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Mutational profiling of myeloid neoplasms associated genes may aid the diagnosis of acute myeloid leukemia with myelodysplasia-related changes
Leukemia Research ( IF 2.7 ) Pub Date : 2021-08-31 , DOI: 10.1016/j.leukres.2021.106701
James Yu 1 , Yuan Du 2 , Anum Jalil 1 , Zohaib Ahmed 1 , Shahram Mori 3 , Rushang Patel 3 , Juan Carlos Varela 3 , Chung-Che Chang 4
Affiliation  

AML with myelodysplasia-related changes (AML-MRC) is a subtype of AML known to have adverse prognosis. The karyotype abnormalities in AML-MRC have been well established; however, relatively little has been known about the role of gene mutation profiles by next generation sequencing. 177 AML patients (72 AML-MRC and 105 non-MRC AML) were analyzed by NGS panel covering 53 AML related genes. AML-MRC showed statistically significantly higher frequency of TP53 mutation, but lower frequencies of mutations in NPM1, FLT3-ITDLow, FLT3-ITDHigh, FLT3-TKD, NRAS, and PTPN11 than non-MRC AML. Supervised tree-based classification models including Decision tree, Random forest, and XGboost, and logistic regression were used to evaluate if the mutation profiles could be used to aid the diagnosis of AML-MRC. All methods showed good accuracy in differentiating AML-MRC from non-MRC AML with AUC (area under curve) of ROC ranging from 0.69 to 0.78. Additionally, logistic regression indicated 3 independent factors (age and mutations of TP53 and FLT3) could aid the diagnosis AML-MRC. Using weighted factors, a AML-MRC risk scoring equation was established for potential application in clinical setting: +1x(Age ≥ 65) + 3 x (TP53 mutation) – 2 x (FLT3 mutation). Using a cutoff score of 0, the accuracy of the risk score was 0.76 with sensitivity of 0.77 and specificity of 0.75 for predicting the diagnosis of AML-MRC. Further studies with larger sample sizes are warranted to further evaluate the potential of using gene mutation profiles to aid the diagnosis of AML-MRC.



中文翻译:

髓系肿瘤相关基因的突变分析可能有助于诊断伴有骨髓增生异常相关变化的急性髓系白血病

AML 伴骨髓增生异常相关变化 (AML-MRC) 是已知预后不良的 AML 亚型。AML-MRC 的核型异常已被很好地确定;然而,对于下一代测序的基因突变谱的作用知之甚少。177 名 AML 患者(72 名 AML-MRC 和 105 名非 MRC AML)通过涵盖 53 个 AML 相关基因的 NGS panel 进行分析。AML-MRC 显示出统计学上显着更高的TP53突变频率,但在NPM1FLT3 -ITD LowFLT3 -ITD HighFLT3 -TKD、NRAS 和 PTPN11 中的突变频率较低比非 MRC AML。使用决策树、随机森林和 XGboost 等基于监督的树分类模型和逻辑回归来评估突变谱是否可用于辅助 AML-MRC 的诊断。所有方法在区分 AML-MRC 和非 MRC AML 方面表现出良好的准确性,ROC 的 AUC(曲线下面积)范围为 0.69 至 0.78。此外,逻辑回归表明 3 个独立因素(年龄和 TP53 和 FLT3 突变)可以帮助诊断 AML-MRC。使用加权因子,建立了一个 AML-MRC 风险评分方程,以用于临床环境中的潜在应用:+1x(A ge ≥ 65)+ 3 x(TP53突变)– 2 x(FLT3突变)。使用截止分数 0,风险评分的准确性为 0.76,敏感性为 0.77,特异性为 0.75,用于预测 AML-MRC 的诊断。需要更大样本量的进一步研究,以进一步评估使用基因突变谱来帮助诊断 AML-MRC 的潜力。

更新日期:2021-08-31
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