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Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation
Nature Immunology ( IF 30.5 ) Pub Date : 2021-07-26 , DOI: 10.1038/s41590-021-00975-5
Mohamed S Abdel-Hakeem 1, 2, 3 , Sasikanth Manne 1, 2 , Jean-Christophe Beltra 1, 2, 4 , Erietta Stelekati 1, 2, 5 , Zeyu Chen 1, 2 , Kito Nzingha 1, 2 , Mohammed-Alkhatim Ali 1, 2 , John L Johnson 2, 6 , Josephine R Giles 1, 2, 4 , Divij Mathew 1, 2 , Allison R Greenplate 1, 2 , Golnaz Vahedi 2, 7, 8 , E John Wherry 1, 2, 4
Affiliation  

Exhausted CD8 T cells (TEX) are a distinct state of T cell differentiation associated with failure to clear chronic viruses and cancer. Immunotherapies such as PD-1 blockade can reinvigorate TEX cells, but reinvigoration is not durable. A major unanswered question is whether TEX cells differentiate into functional durable memory T cells (TMEM) upon antigen clearance. Here, using a mouse model, we found that upon eliminating chronic antigenic stimulation, TEX cells partially (re)acquire phenotypic and transcriptional features of TMEM cells. These ‘recovering’ TEX cells originated from the T cell factor (TCF-1+) TEX progenitor subset. Nevertheless, the recall capacity of these recovering TEX cells remained compromised as compared to TMEM cells. Chromatin-accessibility profiling revealed a failure to recover core memory epigenetic circuits and maintenance of a largely exhausted open chromatin landscape. Thus, despite some phenotypic and transcriptional recovery upon antigen clearance, exhaustion leaves durable epigenetic scars constraining future immune responses. These results support epigenetic remodeling interventions for TEX cell–targeted immunotherapies.



中文翻译:

耗尽的T细胞的表观遗传疤痕在消除慢性抗原刺激后阻碍记忆分化

耗尽的 CD8 T 细胞 (T EX ) 是 T 细胞分化的一种独特状态,与未能清除慢性病毒和癌症有关。PD-1 阻断等免疫疗法可以重振 T EX细胞,但重振效果并不持久。一个未解决的主要问题是 T EX细胞是否会在抗原清除后分化为功能性持久记忆 T 细胞 (T MEM )。在这里,我们使用小鼠模型发现,在消除慢性抗原刺激后,T EX细胞部分(重新)获得了 T MEM细胞的表型和转录特征。这些“恢复”的 T EX细胞源自 T 细胞因子 (TCF-1 + ) T EX祖子集。然而,与 T MEM细胞相比,这些恢复中的 T EX细胞的召回能力仍然受到损害。染色质可及性分析显示未能恢复核心记忆表观遗传电路和维持很大程度上耗尽的开放染色质景观。因此,尽管抗原清除后有一些表型和转录恢复,但衰竭会留下持久的表观遗传疤痕,限制未来的免疫反应。这些结果支持 T EX细胞靶向免疫疗法的表观遗传重塑干预。

更新日期:2021-07-26
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