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A second capsidless hadakavirus strain with 10 positive-sense single-stranded RNA genomic segments from Fusarium nygamai
Archives of Virology ( IF 2.7 ) Pub Date : 2021-07-27 , DOI: 10.1007/s00705-021-05176-x
Haris Ahmed Khan 1, 2 , Yukiyo Sato 2 , Hideki Kondo 2 , Atif Jamal 3 , Muhammad Faraz Bhatti 1 , Nobuhiro Suzuki 2
Affiliation  

A unique capsidless virus with a positive-sense, single-stranded RNA genome (hadakavirus 1, HadV1), a member of the extended picorna-like supergroup, was isolated previously from the phytopathogenic fungus Fusarium oxysporum. Here, we describe the molecular and biological characterisation of a second hadakavirus strain from Fusarium nygamai, which has not been investigated in detail previously as a virus host. This virus, hadakavirus 1 strain 1NL (HadV1-1NL), has features similar to the first hadakavirus, HadV1-7n, despite having a different number of segments (10 for HadV1-1NL vs. 11 for HadV1-7n). The 10 genomic RNA segments of HadV1-1NL range in size from 0.9 kb to 2.5 kb. All HadV1-1NL segments show 67% to 86% local nucleotide sequence identity to their HadV1-7n counterparts, whereas HadV1-1NL has no homolog of HadV1-7n RNA8, which encodes a zinc-finger motif. Another interesting feature is the possible coding incapability of HadV1-1NL RNA10. HadV1-1NL was predicted to be capsidless based on the RNase A susceptibility of its replicative form dsRNA. Phenotypic comparison of multiple virus-infected and virus-free single-spore isolates indicated asymptomatic infection by HadV1-1NL. Less-efficient vertical transmission via spores was observed as the infected fungal colonies from which the spores were derived became older, as was observed for HadV1-7n. This study shows a second example of a hadakavirus that appears to have unusual features.



中文翻译:

具有 10 个正链 RNA 基因组片段的第二个无衣壳 hadakavirus 菌株来自镰刀菌

先前从植物病原真菌尖孢镰刀菌 ( Fusarium oxysporum ) 中分离出一种独特的无衣壳病毒,具有正链单链 RNA 基因组 (hadakavirus 1, HadV1),它是扩展的 picorna 样超群的成员。在这里,我们描述了来自Fusarium nygamai的第二个 hadakavirus 毒株的分子和生物学特征,之前没有作为病毒宿主进行过详细调查。这种病毒,即 hadakavirus 1 毒株 1NL (HadV1-1NL),具有与第一种 hadakavirus HadV1-7n 相似的特征,尽管其片段数量不同(HadV1-1NL 为 10,而 HadV1-7n 为 11)。HadV1-1NL 的 10 个基因组 RNA 片段的大小范围从 0.9 kb 到 2.5 kb。所有 HadV1-1NL 片段与其 HadV1-7n 对应物显示 67% 至 86% 的局部核苷酸序列同一性,而 HadV1-1NL 没有 HadV1-7n RNA8 的同源物,后者编码锌指基序。另一个有趣的特征是 HadV1-1NL RNA10 可能无法编码。根据其复制形式 dsRNA 的 RNase A 敏感性,预测 HadV1-1NL 是无衣壳的。多种病毒感染和无病毒单孢子分离株的表型比较表明 HadV1-1NL 无症状感染。正如对 HadV1-7n 所观察到的那样,随着产生孢子的受感染真菌菌落变老,观察到通过孢子进行的垂直传播效率较低。这项研究显示了哈达卡病毒的第二个例子,它似乎具有不寻常的特征。

更新日期:2021-09-07
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