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Human astrovirus types 1, 4 and 5 circulating among children with acute gastroenteritis in a rural Brazilian state, 2010-2016
Archives of Virology ( IF 2.7 ) Pub Date : 2021-08-21 , DOI: 10.1007/s00705-021-05206-8
Adriana Luchs 1 , Kaelan Tardy 2 , Roozbeh Tahmasebi 2 , Simone Guadagnucci Morillo 1 , Flavio Augusto de Pádua Milagres 3, 4 , Vanessa Dos Santos Morais 2 , Rafael Brustulin 3, 4 , Maria da Aparecida Rodrigues Teles 4 , Lais Sampaio de Azevedo 1 , Ellen Viana de Souza 1 , Roberta Salzone Medeiros 1 , Yasmin França Viana Pires de Souza 1 , Emerson Luiz Lima Araújo 5 , Steven S Witkin 2, 6 , Xutao Deng 7, 8 , Eric Delwart 7, 8 , Ester Cerdeira Sabino 2 , Elcio Leal 9 , Antonio Charlys da Costa 2
Affiliation  

This study combined conventional epidemiology of human astroviruses. From 2010 to 2016, 232 stool samples from children under 5 years of age were screened using NGS and conventional RT-PCR followed by genetic analysis in order to investigate the genotypic diversity of classical human astrovirus (HAstV) circulating in Tocantins State, Brazil. HAstV was detected in 16 cases (6.9%). Seven specimens (43.7%; 7/16) were positive according RT-PCR and next-generation sequencing (NGS) to investigate the molecular to both NGS and RT-PCR. NGS and RT-PCR individually revealed six (37.5%; 6/16) and three (18.8%; 3/16) additional positive samples, respectively. Sequencing of the HAstV-positive samples revealed HAstV-1a (9/16), HAstV-4c (3/16), and HAstV-5c (4/16) lineages.



中文翻译:

2010-2016 年在巴西农村地区患有急性胃肠炎的儿童中传播的 1、4 和 5 型人类星状病毒

这项研究结合了人类星状病毒的常规流行病学。从 2010 年到 2016 年,为了研究在巴西托坎廷斯州流行的经典人类星状病毒 (HAstV) 的基因型多样性,使用 NGS 和常规 RT-PCR 筛选了 232 份 5 岁以下儿童的粪便样本,然后进行了遗传分析。在 16 例 (6.9%) 中检测到 HAstV。根据 RT-PCR 和下一代测序 (NGS) 研究 NGS 和 RT-PCR 的分子,七个样本 (43.7%;7/16) 呈阳性。NGS 和 RT-PCR 分别显示六个(37.5%;6/16)和三个(18.8%;3/16)额外的阳性样本。HAstV 阳性样本的测序揭示了 HAstV-1a (9/16)、HAstV-4c (3/16) 和 HAstV-5c (4/16) 谱系。

更新日期:2021-10-07
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