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Chromosome-Scale Genome Assembly of the Resurrection Plant Acanthochlamys bracteata (Velloziaceae)
Genome Biology and Evolution ( IF 3.3 ) Pub Date : 2021-06-23 , DOI: 10.1093/gbe/evab147
Zhi-Yuan Gao 1, 2 , Zhang-Hai Li 3 , Dong-Liang Lin 1, 2 , Xiao-Hua Jin 1
Affiliation  

Acanthochlamys bracteata (Velloziaceae) is a resurrection plant with cold tolerance. Herein, a chromosome-level reference genome of A. bracteata based on Nanopore, Illumina, and Hi-C data is reported. The high-quality assembled genome was 197.97 Mb, with a scaffold N50 value of 8.64 Mb and a contig N50 value of 6.96 Mb. We annotated 23,509 protein-coding genes. Eight contracted gene families and three expanded gene families were detected. Repeat sequences accounted for approximately 28.63% of the genome. The LEA1 and Dehydrin gene families, which are involved in desiccation resistance, expanded in A. bracteata. We identified genes involved in chilling tolerance, COLD1.

中文翻译:

复活植物 Acanthochlamys bracteata (Velloziaceae) 的染色体规模基因组组装

Acanthochlamys bracteata (Velloziaceae) 是一种具有耐寒性的复活植物。本文报道了基于 Nanopore、Illumina 和 Hi-C 数据的 A. bracteata 染色体水平参考基因组。高质量组装基因组为 197.97 Mb,支架 N50 值为 8.64 Mb,contig N50 值为 6.96 Mb。我们注释了 23,509 个蛋白质编码基因。检测到八个收缩基因家族和三个扩展基因家族。重复序列约占基因组的 28.63%。参与抗干燥性的 LEA1 和 Dehydran 基因家族在 A. bracteata 中扩展。我们确定了涉及耐寒性的基因,COLD1。
更新日期:2021-06-23
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