational signature indicative of an exogenous exposure capable of explaining differences in ESCC incidence. Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like (APOBEC)-associated mutational signatures single-base substitution (SBS)2 and SBS13 were present in 88% and 91% of cases, respectively, and accounted for 25% of the mutation burden on average, indicating that APOBEC activation is a crucial step in ESCC tumor development.



中文翻译:

来自八个不同发病率国家的食管鳞状细胞癌的突变特征

食管鳞状细胞癌 (ESCC) 的发病率存在显着差异,已知的生活方式和环境风险因素无法完全解释这一点。据推测,未知的外源性暴露可能是造成这种情况的原因。在这里,我们将突变特征分析领域与癌症流行病学相结合,以研究来自八个不同发病率国家的 552 个 ESCC 基因组。所有研究国家的突变概况都相似。确定了烟草、酒精、鸦片和种系变异的特定突变特征与 ESCC 风险因素之间的关联,对突变负担的影响适度。我们没有发现表明能够解释 ESCC 发病率差异的外源性暴露的突变特征的证据。载脂蛋白 B mRNA 编辑酶,

更新日期:2021-10-18
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