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Impact of KMN network genes on progression and prognosis of non-small cell lung cancer.
Anti-Cancer Drugs ( IF 2.3 ) Pub Date : 2021-08-19 , DOI: 10.1097/cad.0000000000001220
Han Gao 1 , Qing-Yun Pan , Ying-Ju Wang , Quan-Fang Chen
Affiliation  

The Knl1-Mis12-Ndc80 (KMN) network genes (including KNL, MIS12 and NDC80 complexes) encode a highly conserved network of protein complexes that act in cell mitosis. In recent years, multiple studies revealed that KMN network genes also play a vital role in tumor appearance and growth. However, the role of the KMN gene network in non-small cell lung cancer (NSCLC) remains unknown. In this study, we analyzed the effects of KMN genes expression and clinical phenotype in patients with lung adenocarcinoma (LUAD). The expression of KMN network genes and related clinical information was extracted from The Cancer Genome Atlas. The samples were classified into cluster I and II by consistent clustering. We analyzed the gene distribution by principal component analysis, and the potential risk characteristics were analyzed using the least absolute shrinkage and selection operator Cox regression algorithm. Univariate and multivariate Cox regression analyses were used to analyze the clinical information. The Database for Annotation, Visualization, and Integrated Discovery, Gene MANIA and gene set enrichment analysis were used to analyze function and correlation among genes of the KMN network. The expression levels of nine out of ten KMN genes were significantly up-regulated in LUAD and were associated with poor overall survival (OS). Higher expression of NDC80 and KNL1 was related to low OS in both univariate and multivariate analyses. According to two independent prognostic KMN network genes (KNL1 and NDC80), a risk signature was established to predict the prognosis of patients with LUAD. Additionally, the genes NDC80 and KNL1 were considerably enriched in pathways associated with signaling pathways, biological processes, and the cell cycle. The results indicate that KMN network genes are intimately related to lung adenocarcinoma. KMN network genes are involved in the malignant process of LUAD. Assessment of NDC80 and KNL1 might be helpful for prognostic stratification and treatment strategy development.

中文翻译:

KMN网络基因对非小细胞肺癌进展和预后的影响。

Knl1-Mis12-Ndc80 (KMN) 网络基因(包括 KNL、MIS12 和 NDC80 复合物)编码在细胞有丝分裂中起作用的高度保守的蛋白质复合物网络。近年来,多项研究表明KMN网络基因在肿瘤的出现和生长中也发挥着至关重要的作用。然而,KMN 基因网络在非小细胞肺癌 (NSCLC) 中的作用仍不清楚。在本研究中,我们分析了 KMN 基因表达和肺腺癌 (LUAD) 患者临床表型的影响。KMN网络基因的表达和相关临床信息提取自癌症基因组图谱。通过一致性聚类将样本分为簇I和簇II。我们通过主成分分析来分析基因分布,并使用最小绝对收缩和选择算子Cox回归算法来分析潜在的风险特征。使用单变量和多变量Cox回归分析来分析临床信息。使用注释、可视化和集成发现数据库、Gene MANIA 和基因集富集分析来分析 KMN 网络基因之间的功能和相关性。LUAD 中十分之九的 KMN 基因的表达水平显着上调,并且与较差的总生存期 (OS) 相关。在单变量和多变量分析中,NDC80 和 KNL1 的较高表达与低 OS 相关。根据两个独立的预后KMN网络基因(KNL1和NDC80),建立风险特征来预测LUAD患者的预后。此外,基因 NDC80 和 KNL1 在与信号传导途径、生物过程和细胞周期相关的途径中显着富集。结果表明KMN网络基因与肺腺癌密切相关。KMN网络基因参与了LUAD的恶性过程。NDC80 和 KNL1 的评估可能有助于预后分层和治疗策略的制定。
更新日期:2021-08-19
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