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Correction to: Post-diapause transcriptomic restarts: insight from a high-latitude copepod
BMC Genomics ( IF 4.4 ) Pub Date : 2021-09-14 , DOI: 10.1186/s12864-021-07868-9
Vittoria Roncalli 1, 2 , Matthew C Cieslak 1 , Ann M Castelfranco 1 , Russell R Hopcroft 3 , Daniel K Hartline 1 , Petra H Lenz 1
Affiliation  

Correction to: BMC Genomics 22, 409 (2021)

https://doi.org/10.1186/s12864-021-07557-7

Following publication of the original article [1], it was reported that due to a typesetting error the incorrect versions of Figs. 4, 7, 9 and 10 were published. The correct figures are given in this Correction article.

Fig. 4
figure1

Tricarboxylic acid cycle (TCA) and oxidative phosphorylation. a Schematic representation for tricarboxylic acid cycle (TCA) adapted from Wikimedia Commons (https://commons.wikimedia.org/wiki/File:Cycle_de_krebs.png). For each step of the TCA cycle intermediate products, enzymes (bold) and coenzymes (FAD and NAD+) are indicated. For each enzyme, heatmaps show relative expression (z-score) in females from T0 to T14d. b KEGG pathway diagram (map 00190) including gene expression results for the five genes among the DEGs in N. flemingeri. The upper part of the figure shows the five respiratory chain complexes with the corresponding E.C. numbers for each enzyme. In the bottom part, heatmaps show relative expression (z-score) of each enzyme associated with the respiratory chain complex in females from T0 to T14d. All enzymes shown were identified as DEGs. Copyright permission to use and adapt the KEGG map 00190 has been granted from KEGG database [18]

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Fig. 7
figure2

RNA metabolism and chromatin silencing. Heatmap of the differentially expressed genes (n = 198) annotated with GO terms associated with chromatin silencing and RNA metabolism (see Fig. 6). Genes (rows) were ordered based on modules (left) for which they were enriched (see Fig. 5). For each gene, relative expression is shown as the average z-score for each timepoint as indicated by the color scale. Timepoints are indicated at the top of the heatmap. Labels on the right indicate processes that were highly represented in each module

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Fig. 9
figure3

Multicellular organism development and immune system process. Heatmap of the differentially expressed genes annotated with GO terms associated with: a multicellular organism development (n = 108) and b immune system process (n = 61) (see Fig. 6). Genes (rows) were ordered based on modules (left) for which they were enriched (see Fig. 5). For each gene, relative expression is shown as the average z-score for each timepoint as indicated by the color scale. Timepoints are indicated at the top of the heatmap

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Fig. 10
figure4

Reproductive program and metabolic processess. Heatmap of the differentially expressed genes annotated with GO terms associated with a oogenesis (n = 54) and b metabolic processes: glycolysis (n = 9), β-oxidation (n = 4), lipase activity (n = 27), epoxigenase activity (n = 9) and digestion (n = 19) (see Fig. 6). Genes (rows) were ordered based on modules (left) for which they were enriched (see Fig. 5). For each gene, relative expression is shown as the average z-score for each timepoint as indicated by the color scale. Timepoints are indicated at the top of the heatmap. Labels on the right indicate processes that were highly represented in each module

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The original article has been updated.

  1. 1.

    Roncalli V, Cieslak MC, Castelfranco AM, Hopcroft RR, Hartline DK, Lenz PH. Post-diapause transcriptomic restarts: insight from a high-latitude copepod. BMC Genomics. 2021;22(1):409. https://doi.org/10.1186/s12864-021-07557-7.

    CAS Article PubMed PubMed Central Google Scholar

  2. 43.

    Desgraupes B. clusterCrit: Clustering Indices. R package version 1.2. 6; 2015.

    Google Scholar

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Affiliations

  1. Pacific Biosciences Research Center, University of Hawai’i at Mānoa, 1993 East-West Rd, Honolulu, HI, 96822, USA

    Vittoria Roncalli, Matthew C. Cieslak, Ann M. Castelfranco, Daniel K. Hartline & Petra H. Lenz

  2. Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Naples, Italy

    Vittoria Roncalli

  3. Institute of Marine Science, University of Alaska, Fairbanks, 120 O’Neill, Fairbanks, AK, 99775-7220, USA

    Russell R. Hopcroft

Authors
  1. Vittoria RoncalliView author publications

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  2. Matthew C. CieslakView author publications

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  3. Ann M. CastelfrancoView author publications

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  4. Russell R. HopcroftView author publications

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  5. Daniel K. HartlineView author publications

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  6. Petra H. LenzView author publications

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Corresponding author

Correspondence to Vittoria Roncalli.

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Roncalli, V., Cieslak, M.C., Castelfranco, A.M. et al. Correction to: Post-diapause transcriptomic restarts: insight from a high-latitude copepod. BMC Genomics 22, 659 (2021). https://doi.org/10.1186/s12864-021-07868-9

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  • DOI: https://doi.org/10.1186/s12864-021-07868-9



中文翻译:

更正:滞育后转录组学重新启动:来自高纬度桡足类的洞察

更正:BMC Genomics 22, 409 (2021)

https://doi.org/10.1186/s12864-021-07557-7

在原始文章 [1] 发表后,据报道,由于排版错误,图 4、7、9 和 10 已出版。此更正文章中给出了正确的数字。

图 4
图1

三羧酸循环 (TCA) 和氧化磷酸化。一个用于三羧酸循环(TCA)示意图改编自维基共享资源(https://commons.wikimedia.org/wiki/File:Cycle_de_krebs.png)。对于 TCA 循环中间产物的每个步骤,都标出了酶(粗体)和辅酶(FAD 和 NAD+)。对于每种酶,热图显示了女性从 T0 到 T14d 的相对表达(z 分数)。b KEGG 通路图(地图 00190),包括N. flemingeri 中DEG 中五个基因的基因表达结果. 图的上半部分显示了五种呼吸链复合物,每种酶具有相应的 EC 编号。在底部,热图显示了与女性呼吸链复合体相关的每种酶的相对表达(z 分数),从 T0 到 T14d。显示的所有酶均被鉴定为DEG。KEGG 数据库 [18] 已授予使用和改编 KEGG 地图 00190 的版权许可

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图 7
图2

RNA 代谢和染色质沉默。差异表达基因的热图(n  = 198)用与染色质沉默和 RNA 代谢相关的 GO 术语注释(见图 6)。基因(行)根据它们被丰富的模块(左)排序(见图 5)。对于每个基因,相对表达显示为每个时间点的平均 z 分数,如色标所示。时间点显示在热图的顶部。右侧的标签表示每个模块中高度代表的流程

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图 9
图3

多细胞生物发育和免疫系统过程。与相关联的GO术语注释的差异表达的基因的热图:一个多细胞生物发育(Ñ  = 108)和b免疫系统处理(Ñ  = 61)(参见图6)。基因(行)根据它们被丰富的模块(左)排序(见图 5)。对于每个基因,相对表达显示为每个时间点的平均 z 分数,如色标所示。时间点显示在热图的顶部

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图 10
图4

生殖程序和代谢过程。与相关联的GO术语注释的差异表达的基因热图一个卵子发生(Ñ  = 54)和b代谢过程:糖酵解(Ñ  = 9),β氧化(Ñ  = 4),脂肪酶活性(Ñ  = 27),epoxigenase活性( n  = 9) 和消化 ( n = 19)(见图 6)。基因(行)根据它们被丰富的模块(左)排序(见图 5)。对于每个基因,相对表达显示为每个时间点的平均 z 分数,如色标所示。时间点显示在热图的顶部。右侧的标签表示每个模块中高度代表的流程

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原文章已更新。

  1. 1.

    Roncalli V、Cieslak MC、Castelfranco AM、Hopcroft RR、Hartline DK、Lenz PH。滞育后转录组学重新启动:来自高纬度桡足类动物的洞察力。BMC基因组学。2021;22(1):409。https://doi.org/10.1186/s12864-021-07557-7。

    CAS 文章 PubMed PubMed Central Google Scholar

  2. 43.

    Desgraupes B. clusterCrit:聚类指数。R 包版本 1.2。6; 2015 年。

    谷歌学术

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隶属关系

  1. 太平洋生物科学研究中心,夏威夷大学马诺阿分校,1993 East-West Rd, Honolulu, HI, 96822, USA

    Vittoria Roncalli、Matthew C. Cieslak、Ann M. Castelfranco、Daniel K. Hartline 和 Petra H. Lenz

  2. 综合海洋生态部,Stazione Zoologica Anton Dohrn,那不勒斯,意大利

    维多利亚·朗卡利

  3. 阿拉斯加大学海洋科学研究所,费尔班克斯,120 O'Neill, Fairbanks, AK, 99775-7220, USA

    罗素·R·霍普克罗夫特

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与维多利亚·朗卡利(Vittoria Roncalli)的通信。

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引用这篇文章

Roncalli, V., Cieslak, MC, Castelfranco, AM等。更正:滞育后转录组学重新启动:来自高纬度桡足类动物的洞察力。BMC 基因组学 22, 659 (2021)。https://doi.org/10.1186/s12864-021-07868-9

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  • DOI : https://doi.org/10.1186/s12864-021-07868-9

更新日期:2021-09-14
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