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Molecular epidemiology of respiratory syncytial virus among children and adults in India 2016 to 2018
Virus Genes ( IF 1.6 ) Pub Date : 2021-09-15 , DOI: 10.1007/s11262-021-01859-4
Suresh S Bandla 1 , Santhosha Devadiga 1 , Rushil Bhatt 1 , Oliver C Dsa 1 , Arunkumar Govindakarnavar 1, 2
Affiliation  

Respiratory syncytial virus (RSV) is a common cause of respiratory tract infections among children less than 5 years of age and the elderly. This study intended to determine the circulating genotypes of RSV among severe acute respiratory illness (SARI) cases during the period 2016–2018 in India, among hospitalized acute febrile illness cases of age ranging from 1 to 65 years. Throat/nasopharyngeal swab samples were subjected for testing RSV and subgroups by real-time reverse transcriptase polymerase chain reaction (RT-PCR), further sequencing and phylogenetic analysis were performed for the second hypervariable region of the G gene. RSV-A and B subtypes co-circulated during the years 2016, 2017, and 2018, with RSV-A as the dominant subtype in 2016, and RSV-B as the dominant subgroup in 2017 and 2018. Phylogenetic analysis revealed that the circulating genotypes of RSV were GA2 (16/16), of RSV-A, and GB5 (23/23) of RSV-B in the South, North, and Northeast region of India during the period between 2016 and 2018. Here we report the first study comprising the distribution of RSV-A and B genotypes in the different geographic regions of India among children and adults during the year 2016 to 2018. We also report GA2.3.7 lineage of GA2 genotype for the first time in India to the best of our knowledge.



中文翻译:

2016-2018年印度儿童和成人呼吸道合胞病毒分子流行病学

呼吸道合胞病毒 (RSV) 是 5 岁以下儿童和老年人呼吸道感染的常见原因。本研究旨在确定 2016 年至 2018 年期间印度严重急性呼吸道疾病 (SARI) 病例中 RSV 的循环基因型,这些病例的年龄在 1 至 65 岁之间。通过实时逆转录酶聚合酶链反应(RT-PCR)对咽喉/鼻咽拭子样本进行RSV和亚组检测,对G基因的第二个高变区进行进一步测序和系统发育分析。RSV-A 和 B 亚型在 2016 年、2017 年和 2018 年共同流行,其中 RSV-A 是 2016 年的主要亚型,RSV-B 是 2017 年和 2018 年的主要亚型。

更新日期:2021-09-16
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