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Altered expression of microRNAs in the rat diaphragm in a model of ventilator-induced diaphragm dysfunction after controlled mechanical ventilation
BMC Genomics ( IF 4.4 ) Pub Date : 2021-09-18 , DOI: 10.1186/s12864-021-07970-y
Pengcheng Wang 1, 2 , Xianlong Zhou 1, 2 , Gang Li 3 , Haoli Ma 3 , Ruining Liu 1, 2 , Yan Zhao 1, 2
Affiliation  

Ventilator-induced diaphragm dysfunction (VIDD) is a common complication of life support by mechanical ventilation observed in critical patients in clinical practice and may predispose patients to severe complications such as ventilator-associated pneumonia or ventilator discontinuation failure. To date, the alterations in microRNA (miRNA) expression in the rat diaphragm in a VIDD model have not been elucidated. This study was designed to identify these alterations in expression. Adult male Wistar rats received conventional controlled mechanical ventilation (CMV) or breathed spontaneously for 12 h. Then, their diaphragm tissues were collected for RNA extraction. The miRNA expression alterations in diaphragm tissue were investigated by high-throughput microRNA-sequencing (miRNA-seq). For targeted mRNA functional analysis, gene ontology (GO) analyses and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were subsequently conducted. qRT-PCR validation and luciferase reporter assays were performed. We successfully constructed a model of ventilator-induced diaphragm dysfunction and identified 38 significantly differentially expressed (DE) miRNAs, among which 22 miRNAs were upregulated and 16 were downregulated. GO analyses identified functional genes, and KEGG pathway analyses revealed the signaling pathways that were most highly correlated, which were the MAPK pathway, FoxO pathway and Autophagy–animal. Luciferase reporter assays showed that STAT3 was a direct target of both miR-92a-1-5p and miR-874-3p and that Trim63 was a direct target of miR-3571. The current research supplied novel perspectives on miRNAs in the diaphragm, which may not only be implicated in diaphragm dysfunction pathogenesis but could also be considered as therapeutic targets in diaphragm dysfunction.

中文翻译:

在控制机械通气后呼吸机诱导的膈肌功能障碍模型中大鼠膈肌中 microRNA 的表达改变

呼吸机引起的膈肌功能障碍(VIDD)是临床实践中在危重患者中观察到的机械通气生命支持的常见并发症,可能使患者易患呼吸机相关性肺炎或呼吸机停药失败等严重并发症。迄今为止,尚未阐明 VIDD 模型中大鼠隔膜中 microRNA (miRNA) 表达的改变。本研究旨在鉴定这些表达的改变。成年雄性 Wistar 大鼠接受常规控制机械通气 (CMV) 或自主呼吸 12 小时。然后,收集他们的隔膜组织用于 RNA 提取。通过高通量 microRNA 测序 (miRNA-seq) 研究隔膜组织中 miRNA 表达的变化。对于靶向 mRNA 功能分析,随后进行了基因本体 (GO) 分析和京都基因和基因组百科全书 (KEGG) 通路分析。进行了 qRT-PCR 验证和荧光素酶报告基因检测。我们成功构建了呼吸机诱导的膈肌功能障碍模型,并鉴定出 38 个显着差异表达 (DE) miRNA,其中 22 个 miRNAs 上调,16 个下调。GO 分析确定了功能基因,KEGG 通路分析揭示了相关性最高的信号通路,即 MAPK 通路、FoxO 通路和自噬动物。荧光素酶报告基因检测表明,STAT3 是 miR-92a-1-5p 和 miR-874-3p 的直接靶标,而 Trim63 是 miR-3571 的直接靶标。目前的研究为隔膜中的 miRNA 提供了新的视角,
更新日期:2021-09-19
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